FFCP PHASE1:Hg19::chr3:99509604..99509650,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:99509604..99509650,+ to FFCP PHASE1:Hg19::chr3:99509604..99509650,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1295 | |EntrezGene=1295 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2215 | |HGNC=2215 | ||
|TSSclassifier=strong | |||
|UniProt=P27658 | |UniProt=P27658 | ||
|association_with_transcript=77bp_to_AB384777,BT009917,CU680628,DQ893873,X57527_5end | |||
|cluster_id=chr3:99509604..99509650,+ | |||
|coexpression_cluster_id=C1517 | |||
|description=CAGE_peak_2_at_COL8A1_5end | |||
|id=chr3:99509604..99509650,+ | |||
|ontology_enrichment_celltype=CL:0000055!9.12e-22!180;CL:0000057!2.94e-17!75;CL:0000222!1.24e-10!119;CL:0000192!4.00e-09!42;CL:0000514!4.00e-09!42;CL:0002620!7.67e-09!23;CL:0002334!2.75e-08!12;CL:0000680!3.12e-08!57;CL:0000056!3.12e-08!57;CL:0000355!3.12e-08!57;CL:0000183!1.18e-07!59;CL:0000359!1.72e-07!32;CL:0000187!7.65e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.89e-13;23!CL:0000136;1.47e-10;13!CL:0002334;1.88e-08;12!CL:0002615;4.22e-08;3!CL:0000057;8.40e-08;73!CL:0002580;9.16e-08;3!CL:0002579;2.75e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.07e-20,76;CL:0000136,2.03e-13,15;CL:0002620,3.83e-13,23;CL:0000048,9.04e-11,427;CL:0000723,2.31e-10,433;CL:0000034,7.75e-10,441;CL:0000134,1.31e-08,354;CL:0002334,2.16e-08,12;CL:0002320,3.76e-08,361;CL:0002615,4.16e-08,3;CL:0002580,8.35e-08,3;CL:0002579,3.96e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;6.66e-11;5!DOID:450;6.66e-11;5!DOID:66;6.66e-11;5!DOID:423;6.66e-11;5!DOID:0080000;6.66e-11;5!DOID:11722;6.66e-11;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.80e-11,5;DOID:450,6.80e-11,5;DOID:66,6.80e-11,5;DOID:423,6.80e-11,5;DOID:0080000,6.80e-11,5;DOID:11722,6.80e-11,5 | |||
|ontology_enrichment_uberon=UBERON:0002049!2.38e-11!79;UBERON:0007798!2.38e-11!79;UBERON:0000475!4.06e-09!365;UBERON:0002100!1.34e-08!216;UBERON:0002385!1.77e-08!63;UBERON:0001015!1.77e-08!63;UBERON:0000383!1.77e-08!63;UBERON:0000914!3.19e-08!83;UBERON:0002329!3.19e-08!83;UBERON:0003077!3.19e-08!83;UBERON:0003059!3.19e-08!83;UBERON:0007282!3.19e-08!83;UBERON:0009618!3.19e-08!83;UBERON:0007285!3.19e-08!83;UBERON:0001981!3.23e-08!60;UBERON:0007500!3.23e-08!60;UBERON:0004537!3.23e-08!60;UBERON:0006965!3.23e-08!60;UBERON:0000490!3.30e-08!138;UBERON:0001134!3.75e-08!61;UBERON:0002036!3.75e-08!61;UBERON:0003082!3.75e-08!61;UBERON:0000055!3.99e-08!69;UBERON:0001009!5.28e-08!113;UBERON:0004535!6.92e-08!110;UBERON:0001637!1.04e-07!42;UBERON:0003509!1.04e-07!42;UBERON:0004572!1.04e-07!42;UBERON:0004290!2.25e-07!70;UBERON:0005256!2.30e-07!143;UBERON:0004872!2.79e-07!84;UBERON:0003914!5.51e-07!118;UBERON:0002199!7.79e-07!45;UBERON:0002416!7.79e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.04e-13;6!UBERON:0002358;1.04e-13;6!UBERON:0003684;1.04e-13;6!UBERON:0001178;1.04e-13;6!UBERON:0004457;8.06e-09;9!UBERON:0000042;8.06e-09;9!UBERON:0002097;2.75e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.49e-13,6;UBERON:0002358,1.49e-13,6;UBERON:0003684,1.49e-13,6;UBERON:0001178,1.49e-13,6;UBERON:0002097,1.16e-09,41;UBERON:0002199,1.71e-09,46;UBERON:0002416,1.71e-09,46;UBERON:0002384,4.82e-09,371 | |||
|phase1_expression=10.3556676184217,21.8382534368803,6.90676580070259,13.009528785907,7.15137751083661,11.3404008133048,10.1319951267324,0,0,0.245733936501509,0,0,0,0.247532705920093,0,0.672325146451775,0,0.730310090387373,0.487932798790507,0.123121058076788,0.204000691244253,0.313454721478088,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,1.50401373190767,0.724232594804119,0.795285947051099,3.40644409211845,0.945348171640679,1.99556457716308,1.75669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0,0,0.825354125820202,0.417989933073621,0.258416759169329,0,0,0.402829317109147,0,0.488124115096339,0,2.43042584364528,0.625098097988558,0.44905874525234,0.450445921933289,0,0,0.183201743930407,0,0,0,5.96366342034382,0.25326102332916,0.132409180813219,1.14734648299525,1.06400514659507,1.68203280042692,0,1.2333377420858,0,0.67355336034844,0.163461903113459,0.454072282934794,0,0,0.312160076830321,0,0,0,0,0,0.204154171254893,0.122834317311768,0.516628905878827,2.37600571456411,6.42894016124248,0,0,0.336672227908132,0.375355559615893,0,0.438977620880838,4.59731693698529,3.45547535485173,0.340296549480063,6.27863724911017,4.69826255400848,3.17897851739343,2.10063767259082,1.54578793857658,11.3361837620077,6.88632368426882,0.843881661206331,1.07180705677318,3.5340728394176,3.77404584433427,0.323292113637624,23.4306331060965,5.44061330429257,0.339121