FFCP PHASE1:Hg19::chr18:56246464..56246503,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:56246464..56246503,-
|short_description=p3@ALPK2
|description=CAGE_peak_3_at_ALPK2_5end
|association_with_transcript=63bp_to_AL832018_5end
|EntrezGene=11...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=115701 | |EntrezGene=115701 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20565 | |HGNC=20565 | ||
|TSSclassifier=strong | |||
|UniProt=Q86TB3 | |UniProt=Q86TB3 | ||
|association_with_transcript=63bp_to_AL832018_5end | |||
|cluster_id=chr18:56246464..56246503,- | |||
|coexpression_cluster_id=C1324 | |||
|description=CAGE_peak_3_at_ALPK2_5end | |||
|id=chr18:56246464..56246503,- | |||
|ontology_enrichment_celltype=CL:0000055!4.80e-25!180;CL:0000057!9.76e-21!75;CL:0000048!4.71e-12!430;CL:0000723!1.32e-11!436;CL:0000548!1.55e-11!679;CL:0000004!1.55e-11!679;CL:0000255!1.55e-11!679;CL:0000012!1.79e-11!682;CL:0000144!1.82e-11!625;CL:0002620!1.86e-11!23;CL:0000034!3.07e-11!444;CL:0002371!8.55e-10!591;CL:0002334!1.49e-08!12;CL:0000219!1.06e-07!390;CL:0000134!1.25e-07!358;CL:0002320!2.13e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.06e-14;23!CL:0000349;2.40e-11;19!CL:0002334;1.10e-10;12!CL:0000134;3.32e-10;55!CL:0000048;3.48e-09;58!CL:0000723;9.26e-08;61!CL:0002320;5.86e-07;188!CL:0000034;6.34e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.08e-18,76;CL:0002620,8.52e-14,23;CL:0000048,2.40e-13,427;CL:0000723,1.12e-12,433;CL:0000219,2.73e-12,386;CL:0000134,3.52e-12,354;CL:0000034,8.02e-12,441;CL:0002320,2.25e-11,361;CL:0000349,3.36e-11,19;CL:0002334,1.04e-10,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.03e-07;5!DOID:450;1.03e-07;5!DOID:66;1.03e-07;5!DOID:423;1.03e-07;5!DOID:0080000;1.03e-07;5!DOID:11722;1.03e-07;5!DOID:2394;3.46e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.64e-08,5;DOID:450,9.64e-08,5;DOID:66,9.64e-08,5;DOID:423,9.64e-08,5;DOID:0080000,9.64e-08,5;DOID:11722,9.64e-08,5;DOID:2394,3.28e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.22e-10!83;UBERON:0002329!9.22e-10!83;UBERON:0003077!9.22e-10!83;UBERON:0003059!9.22e-10!83;UBERON:0007282!9.22e-10!83;UBERON:0009618!9.22e-10!83;UBERON:0007285!9.22e-10!83;UBERON:0002199!1.06e-09!45;UBERON:0002416!1.06e-09!45;UBERON:0002384!1.03e-08!375;UBERON:0002097!1.40e-08!40;UBERON:0005631!7.60e-08!14;UBERON:0000158!7.60e-08!14;UBERON:0004290!2.54e-07!70;UBERON:0005256!8.00e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.71e-09;10!UBERON:0000158;5.71e-09;10!UBERON:0000478;4.89e-08;24!UBERON:0002384;7.43e-08;198!UBERON:0002097;2.59e-07;41!UBERON:0002199;5.02e-07;46!UBERON:0002416;5.02e-07;46!UBERON:0003688;8.81e-07;6!UBERON:0002358;8.81e-07;6!UBERON:0003684;8.81e-07;6!UBERON:0001178;8.81e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,7.47e-13,371;UBERON:0002199,2.26e-10,46;UBERON:0002416,2.26e-10,46;UBERON:0005631,2.44e-10,14;UBERON:0000158,2.44e-10,14;UBERON:0002097,2.77e-09,41;UBERON:0000478,6.23e-08,24;UBERON:0004871,7.52e-07,8;UBERON:0003688,8.97e-07,6;UBERON:0002358,8.97e-07,6;UBERON:0003684,8.97e-07,6;UBERON:0001178,8.97e-07,6 | |||
