FFCP PHASE1:Hg19::chr5:125695985..125695996,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65983 | |EntrezGene=65983 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24911 | |HGNC=24911 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z6D8 | |UniProt=B7Z6D8 | ||
|association_with_transcript=161bp_to_ENST00000513040_5end | |association_with_transcript=161bp_to_ENST00000513040_5end | ||
|cluster_id=chr5:125695985..125695996,+ | |||
|coexpression_cluster_id=C80 | |||
|description=CAGE_peak_19_at_GRAMD3_5end | |description=CAGE_peak_19_at_GRAMD3_5end | ||
|id=chr5:125695985..125695996,+ | |id=chr5:125695985..125695996,+ | ||
|ontology_enrichment_celltype=CL:0000453!2.77e-20!5;CL:0002541!6.13e-13!3;CL:0002615!2.78e-12!3;CL:0000990!4.09e-11!8;CL:0001014!2.26e-09!2;CL:0001016!2.26e-09!2;CL:0000451!5.03e-09!10 | |ontology_enrichment_celltype=CL:0000453!2.77e-20!5;CL:0002541!6.13e-13!3;CL:0002615!2.78e-12!3;CL:0000990!4.09e-11!8;CL:0001014!2.26e-09!2;CL:0001016!2.26e-09!2;CL:0000451!5.03e-09!10 | ||
|ontology_enrichment_celltype_v019=CL:0000453;6.00e-58;5!CL:0001014;4.32e-37;2!CL:0001016;4.32e-37;2!CL:0000990;1.82e-32;8!CL:0000451;1.17e-26;10!CL:0002541;4.87e-25;3!CL:0000840;4.39e-13;5!CL:0002615;3.35e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,4.82e-58,5;CL:0001014,3.94e-37,2;CL:0001016,3.94e-37,2;CL:0000990,1.61e-32,8;CL:0000451,1.06e-26,10;CL:0002541,4.87e-25,3;CL:0000840,4.26e-13,5;CL:0001029,4.26e-13,5;CL:0002615,3.35e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;1.18e-19;1!DOID:4549;1.18e-19;1!DOID:5861;1.18e-19;1!DOID:6496;1.18e-19;1!DOID:4074;2.85e-10;2!DOID:4905;2.85e-10;2!DOID:3498;2.85e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.30e-19,1;DOID:4549,1.30e-19,1;DOID:5861,1.30e-19,1;DOID:6496,1.30e-19,1;DOID:4074,3.27e-10,2;DOID:4905,3.27e-10,2;DOID:3498,3.27e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0003688!1.29e-15!6;UBERON:0002358!1.29e-15!6;UBERON:0003684!1.29e-15!6;UBERON:0001178!1.29e-15!6;UBERON:0004457!2.85e-14!12;UBERON:0000042!2.85e-14!12;UBERON:0000476!6.13e-13!3;UBERON:0000920!6.13e-13!3;UBERON:0003124!1.79e-09!7;UBERON:0004923!2.52e-08!57;UBERON:0002323!1.52e-07!46;UBERON:0004458!5.90e-07!49;UBERON:0005631!7.22e-07!14;UBERON:0000158!7.22e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;4.87e-25;3!UBERON:0000920;4.87e-25;3!UBERON:0001282;1.88e-19;1!UBERON:0009842;1.88e-19;1!UBERON:0003704;1.88e-19;1!UBERON:0001171;1.88e-19;1!UBERON:0001172;1.88e-19;1!UBERON:0005631;3.37e-08;10!UBERON:0000158;3.37e-08;10!UBERON:0002418;1.99e-07;3!UBERON:0004755;1.99e-07;3!UBERON:0001280;2.32e-07;3!UBERON:0004647;2.32e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,4.87e-25,3;UBERON:0001282,2.25e-19,1;UBERON:0009842,2.25e-19,1;UBERON:0003704,2.25e-19,1;UBERON:0001171,2.25e-19,1;UBERON:0001172,2.25e-19,1;UBERON:0003124,2.55e-11,7;UBERON:0002418,2.05e-07,3;UBERON:0004755,2.05e-07,3;UBERON:0001280,2.47e-07,3;UBERON:0004647,2.47e-07,3;UBERON:0005171,2.47e-07,3 | |||
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|phase1_expression=0.181678379270557,0,0.281908808191942,1.0007329835313,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0.788512075169673,0.702848489956279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61384789315225,0,0.128139149255701,0,0.321707842287215,0,0,0.355123450626254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07643550786903,0,0.359030577639089,0.977826347298073,2.23300811812344,0.641183153813036,4.26427820814908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,2.18502341580683,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,4.23629408119201,0,0,0,0,0,0.160317640503067,0.213452994739353,0,0,0,0,0.14405479798815,0,0,0,0,0,0.866851769704557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.8214231425556,2.32140586367385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89659637035217,0,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0.194860308839388,3.32162100783408,3.27130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709618961301111,0,0,0,0,0.472775363535873,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0.169927114687817,0.187967835959707,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0,0.747091421144008,0,0,0,0,0,0,0,0 | ||
|short_description=p19@GRAMD3 | |short_description=p19@GRAMD3 | ||
}} | }} |
Latest revision as of 01:03, 20 September 2015
Short description: | p19@GRAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_GRAMD3_5end |
Coexpression cluster: | C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast |
Association with transcript: | 161bp_to_ENST00000513040_5end |
EntrezGene: | GRAMD3 |
HGNC: | 24911 |
UniProt: | B7Z6D8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 4.82e-58 | 5 |
CD1a-positive Langerhans cell | 3.94e-37 | 2 |
immature CD1a-positive Langerhans cell | 3.94e-37 | 2 |
conventional dendritic cell | 1.61e-32 | 8 |
dendritic cell | 1.06e-26 | 10 |
chorionic membrane mesenchymal stem cell | 4.87e-25 | 3 |
immature conventional dendritic cell | 4.26e-13 | 5 |
common dendritic progenitor | 4.26e-13 | 5 |
adipocyte of omentum tissue | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 4.87e-25 | 3 |
intralobular bile duct | 2.25e-19 | 1 |
acinus | 2.25e-19 | 1 |
intrahepatic bile duct | 2.25e-19 | 1 |
portal lobule | 2.25e-19 | 1 |
hepatic acinus | 2.25e-19 | 1 |
chorion | 2.55e-11 | 7 |
cartilage tissue | 2.05e-07 | 3 |
skeletal tissue | 2.05e-07 | 3 |
liver parenchyma | 2.47e-07 | 3 |
liver lobule | 2.47e-07 | 3 |
hepatic duct | 2.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.30e-19 | 1 |
extraosseous chondrosarcoma | 1.30e-19 | 1 |
myxoid chondrosarcoma | 1.30e-19 | 1 |
extraskeletal myxoid chondrosarcoma | 1.30e-19 | 1 |
pancreas adenocarcinoma | 3.27e-10 | 2 |
pancreatic carcinoma | 3.27e-10 | 2 |
pancreatic ductal adenocarcinoma | 3.27e-10 | 2 |