184620975,0,0,0,0,0,0,0,0,0,1.56449532329816,0.643240938192885,0,5.10804720835177,0.721879481669586,0,0,0.241011029883482,0,0,0,0,0,0,0,1.40241773803446,0,1.47008711385542,0,0,0,0,0,0.343135620597051,0,0,0,0.0925884451585296,0,0,1.44331342025273,0,0.352226082707465,0.866198686566443,1.38895653772983,1.14152491340759,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0.87192013766656,0,0.646358578788889,0,0,0.531876233169741,0,0.257207374262142,1.41849132023278,0,0.428933980974443,0,1.64648067356154,0,0.355391948742546,1.58390374586686,2.1100756394171,0.871533458600294,2.99918973546171,0,0,0,1.67737398844108,4.59447743336456,0,3.32997005335432,3.28762116080613,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0.415941723061614,1.60586089917446,0.315404830067869,0.468565659970853,3.31040709700491,27.2889004867182,0,0,0.368738337083406,0.434418072340414,0,0.686286847621712,0,0,0,0,0,0,3.72161711728165,5.06424511850606,11.507063871756,1.02511319404561,7.67560873600055,4.82561763430822,5.93672265779964,0.154209693802656,0.532685175939381,0.328508624055237,0.519254429183621,0.116210378459959,0,0.200506470303285,0,0.459257792658427,0.182091168006717,0.917870904715969,0,0.15403067420883,0.784349769176855,0,0,0,0.340187410553031,0.647747748306418,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0,0.328014645699706,0.650756789328606,0.103041011647722,0,0,0,0,1.6068392984416,0,0,0,0,0.107420244868274,0.145016693914229,0,0.267096106940212,0.991709492165869,0,0.382838137483752,0,0,0.62962469366128,0,0.924100740528266,0.532306030317022,0,0.37064843820784,3.14874750832381,0.744316738719335,1.2655176988749,3.62197368455267,0.255897791311334,0,0,0,0.359744915166629,0.54907405947211,0.471249609382746,0.404364963146632,1.58510321173008,0,0,0.487426979262569,1.05650146756755,0.136499911407986,0.848432591722276,0,0.551365343546124,1.32687795048244,3.94605796728386,0,0.655894752046633,1.01455188481352,0,0.845086807596724,0.286822704408103,0.687743287091848,1.78335525740625,0.354761064070598,0.211107635297664,0.658589785919804,0,0.349934720244983,0.288666338176536,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0.111308705022906,0,0,3.18796781201712,0,0,0,0,9.64222721751603,0.629078458031288,0,0,0.0986434056369336,0,1.11136990144637,0,0.0927680981618513,0,0,0,0.724999575434793,0.227586896570999,0.254253650292766,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0.31900115973192,3.57230614267263,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.530745387020035,0,0,0,0,0,0.802577647298789,0,0,0,0,1.57833761139756,0,0.30607276163049,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.193978032976839,0,0.225980740780532,0.137041924646751,0.397429223405979,0,0,0.0801588202515337,0,0.799238438328521,0,0,0,0,0,0,0.815425236441684,0.418411385249333,0.203996435272644,0,0,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0.223171457441873,0,4.32359860250884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,3.40645944732405,0,0,0.662091970365432,0,0,1.72844298240254,0.653174720218818,0,0,1.19271615249795,0.113312091520126,0,0,0,0,0,0,0.640724475406168,0,0.8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| ||
|short_description=p2@COL8A1 | |||
}} | }} |
Latest revision as of 00:00, 20 September 2015
Short description: | p2@COL8A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COL8A1_5end |
Coexpression cluster: | C1517_Fibroblast_Preadipocyte_Adipocyte_basal_bone_Osteoblast_pleomorphic |
Association with transcript: | 77bp_to_AB384777, BT009917, CU680628, DQ893873, X57527_5end |
EntrezGene: | COL8A1 |
HGNC: | 2215 |
UniProt: | P27658 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.07e-20 | 76 |
fat cell | 2.03e-13 | 15 |
skin fibroblast | 3.83e-13 | 23 |
multi fate stem cell | 9.04e-11 | 427 |
somatic stem cell | 2.31e-10 | 433 |
stem cell | 7.75e-10 | 441 |
mesenchymal cell | 1.31e-08 | 354 |
preadipocyte | 2.16e-08 | 12 |
connective tissue cell | 3.76e-08 | 361 |
adipocyte of omentum tissue | 4.16e-08 | 3 |
preadipocyte of the breast | 8.35e-08 | 3 |
omentum preadipocyte | 3.96e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.49e-13 | 6 |
peritoneum | 1.49e-13 | 6 |
abdominal cavity | 1.49e-13 | 6 |
visceral peritoneum | 1.49e-13 | 6 |
skin of body | 1.16e-09 | 41 |
integument | 1.71e-09 | 46 |
integumental system | 1.71e-09 | 46 |
connective tissue | 4.82e-09 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.80e-11 | 5 |
myotonic disease | 6.80e-11 | 5 |
muscle tissue disease | 6.80e-11 | 5 |
myopathy | 6.80e-11 | 5 |
muscular disease | 6.80e-11 | 5 |
myotonic dystrophy | 6.80e-11 | 5 |