FFCP PHASE1:Hg19::chr7:94053635..94053729,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:94053635..94053729,+
|short_description=p4@COL1A2
|description=CAGE_peak_4_at_COL1A2_5end
|association_with_transcript=335bp_to_ENST00000469732_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1278 | |EntrezGene=1278 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2198 | |HGNC=2198 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=335bp_to_ENST00000469732_5end | |||
|cluster_id=chr7:94053635..94053729,+ | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_4_at_COL1A2_5end | |||
|id=chr7:94053635..94053729,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.79e-49!180;CL:0000057!1.40e-27!75;CL:0000680!3.40e-21!57;CL:0000056!3.40e-21!57;CL:0000355!3.40e-21!57;CL:0000187!1.98e-20!54;CL:0000183!2.48e-19!59;CL:0000393!7.94e-18!60;CL:0000211!7.94e-18!60;CL:0000192!3.69e-16!42;CL:0000514!3.69e-16!42;CL:0000048!5.25e-13!430;CL:0000359!4.36e-12!32;CL:0000723!5.35e-12!436;CL:0000034!1.10e-11!444;CL:0002620!4.00e-11!23;CL:0002334!9.64e-08!12;CL:0002494!3.49e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.64e-11;55!CL:0000187;1.73e-11;55!CL:0000192;1.70e-10;43!CL:0000723;2.63e-10;61!CL:0000359;6.65e-10;32!CL:0000048;7.48e-10;58!CL:0000057;7.93e-10;73!CL:0002334;5.16e-09;12!CL:0002320;6.86e-09;188!CL:0000499;8.74e-09;28!CL:0000393;1.67e-08;61!CL:0000211;1.67e-08;61!CL:0002620;2.07e-08;23!CL:0002494;2.74e-08;16!CL:0000327;2.93e-08;15!CL:0000034;4.26e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.14e-25,76;CL:0000680,1.19e-20,58;CL:0000056,1.19e-20,58;CL:0000355,1.19e-20,58;CL:0000048,1.43e-20,427;CL:0000187,1.05e-19,55;CL:0000723,1.61e-19,433;CL:0000034,3.58e-18,441;CL:0000393,6.13e-17,61;CL:0000211,6.13e-17,61;CL:0000192,1.18e-14,43;CL:0000514,1.18e-14,43;CL:0000359,2.08e-10,32;CL:0002320,1.98e-09,361;CL:0002334,4.84e-09,12;CL:0000499,8.69e-09,28;CL:0002620,2.24e-08,23;CL:0002494,2.28e-08,16;CL:0000327,2.74e-08,15;CL:0000134,5.69e-08,354 | |||
|ontology_enrichment_development_v019=CL:0000355;4.38e-11;58!CL:0000514;1.70e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.79e-24!83;UBERON:0002329!1.79e-24!83;UBERON:0003077!1.79e-24!83;UBERON:0003059!1.79e-24!83;UBERON:0007282!1.79e-24!83;UBERON:0009618!1.79e-24!83;UBERON:0007285!1.79e-24!83;UBERON:0004290!3.52e-23!70;UBERON:0002385!2.82e-21!63;UBERON:0001015!2.82e-21!63;UBERON:0000383!2.82e-21!63;UBERON:0001134!3.57e-21!61;UBERON:0002036!3.57e-21!61;UBERON:0003082!3.57e-21!61;UBERON:0000486!3.25e-18!82;UBERON:0005256!2.64e-13!143;UBERON:0004872!2.98e-10!84;UBERON:0002100!5.95e-10!216;UBERON:0002199!2.17e-09!45;UBERON:0002416!2.17e-09!45;UBERON:0003102!3.70e-09!95;UBERON:0000475!4.70e-09!365;UBERON:0001637!3.94e-08!42;UBERON:0003509!3.94e-08!42;UBERON:0004572!3.94e-08!42;UBERON:0002097!7.04e-08!40;UBERON:0007100!1.27e-07!27;UBERON:0001013!1.54e-07!14;UBERON:0004573!1.59e-07!33;UBERON:0004571!1.59e-07!33;UBERON:0000948!2.84e-07!24;UBERON:0005498!2.84e-07!24;UBERON:0004140!2.84e-07!24;UBERON:0009881!2.84e-07!24;UBERON:0004141!2.84e-07!24;UBERON:0003084!2.84e-07!24;UBERON:0007005!2.84e-07!24;UBERON:0004139!2.84e-07!24;UBERON:0004291!2.84e-07!24;UBERON:0001009!5.67e-07!113;UBERON:0002049!6.50e-07!79;UBERON:0007798!6.50e-07!79;UBERON:0000490!6.95e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.87e-09;198!UBERON:0001013;4.40e-08;14!UBERON:0002385;1.08e-07;31!UBERON:0001015;1.08e-07;31!UBERON:0000383;1.08e-07;31!UBERON:0004457;2.39e-07;9!UBERON:0000042;2.39e-07;9!UBERON:0003688;4.87e-07;6!UBERON:0002358;4.87e-07;6!UBERON:0003684;4.87e-07;6!UBERON:0001178;4