|phase1_expression=3.63356758541113,1.49870366723688,2.81908808191942,1.0007329835313,1.78784437770915,0.872338524100369,2.53299878168311,0.631719873426831,0,0.245733936501509,0,6.77168253603534,2.37390280405608,0.247532705920093,0.331397375727916,1.34465029290355,0,0.730310090387373,1.46379839637152,1.23121058076788,0.408001382488506,0,1.14494394852423,2.32686522623903,2.38531015230125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0.822335776043652,1.23882548358041,0.28769239232215,1.0246428261164,0.47296445977717,0,0,0,0.376484679085209,2.18324920046277,1.79778787556068,2.44867113896722,4.17207735198922,0,0,0.199463657621632,0.426224750532694,1.16083695451434,1.70215567407342,1.24564449799115,2.51248665256743,2.60741459210101,2.38907729175628,0.605399502633369,1.47311054395026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02290049474824,1.0843174571537,5.51471701699479,2.17269778441236,0.795285947051099,0,0,0.665188192387692,0.527008714158756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.44852317882041,1.77282716330412,14.3001915278276,2.86836620748814,1.06400514659507,0.560677600142307,1.06748995729705,0.98667019366864,0.311211035399766,0.404132016209064,0.163461903113459,0.908144565869588,0,0.234321431833797,0,0,0,1.76151747965647,0.809364721840658,0.842704840213491,1.02077085627447,0.61417158655884,0.826606249406124,0,2.47266929278557,0,0,0,0.125118519871964,3.60183350129438,5.26773145057006,15.63087758575,1.65261864797256,0.453728732640084,25.6527179035073,13.6676728843883,6.78182083710598,7.80236849819446,5.66788910811414,15.4584324027377,7.258557396932,11.6455669246474,5.55390929418832,16.1557615516233,10.2175387492952,2.10139873864455,16.3304412557643,7.2541510723901,4.40857540007268,0,0.545492241181669,0,0,0,0,0.207322110030741,0.252320850875628,0,4.69348596989448,5.78916844373597,4.14404764057442,0.464367928031979,0,0.946454400318751,0.505754070234305,0.723033089650446,0.882351781859152,0.871517776369625,0.474541238222193,1.21348177344148,0.784885860501384,0.38474715694639,0,0,0.4115740113314,0,0,0.982827216677626,0,0,0,0.343135620597051,0.109750285408626,0,0,0.0925884451585296,0,0,0,1.97081688457631,2.11335649624479,0.144366447761074,0,0,0,0,0,0,0,0.93733833986777,2.85569617938061,0.567100388969546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34557301214433,0.43596006883328,3.2268845761218,4.13669490424889,0,0.845302752556,5.31876233169741,1.04007436911366,0,0,0,0.428933980974443,0,0,0.65147236858747,1.06617584622764,0,4.82303003295338,1.74306691720059,3.499054691372,0,0,0,5.5113716763064,2.29723871668228,1.42636905040718,1.15825045334063,2.05476322550383,3.22309733831812,0,0,0,0,0.254094624222463,0,0,0.502548796003046,0,0,0,0,0.24538298343828,0,0,3.74347550755453,6.78030157429215,2.68094105557689,3.5142424497814,0.300946099727719,0,0,2.65690239414175,1.29058417979192,1.73767228936166,0,0,0,0,0,1.21251028578504,3.32870879020994,5.74541557326393,6.20269519546942,15.9600452219585,3.36792113319688,4.61300937320523,7.16390148693385,6.11244900345709,1.48418066444991,3.23840356985577,2.84098760501003,3.20295908453856,0.519254429183621,1.51073491997947,0,0,0,2.75554675595056,2.00300284807389,1.57349297951309,0,0.308061348417659,0,1