FFCP PHASE2:Hg19::chrX:153602991..153603011,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:2316 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:3754 |TSSclass...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=2316 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=3754 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P21333,E9KL45,Q60FE5,Q6NXF2,Q8TES4 | ||
|association_with_transcript=0bp_to_ENST00000369850,ENST00000422373,NM_001110556,NM_001456,uc004fkk.2,uc010nuu.1_5end | |association_with_transcript=0bp_to_ENST00000369850,ENST00000422373,NM_001110556,NM_001456,uc004fkk.2,uc010nuu.1_5end | ||
|cluster_id=chrX:153602991..153603011,- | |cluster_id=chrX:153602991..153603011,- |
Latest revision as of 02:51, 20 September 2015
Short description: | p3@FLNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FLNA_5end |
Coexpression cluster: | C48_smooth_bladder_esophagus_colon_penis_aorta_uterus |
Association with transcript: | 0bp_to_ENST00000369850, ENST00000422373, NM_001110556, NM_001456, uc004fkk.2, uc010nuu.1_5end |
EntrezGene: | FLNA |
HGNC: | 3754 |
UniProt: | P21333E9KL45Q60FE5Q6NXF2Q8TES4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p3@FLNA |
---|
0
500
1000
1500
2000
2500
3000
3500
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 2.66e-10 | 43 |
smooth muscle myoblast | 2.66e-10 | 43 |
vascular associated smooth muscle cell | 9.08e-09 | 32 |
muscle cell | 1.91e-08 | 55 |
muscle precursor cell | 2.98e-08 | 58 |
myoblast | 2.98e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.98e-08 | 58 |
mesodermal cell | 9.12e-08 | 121 |
electrically responsive cell | 1.84e-07 | 61 |
electrically active cell | 1.84e-07 | 61 |
Showing 1 to 10 of 11 entries
Ontology term | p-value | n |
---|---|---|
epithelial tube | 1.32e-13 | 117 |
splanchnic layer of lateral plate mesoderm | 2.68e-13 | 83 |
circulatory system | 2.99e-13 | 112 |
cardiovascular system | 8.73e-13 | 109 |
mesenchyme | 4.50e-12 | 160 |
entire embryonic mesenchyme | 4.50e-12 | 160 |
epithelial tube open at both ends | 2.28e-11 | 59 |
blood vessel | 2.28e-11 | 59 |
blood vasculature | 2.28e-11 | 59 |
vascular cord | 2.28e-11 | 59 |
Showing 1 to 10 of 37 entries