.87e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,4.88e-21,62;UBERON:0002036,4.88e-21,62;UBERON:0003082,4.88e-21,62;UBERON:0007524,5.51e-21,73;UBERON:0002329,9.73e-21,71;UBERON:0003059,9.73e-21,71;UBERON:0007282,9.73e-21,71;UBERON:0004290,9.73e-21,71;UBERON:0009618,9.73e-21,71;UBERON:0003077,3.52e-20,72;UBERON:0007285,3.52e-20,72;UBERON:0002385,8.17e-20,64;UBERON:0001015,8.17e-20,64;UBERON:0000383,8.17e-20,64;UBERON:0007503,3.62e-17,78;UBERON:0000486,4.39e-17,83;UBERON:0005256,2.76e-13,122;UBERON:0003104,3.32e-12,160;UBERON:0009142,3.32e-12,160;UBERON:0002384,8.05e-10,371;UBERON:0004872,1.77e-09,83;UBERON:0000926,4.16e-09,315;UBERON:0004120,4.16e-09,315;UBERON:0006603,4.16e-09,315;UBERON:0002199,1.42e-08,46;UBERON:0002416,1.42e-08,46;UBERON:0001637,4.08e-08,42;UBERON:0003509,4.08e-08,42;UBERON:0004572,4.08e-08,42;UBERON:0001013,4.25e-08,14;UBERON:0000490,4.41e-08,148;UBERON:0000948,1.92e-07,24;UBERON:0005498,1.92e-07,24;UBERON:0004140,1.92e-07,24;UBERON:0009881,1.92e-07,24;UBERON:0004141,1.92e-07,24;UBERON:0003084,1.92e-07,24;UBERON:0007005,1.92e-07,24;UBERON:0004139,1.92e-07,24;UBERON:0004291,1.92e-07,24;UBERON:0002100,3.84e-07,199;UBERON:0003688,4.81e-07,6;UBERON:0002358,4.81e-07,6;UBERON:0003684,4.81e-07,6;UBERON:0001178,4.81e-07,6;UBERON:0004573,5.24e-07,33;UBERON:0004571,5.24e-07,33;UBERON:0002097,6.67e-07,41 | |||
|phase1_expression=10.3556676184217,16.2716398157147,16.3507108751327,19.0139266870948,18.7723659659461,15.7020934338066,10.1319951267324,1.26343974685366,1.04474251279935,0.491467873003018,0,0.873765488520689,3.4289707169699,2.10402800032079,1.98838425436749,4.03395087871065,3.61616716814386,5.11217063271161,3.41552959153355,2.09305798730539,3.26401105990805,3.13454721478088,0.572471974262113,0.684372125364421,1.12988375635323,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,2.68280343881454,3.06870148424473,15.5418835525363,15.5414752297126,13.7604193012783,13.5198610998687,32.117901439974,0.756278537312543,1.10864698731282,0.87834785693126,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.8425414881566,5.82500353657067,6.3556406790345,24.0942761429004,6.38403087957043,3.36406560085384,7.47242970107935,4.68668341992604,1.8672662123986,2.82892411346345,3.75962377160955,9.23280308634082,2.30470369792,1.40592859100278,0.936480230490962,0.570471821544449,2.09228152772521,0.469737994575059,1.61872944368132,0.561803226808994,1.22492502752936,0.61417158655884,2.27316718586684,13.0680314301026,23.7376252107415,4.55080680969013,0.718618141816238,0.841680569770331,2.00189631795143,0.831192346452549,4.82875382968922,12.2595118319608,8.11285518095623,2.38207584636044,10.0458195985763,15.1625746061183,12.5039821684141,13.5040993237981,5.46178404963726,15.2007918626921,11.7253619488902,19.9156072044694,7.60008640257349,15.1460264546469,10.3095886479375,13.5782687727802,25.5606906611962,6.34738218834134,3.56077243852024,0,0,0,0.243947412259191,0,0.116193942869518,0.207322110030741,0.252320850875628,0,6.25798129319264,9.64861407289328,1.38134921352481,6.03678306441573,2.88751792667834,0,0,0,0,0,0,0,0,0,0,1.40241773803446,7.8199062152966,17.641045366265,0,0,0,0,0,0.514703430895577,0,0,0,0,0.651616610620649,3.11980435583874,0,0,1.52631302506568,0.288732895522148,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411309970813294,0.300343057843917,0,1.79409734952577,1.30788020649984,1.24675085895615,5.55868377758444,3.57656445851882,8.45302752556,3.98907174877306,6.24044621468197,1.02882949704857,1.41849132023278,2.66422179016099,6.0050757336422,8.68194568626309,3.29296134712308,1.62868092146868,2