.46139224653261,3.79985864014353,0,0,1.72732732881711,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,3.21367859688319,0.773365746336976,0,0.307007349452259,0.551346289938122,0.859361958946189,0.435050081742686,0.340906509664404,2.67096106940212,0,0,0,0,4.64845549297286,15.740617341532,0.6970372701606,0,0,0,0.37064843820784,1.00187420719394,1.86079184679834,2.84741482246853,5.52827562379092,0,0.855877976067841,0.318203247925937,0.78494864019923,0.719489830333259,1.09814811894422,0.471249609382746,0.202182481573316,0,0,0,0.487426979262569,0,4.36799716505554,2.12108147930569,0,0,0.66343897524122,0.438450885253763,0,0,2.02910376962704,0.6196469961995,0.563391205064483,0.143411352204052,1.8667317792493,1.07001315444375,0.709522128141196,1.05553817648832,0.329294892959902,0,0.699869440489966,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,5.68272293612826,7.63982351160608,0,3.99308912729002,0,0,0.111308705022906,0.329607748453519,0,0,0,0,3.47713520507326,0,14.9299002077668,0.718946809178615,0,0,0.0986434056369336,0,4.44547960578548,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0.21787692703798,0,0.0769502585037971,0.341826167541004,0,0,0,6.38002319463839,2.65633020865401,4.79731298416771,0,0,0,0,0,0,0,0,1.89898258075224,0,0,0,0,0,0,0.889563386041866,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,4.81034942126376,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.451961481561065,0.822251547880505,0.397429223405979,0,0,2.32460578729448,0,0.39961921916426,0,0,0,0,0,0,4.89255141865011,5.75315654717833,0.917983958726896,0.866851769704557,0,0,0,1.28929632425987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| ||
|short_description=p3@ALPK2 | |||
}} | }} |
Latest revision as of 00:04, 20 September 2015
Short description: | p3@ALPK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ALPK2_5end |
Coexpression cluster: | C1324_Fibroblast_Preadipocyte_basal_migratory_mesenchymal_Smooth_spindle |
Association with transcript: | 63bp_to_AL832018_5end |
EntrezGene: | ALPK2 |
HGNC: | 20565 |
UniProt: | Q86TB3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.08e-18 | 76 |
skin fibroblast | 8.52e-14 | 23 |
multi fate stem cell | 2.40e-13 | 427 |
somatic stem cell | 1.12e-12 | 433 |
motile cell | 2.73e-12 | 386 |
mesenchymal cell | 3.52e-12 | 354 |
stem cell | 8.02e-12 | 441 |
connective tissue cell | 2.25e-11 | 361 |
extraembryonic cell | 3.36e-11 | 19 |
preadipocyte | 1.04e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 7.47e-13 | 371 |
integument | 2.26e-10 | 46 |
integumental system | 2.26e-10 | 46 |
extraembryonic membrane | 2.44e-10 | 14 |
membranous layer | 2.44e-10 | 14 |
skin of body | 2.77e-09 | 41 |
extraembryonic structure | 6.23e-08 | 24 |
somatic layer of lateral plate mesoderm | 7.52e-07 | 8 |
omentum | 8.97e-07 | 6 |
peritoneum | 8.97e-07 | 6 |
abdominal cavity | 8.97e-07 | 6 |
visceral peritoneum | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.64e-08 | 5 |
myotonic disease | 9.64e-08 | 5 |
muscle tissue disease | 9.64e-08 | 5 |
myopathy | 9.64e-08 | 5 |
muscular disease | 9.64e-08 | 5 |
myotonic dystrophy | 9.64e-08 | 5 |
ovarian cancer | 3.28e-07 | 14 |