FFCP PHASE1:Hg19::chr16:11680767..11680787,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9516 | |EntrezGene=9516 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16841 | |HGNC=16841 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000381810_5end | |association_with_transcript=0bp_to_ENST00000381810_5end | ||
|cluster_id=chr16:11680767..11680787,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_LITAF_5end | |description=CAGE_peak_1_at_LITAF_5end | ||
|id=chr16:11680767..11680787,- | |id=chr16:11680767..11680787,- | ||
|ontology_enrichment_celltype=CL:0000766!2.01e-31!76;CL:0000738!5.41e-29!140;CL:0000557!1.78e-26!71;CL:0002009!2.16e-26!65;CL:0002194!2.62e-25!63;CL:0000576!2.62e-25!63;CL:0000040!2.62e-25!63;CL:0000559!2.62e-25!63;CL:0002087!1.33e-24!119;CL:0002031!2.24e-24!124;CL:0000839!3.94e-24!70;CL:0002057!1.22e-22!42;CL:0000860!6.40e-22!45;CL:0000037!6.52e-16!172;CL:0000566!6.52e-16!172;CL:0002032!7.63e-16!165;CL:0000837!7.63e-16!165;CL:0000988!7.51e-14!182;CL:0000763!1.15e-13!112;CL:0000049!1.15e-13!112 | |ontology_enrichment_celltype=CL:0000766!2.01e-31!76;CL:0000738!5.41e-29!140;CL:0000557!1.78e-26!71;CL:0002009!2.16e-26!65;CL:0002194!2.62e-25!63;CL:0000576!2.62e-25!63;CL:0000040!2.62e-25!63;CL:0000559!2.62e-25!63;CL:0002087!1.33e-24!119;CL:0002031!2.24e-24!124;CL:0000839!3.94e-24!70;CL:0002057!1.22e-22!42;CL:0000860!6.40e-22!45;CL:0000037!6.52e-16!172;CL:0000566!6.52e-16!172;CL:0002032!7.63e-16!165;CL:0000837!7.63e-16!165;CL:0000988!7.51e-14!182;CL:0000763!1.15e-13!112;CL:0000049!1.15e-13!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.69e-19;33!CL:0002057;6.69e-19;33!CL:0000473;1.03e-18;39!CL:0000234;1.03e-18;39!CL:0000576;1.36e-14;48!CL:0000766;2.35e-13;69!CL:0002087;5.62e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.07e-32,72;CL:0000738,6.56e-29,136;CL:0002009,7.54e-27,61;CL:0000557,7.70e-27,67;CL:0000473,3.88e-26,48;CL:0000234,3.88e-26,48;CL:0002194,9.30e-26,59;CL:0000576,9.30e-26,59;CL:0000040,9.30e-26,59;CL:0000559,9.30e-26,59;CL:0002087,1.53e-24,115;CL:0000839,1.98e-24,66;CL:0002031,2.72e-24,120;CL:0000860,1.22e-22,42;CL:0002057,1.22e-22,42;CL:0000037,1.08e-15,168;CL:0002032,1.26e-15,161;CL:0000837,1.26e-15,161;CL:0000988,3.96e-14,177;CL:0000763,1.64e-13,108;CL:0000049,1.64e-13,108 | |||
|ontology_enrichment_development_v019=CL:0002057;9.86e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.14e-27!102;UBERON:0003061!1.14e-27!102;UBERON:0002193!7.07e-23!112;UBERON:0002371!3.89e-21!80;UBERON:0001474!3.02e-19!86;UBERON:0002405!7.38e-17!115;UBERON:0004765!3.10e-15!101;UBERON:0001434!3.10e-15!101;UBERON:0000178!1.57e-07!15;UBERON:0000179!1.57e-07!15;UBERON:0000463!1.57e-07!15;UBERON:0000062!4.69e-07!511;UBERON:0007023!5.62e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.60e-07;15!UBERON:0000179;1.60e-07;15!UBERON:0000463;1.60e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.35e-28,98;UBERON:0003061,9.35e-28,98;UBERON:0002193,7.84e-23,108;UBERON:0002371,3.05e-21,76;UBERON:0001474,2.89e-19,82;UBERON:0002405,6.44e-17,93;UBERON:0004765,1.07e-16,90;UBERON:0001434,3.51e-14,100;UBERON:0000178,1.57e-07,15;UBERON:0000179,1.57e-07,15;UBERON:0000463,1.57e-07,15;UBERON:0007023,4.05e-07,114 | |||
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| ||
|short_description=p1@LITAF | |short_description=p1@LITAF | ||
}} | }} |
Latest revision as of 06:34, 20 September 2015
Short description: | p1@LITAF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LITAF_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000381810_5end |
EntrezGene: | LITAF |
HGNC: | 16841 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 7.07e-32 | 72 |
leukocyte | 6.56e-29 | 136 |
macrophage dendritic cell progenitor | 7.54e-27 | 61 |
granulocyte monocyte progenitor cell | 7.70e-27 | 67 |
defensive cell | 3.88e-26 | 48 |
phagocyte | 3.88e-26 | 48 |
monopoietic cell | 9.30e-26 | 59 |
monocyte | 9.30e-26 | 59 |
monoblast | 9.30e-26 | 59 |
promonocyte | 9.30e-26 | 59 |
nongranular leukocyte | 1.53e-24 | 115 |
myeloid lineage restricted progenitor cell | 1.98e-24 | 66 |
hematopoietic lineage restricted progenitor cell | 2.72e-24 | 120 |
classical monocyte | 1.22e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.22e-22 | 42 |
hematopoietic stem cell | 1.08e-15 | 168 |
hematopoietic oligopotent progenitor cell | 1.26e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.26e-15 | 161 |
hematopoietic cell | 3.96e-14 | 177 |
myeloid cell | 1.64e-13 | 108 |
common myeloid progenitor | 1.64e-13 | 108 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.35e-28 | 98 |
blood island | 9.35e-28 | 98 |
hemolymphoid system | 7.84e-23 | 108 |
bone marrow | 3.05e-21 | 76 |
bone element | 2.89e-19 | 82 |
immune system | 6.44e-17 | 93 |
skeletal element | 1.07e-16 | 90 |
skeletal system | 3.51e-14 | 100 |
blood | 1.57e-07 | 15 |
haemolymphatic fluid | 1.57e-07 | 15 |
organism substance | 1.57e-07 | 15 |
adult organism | 4.05e-07 | 114 |