FFCP PHASE1:Hg19::chr17:39777054..39777079,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3872 | |EntrezGene=3872 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6427 | |HGNC=6427 | ||
|TSSclassifier=strong | |||
|UniProt=Q04695 | |UniProt=Q04695 | ||
|association_with_transcript=21bp_to_EF608071_5end | |association_with_transcript=21bp_to_EF608071_5end | ||
|cluster_id=chr17:39777054..39777079,- | |||
|coexpression_cluster_id=C544 | |||
|description=CAGE_peak_5_at_KRT17_5end | |description=CAGE_peak_5_at_KRT17_5end | ||
|id=chr17:39777054..39777079,- | |id=chr17:39777054..39777079,- | ||
|ontology_enrichment_celltype=CL:0002076!1.40e-19!43;CL:0000066!5.43e-19!254;CL:0002368!2.40e-13!13;CL:0000223!1.61e-12!59;CL:0002159!7.65e-10!13;CL:0000244!1.35e-09!4;CL:0000731!1.35e-09!4;CL:0002251!2.03e-08!21;CL:0002328!4.63e-08!3;CL:0000349!1.50e-07!3;CL:0002577!1.50e-07!3;CL:0002166!2.51e-07!3;CL:0002621!4.43e-07!3 | |ontology_enrichment_celltype=CL:0002076!1.40e-19!43;CL:0000066!5.43e-19!254;CL:0002368!2.40e-13!13;CL:0000223!1.61e-12!59;CL:0002159!7.65e-10!13;CL:0000244!1.35e-09!4;CL:0000731!1.35e-09!4;CL:0002251!2.03e-08!21;CL:0002328!4.63e-08!3;CL:0000349!1.50e-07!3;CL:0002577!1.50e-07!3;CL:0002166!2.51e-07!3;CL:0002621!4.43e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.13e-26;13!CL:0002076;8.45e-23;42!CL:0002328;1.05e-22;3!CL:0002202;3.11e-13;9!CL:0002632;3.11e-13;9!CL:0002231;7.67e-11;3!CL:0002577;2.32e-10;3!CL:0002252;1.53e-08;1!CL:0000244;1.84e-08;4!CL:0000731;1.84e-08;4!CL:0002336;3.05e-08;1!CL:0002261;3.05e-08;1!CL:0002170;3.05e-08;1!CL:0000622;9.03e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.23e-26,13;CL:0002076,1.36e-26,42;CL:0002328,1.17e-22,3;CL:0000223,1.36e-18,58;CL:0000066,7.94e-15,253;CL:0002202,3.65e-13,9;CL:0002632,3.65e-13,9;CL:0002231,6.16e-11,3;CL:0002577,1.97e-10,3;CL:0002252,1.84e-08,1;CL:0000244,1.84e-08,4;CL:0000731,1.84e-08,4;CL:0002336,2.84e-08,1;CL:0002261,2.84e-08,1;CL:0002170,2.84e-08,1;CL:0000622,8.65e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;3.96e-10;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3151;1.53e-08;1!DOID:3149;1.53e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.48e-08,1;DOID:3149,1.48e-08,1 | |||
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|ontology_enrichment_uberon_v019=UBERON:0004815;1.05e-22;3!UBERON:0002031;1.05e-22;3!UBERON:0002185;7.40e-14;5!UBERON:0000485;4.82e-10;7!UBERON:0000065;9.33e-10;44!UBERON:0007196;5.45e-08;15!UBERON:0001558;5.45e-08;15!UBERON:0001987;5.52e-08;4!UBERON:0005181;5.18e-07;35!UBERON:0000365;6.29e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.17e-22,3;UBERON:0002031,1.17e-22,3;UBERON:0002185,7.90e-14,5;UBERON:0004119,1.71e-12,160;UBERON:0000925,1.71e-12,160;UBERON:0006595,1.71e-12,160;UBERON:0001004,9.04e-10,74;UBERON:0000065,2.21e-09,54;UBERON:0005153,9.03e-09,37;UBERON:0001987,4.88e-08,4;UBERON:0004340,4.88e-08,4;UBERON:0007196,5.98e-08,15;UBERON:0001558,5.98e-08,15;UBERON:0000485,6.75e-08,9;UBERON:0005178,4.10e-07,34;UBERON:0002224,4.10e-07,34;UBERON:0000365,6.30e-07,5;UBERON:0005181,6.78e-07,35;UBERON:0005157,9.95e-07,47 | |||
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| ||
|short_description=p5@KRT17 | |short_description=p5@KRT17 | ||
}} | }} |
Latest revision as of 06:38, 20 September 2015
Short description: | p5@KRT17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_KRT17_5end |
Coexpression cluster: | C544_nasal_Keratinocyte_Esophageal_Urothelial_Placental_Corneal_Prostate |
Association with transcript: | 21bp_to_EF608071_5end |
EntrezGene: | KRT17 |
HGNC: | 6427 |
UniProt: | Q04695 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.23e-26 | 13 |
endo-epithelial cell | 1.36e-26 | 42 |
bronchial epithelial cell | 1.17e-22 | 3 |
endodermal cell | 1.36e-18 | 58 |
epithelial cell | 7.94e-15 | 253 |
epithelial cell of tracheobronchial tree | 3.65e-13 | 9 |
epithelial cell of lower respiratory tract | 3.65e-13 | 9 |
epithelial cell of prostate | 6.16e-11 | 3 |
placental epithelial cell | 1.97e-10 | 3 |
epithelial cell of esophagus | 1.84e-08 | 1 |
transitional epithelial cell | 1.84e-08 | 4 |
urothelial cell | 1.84e-08 | 4 |
buccal mucosa cell | 2.84e-08 | 1 |
endothelial cell of viscerocranial mucosa | 2.84e-08 | 1 |
keratinized cell of the oral mucosa | 2.84e-08 | 1 |
acinar cell | 8.65e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.17e-22 | 3 |
epithelium of bronchus | 1.17e-22 | 3 |
bronchus | 7.90e-14 | 5 |
endoderm-derived structure | 1.71e-12 | 160 |
endoderm | 1.71e-12 | 160 |
presumptive endoderm | 1.71e-12 | 160 |
respiratory system | 9.04e-10 | 74 |
respiratory tract | 2.21e-09 | 54 |
epithelial bud | 9.03e-09 | 37 |
placenta | 4.88e-08 | 4 |
allantois | 4.88e-08 | 4 |
tracheobronchial tree | 5.98e-08 | 15 |
lower respiratory tract | 5.98e-08 | 15 |
simple columnar epithelium | 6.75e-08 | 9 |
thoracic cavity element | 4.10e-07 | 34 |
thoracic cavity | 4.10e-07 | 34 |
urothelium | 6.30e-07 | 5 |
thoracic segment organ | 6.78e-07 | 35 |
epithelial fold | 9.95e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.48e-08 | 1 |
keratoacanthoma | 1.48e-08 | 1 |