.48774364119782,0,1.20575750823834,0,0.199945982364114,0,0,0,6.23024624278115,11.4861935834114,2.85273810081437,3.04040744001916,2.4657158706046,1.07436577943937,0,0,0,0,0,0,0.773288812777695,0,1.27587750330633,0,0,0,1.2269149171914,3.00102312635806,1.35632511849868,35.3550464602372,31.7603600058948,23.6553622550902,8.19989904948992,8.72743689210385,4.5481500811197,3.10419213877515,4.64957918974806,4.97796755062599,3.0409265063829,5.09083009403126,13.0394501048125,0,0,0,0.303127571446259,6.65741758041988,4.83824469327489,20.3448402411397,15.9600452219585,37.6084526540319,19.4771506868665,10.7458522304008,23.6455264081103,8.90508398669946,2.7757744884478,5.14929003408069,1.39616165223476,1.03850885836724,2.67283870457906,0,0,0,4.70739237474888,6.19109971222838,5.76947425821466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.206082023295445,0.0915694648183434,0.165018999841176,0,0.650060246036521,9.64103579064957,1.93341436584244,2.15668063960502,2.91656981979646,1.51620229732984,3.97454906012612,5.36561767482646,1.87498580315422,8.99223560032047,0,0,0.127612712494584,0,0.929691098594572,24.8701753996206,0.6970372701606,2.7723022215848,2.66153015158511,0.869932992075073,4.633105477598,2.57624796135584,0.744316738719335,2.84741482246853,5.90953601163857,2.55897791311334,1.71175595213568,0.95460974377781,7.8494864019923,2.87795932133304,5.21620356498504,4.3590588867904,2.22400729730648,3.17020642346017,2.52755073743389,3.41343617362713,4.14312932373184,3.16950440270266,3.8219975194236,10.4640019645747,6.78048699721457,6.06501877900737,4.64407282668854,3.5076070820301,10.4179596168004,6.55894752046633,4.8698490471049,2.478587984798,3.09865162785466,2.15117028306077,1.57198465620994,4.280052617775,0.709522128141196,9.71095122369255,12.8425008254362,1.13841952129715,1.39973888097993,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,2.14870036263921,1.18785872333055,0.614321404198464,0,0,0,0,0,2.59022384726391,0,0,0,0,15.2409397954286,0,0,0,0.887790650732402,0,2.22273980289274,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,1.53900517007594,0,0,0,0,1.5950057986596,1.83195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,2.4441205797345,0,0,0,0,33.7082611865491,0,0,0,0.242780379534093,0.394584402849391,10.8891644443797,0,1.32691817219825,0,0,0,0,0,0,0,0,0,0,0,2.44617335538842,1.20390222730132,0,0,0,0,0,8.13530666809917,0,0,0,0,0,0.85381197895741,0,0,0,0.171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| ||
|short_description=p4@COL1A2 | |||
}} | }} |
Latest revision as of 02:50, 20 September 2015
Short description: | p4@COL1A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_COL1A2_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 335bp_to_ENST00000469732_5end |
EntrezGene: | COL1A2 |
HGNC: | 2198 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.14e-25 | 76 |
muscle precursor cell | 1.19e-20 | 58 |
myoblast | 1.19e-20 | 58 |
multi-potent skeletal muscle stem cell | 1.19e-20 | 58 |
multi fate stem cell | 1.43e-20 | 427 |
muscle cell | 1.05e-19 | 55 |
somatic stem cell | 1.61e-19 | 433 |
stem cell | 3.58e-18 | 441 |
electrically responsive cell | 6.13e-17 | 61 |
electrically active cell | 6.13e-17 | 61 |
smooth muscle cell | 1.18e-14 | 43 |
smooth muscle myoblast | 1.18e-14 | 43 |
vascular associated smooth muscle cell | 2.08e-10 | 32 |
connective tissue cell | 1.98e-09 | 361 |
preadipocyte | 4.84e-09 | 12 |
stromal cell | 8.69e-09 | 28 |
skin fibroblast | 2.24e-08 | 23 |
cardiocyte | 2.28e-08 | 16 |
extracellular matrix secreting cell | 2.74e-08 | 15 |
mesenchymal cell | 5.69e-08 | 354 |