FFCP PHASE1:Hg19::chr7:94055058..94055131,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:94055058..94055131,+ to FFCP PHASE1:Hg19::chr7:94055058..94055131,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1278 | |EntrezGene=1278 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2198 | |HGNC=2198 | ||
|TSSclassifier=strong | |||
|UniProt=P08123 | |UniProt=P08123 | ||
|association_with_transcript=0bp_to_J00114,X55525_5end | |||
|cluster_id=chr7:94055058..94055131,+ | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_5_at_COL1A2_5end | |||
|id=chr7:94055058..94055131,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.52e-45!180;CL:0000057!4.03e-25!75;CL:0000680!1.61e-21!57;CL:0000056!1.61e-21!57;CL:0000355!1.61e-21!57;CL:0000187!8.90e-21!54;CL:0000183!1.77e-20!59;CL:0000393!2.92e-17!60;CL:0000211!2.92e-17!60;CL:0000192!6.27e-17!42;CL:0000514!6.27e-17!42;CL:0000048!1.57e-13!430;CL:0000359!7.31e-13!32;CL:0000723!1.63e-12!436;CL:0000034!5.28e-12!444;CL:0002620!1.37e-09!23;CL:0002334!1.05e-07!12;CL:0002494!1.40e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.11e-12;32!CL:0000192;1.86e-12;43!CL:0000187;2.38e-12;55!CL:0000134;4.26e-12;55!CL:0000723;6.38e-11;61!CL:0002620;1.45e-10;23!CL:0000048;4.17e-10;58!CL:0000057;9.92e-10;73!CL:0000393;1.25e-09;61!CL:0000211;1.25e-09;61!CL:0002320;2.33e-09;188!CL:0000499;5.25e-08;28!CL:0002334;5.39e-08;12!CL:0000034;7.48e-08;69!CL:0000327;1.71e-07;15!CL:0002494;3.93e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.19e-26,76;CL:0000680,1.10e-22,58;CL:0000056,1.10e-22,58;CL:0000355,1.10e-22,58;CL:0000048,3.41e-22,427;CL:0000187,8.91e-22,55;CL:0000723,4.23e-21,433;CL:0000034,1.06e-19,441;CL:0000393,5.75e-18,61;CL:0000211,5.75e-18,61;CL:0000192,5.79e-18,43;CL:0000514,5.79e-18,43;CL:0000359,1.92e-13,32;CL:0002620,1.26e-10,23;CL:0002320,3.57e-10,361;CL:0000134,1.32e-08,354;CL:0000499,3.96e-08,28;CL:0002334,5.93e-08,12;CL:0000327,1.32e-07,15;CL:0000222,1.88e-07,121;CL:0002494,3.97e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000514;1.86e-12;43!CL:0000355;4.25e-12;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.77e-23!83;UBERON:0002329!1.77e-23!83;UBERON:0003077!1.77e-23!83;UBERON:0003059!1.77e-23!83;UBERON:0007282!1.77e-23!83;UBERON:0009618!1.77e-23!83;UBERON:0007285!1.77e-23!83;UBERON:0002385!3.70e-22!63;UBERON:0001015!3.70e-22!63;UBERON:0000383!3.70e-22!63;UBERON:0001134!3.94e-22!61;UBERON:0002036!3.94e-22!61;UBERON:0003082!3.94e-22!61;UBERON:0004290!8.80e-22!70;UBERON:0000486!3.83e-17!82;UBERON:0005256!2.90e-13!143;UBERON:0004872!1.31e-10!84;UBERON:0002100!4.46e-10!216;UBERON:0001637!1.67e-08!42;UBERON:0003509!1.67e-08!42;UBERON:0004572!1.67e-08!42;UBERON:0001013!1.82e-08!14;UBERON:0000475!2.05e-08!365;UBERON:0004573!6.37e-08!33;UBERON:0004571!6.37e-08!33;UBERON:0002199!7.60e-08!45;UBERON:0002416!7.60e-08!45;UBERON:0000948!1.14e-07!24;UBERON:0005498!1.14e-07!24;UBERON:0004140!1.14e-07!24;UBERON:0009881!1.14e-07!24;UBERON:0004141!1.14e-07!24;UBERON:0003084!1.14e-07!24;UBERON:0007005!1.14e-07!24;UBERON:0004139!1.14e-07!24;UBERON:0004291!1.14e-07!24;UBERON:0000490!2.14e-07!138;UBERON:0002049!2.49e-07!79;UBERON:0007798!2.49e-07!79;UBERON:0007100!4.00e-07!27;UBERON:0004535!5.00e-07!110;UBERON:0001009!5.86e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.76e-09;198!UBERON:0002385;6.16e-09;31!UBERON:0001015;6.16e-09;31!UBERON:0000383;6.16e-09;31!UBERON:0001013;7.04e-09;14!UBERON:0004573;2.65e-08;33!UBERON:0004571;2.65e-08;33!UBERON:0004457;2.67e-07;9!UBERON:0000042;2.67e-07;9!UBERON:0001637;5.75e-07;42!UBERON:0003509;5.75e-07;42!UBERON:0004572;5.75e-07;42!UBERON:0003688;6.03e-07;6!UBERON:0002358;6.03e-07;6!UBERON:0003684;6.03e-07;6!UBERON:0001178;6.03e-07;6!UBERON:0002204;7.29e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,5.56e-23,62;UBERON:0002036,5.56e-23,62;UBERON:0003082,5.56e-23,62;UBERON:0007524,1.14e-22,73;UBERON:0002329,1.94e-22,71;UBERON:0003059,1.94e-22,71;UBERON:0007282,1.94e-22,71;UBERON:0004290,1.94e-22,71;UBERON:0009618,1.94e-22,71;UBERON:0003077,7.57e-22,72;UBERON:0007285,7.57e-22,72;UBERON:0002385,1.14e-21,64;UBERON:0001015,1.14e-21,64;UBERON:0000383,1.14e-21,64;UBERON:0007503,1.20e-18,78;UBERON:0000486,1.57e-18,83;UBERON:0005256,9.63e-14,122;UBERON:0003104,6.19e-13,160;UBERON:0009142,6.19e-13,160;UBERON:0002384,1.50e-10,371;UBERON:0001637,3.87e-10,42;UBERON:0003509,3.87e-10,42;UBERON:0004572,3.87e-10,42;UBERON:0004872,1.35e-09,83;UBERON:0000926,2.58e-09,315;UBERON:0004120,2.58e-09,315;UBERON:0006603,2.58e-09,315;UBERON:0002199,3.38e-09,46;UBERON:0002416,3.38e-09,46;UBERON:0004573,3.81e-09,33;UBERON:0004571,3.81e-09,33;UBERON:0001013,7.60e-09,14;UBERON:0000490,9.68e-09,148;UBERON:0002097,7.73e-08,41;UBERON:0002049,2.27e-07,78;UBERON:0007798,2.27e-07,78;UBERON:0002100,2.53e-07,199;UBERON:0002204,3.01e-07,167;UBERON:0004535,4.77e-07,109;UBERON:0003688,5.98e-07,6;UBERON:0002358,5.98e-07,6;UBERON:0003684,5.98e-07,6;UBERON:0001178,5.98e-07,6 | |||
|phase1_expression=11.4457378940451,15.4152377201508,16.3507108751327,22.0161256376887,17.4314826826642,24.4254786748103,20.2639902534648,2.52687949370732,2.61185628199839,0.245733936501509,0,0.218441372130172,2.37390280405608,1.73272894144065,2.98257638155124,4.70627602516243,2.41077811209591,3.65155045193687,6.8310591830671,1.84681587115182,3.26401105990805,3.13454721478088,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,0.670700859703636,3.45228916977532,16.9876401620746,11.5307719446255,17.0918892373772,19.0868627292264,42.823868586632,0.472674085820339,1.55210578223795,0.527008714158756,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.3455695364612,5.19185097824777,6.88527740228738,20.3654000731658,6.02936249737207,8.41016400213461,9.60740961567345,4.9333509683432,0.622422070799533,2.2900814251847,2.45192854670188,9.53551794163068,7.49028701823999,1.64025002283658,0,0,1.94283284717341,1.52664848236894,0.647491777472526,1.40450806702248,0.816616685019573,0.61417158655884,1.03325781175765,19.0080457165129,27.4466291499198,4.55080680969013,2.87447256726495,1.34668891163253,0.875829639103749,1.38532057742091,7.02364193409341,13.7919508109559,17.127138715352,2.04177929688038,5.56107870635472,17.0845911054854,12.9278459707333,13.8041904198825,6.28620428354477,7.72921620136887,11.1670113798954,15.864975230679,6.72315335612271,6.56327813034698,8.46859067509154,11.3152239773168,16.3304412557643,5.64211750074785,3.73033303083073,0,0,0,0.121973706129595,0,0.232387885739037,0.414644220061482,0,0,4.69348596989448,11.5783368874719,0,4.17931135228781,8.66255378003503,0,0,0,0,0,0,0,0,0,0,1.40241773803446,7.4083322039652,19.1111324801205,0,0,0.590789906681404,0,0,0.343135620597051,0,0,0,0,0.977424915930974,0,0,0.115930404975077,1.76113041353732,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0.381988425558278,0,0,0.411309970813294,0,0,1.90622843387113,1.74384027533312,0.8800594298514,5.68795549334222,7.15312891703765,5.071816515336,3.72313363218819,4.16029747645464,1.28603687131071,5.67396528093113,2.66422179016099,6.57698770827479,7.5967024754802,3.29296134712308,4.23457039581856,6.75244702610837,3.95975936466715,2.41151501647669,1.74306691720059,0.099972991182057,0,0,0,4.31324739884849,8.04033550838797,2.85273810081437,3.32997005335432,2.05476322550383,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,1.71768088406796,2.50085260529839,1.35632511849868,33.2753378449291,39.6112355129699,16.2433487484953,7.9656162195045,6.3198680942821,6.82222512167955,5.17365356462525,2.65690239414175,5.53107505625109,2.60650843404249,8.2236486134351,9.60801586670397,0,0,0,0,8.32177197552485,4.5358543999452,16.3751153160393,12.8908057561972,31.9952507653704,17.8113417465424,8.18731598506726,20.7501558275254,16.325987308949,0.616838775210622,6.74734556189883,1.64254312027618,2.07701771673448,3.48631135379878,0,0,0,3.90369123759663,4.73437036817464,6.29397191805236,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0.206082023295445,0.183138929636687,0.330037999682352,0,0.650060246036521,4.82051789532479,1.7400729292582,1.84858340537573,1.38153307253517,1.65403886981437,4.18938954986267,4.93056759308377,1.70453254832202,7.65675506561941,0,0,0,0,2.32422774648643,27.3886741742657,2.0911118104818,0.924100740528266,1.59691809095107,1.73986598415015,3.52116016297448,1.71749864090389,3.34942532423701,2.53103539774981,5.71890581771475,3.58256907835867,3.42351190427136,4.13664222303718,4.70969184119538,4.31693898199955,5.76527762445715,2.47406044925942,2.42618977887979,4.75530963519025,4.63384301862879,4.38870365180631,6.82397770967596,4.22600587027022,3.54899769660763,7.21167702963935,6.78048699721457,9.37321084028411,7.96126770289464,2.63070531152258,6.94530641120025,11.8061055368394,2.84074527747786,3.717881977197,3.09865162785466,0.573645408816206,1.76848273823618,5.7067368237,0.354761064070598,12.8775657531575,10.5374365747169,1.89736586882858,1.04980416073495,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,2.3874448473769,0.296964680832639,1.84296421259539,0,0,0,0,0,1.19548792950642,0.552567831062295,0,0,0,13.3747022694577,0,0,0,0.690503839458535,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,2.77020930613669,0,0,0,0,2.55200927785536,2.83952539545773,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,35.3134164811467,0,0,0,0,1.18375320854817,4.83962864194656,0.61214552326098,0.947798694427319,0,0,0,0,0,0,0,0,0,0,0,2.44617335538842,1.20390222730132,0,0,0,0.193978032976839,0,8.3612874088797,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,2.17446729717782,0.941425616810999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| ||
|short_description=p5@COL1A2 | |||
}} | }} |
Latest revision as of 02:53, 20 September 2015
Short description: | p5@COL1A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL1A2_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_J00114, X55525_5end |
EntrezGene: | COL1A2 |
HGNC: | 2198 |
UniProt: | P08123 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.19e-26 | 76 |
muscle precursor cell | 1.10e-22 | 58 |
myoblast | 1.10e-22 | 58 |
multi-potent skeletal muscle stem cell | 1.10e-22 | 58 |
multi fate stem cell | 3.41e-22 | 427 |
muscle cell | 8.91e-22 | 55 |
somatic stem cell | 4.23e-21 | 433 |
stem cell | 1.06e-19 | 441 |
electrically responsive cell | 5.75e-18 | 61 |
electrically active cell | 5.75e-18 | 61 |
smooth muscle cell | 5.79e-18 | 43 |
smooth muscle myoblast | 5.79e-18 | 43 |
vascular associated smooth muscle cell | 1.92e-13 | 32 |
skin fibroblast | 1.26e-10 | 23 |
connective tissue cell | 3.57e-10 | 361 |
mesenchymal cell | 1.32e-08 | 354 |
stromal cell | 3.96e-08 | 28 |
preadipocyte | 5.93e-08 | 12 |
extracellular matrix secreting cell | 1.32e-07 | 15 |
mesodermal cell | 1.88e-07 | 121 |
cardiocyte | 3.97e-07 | 16 |