FFCP PHASE1:Hg19::chr17:39968862..39968880,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10609 | |EntrezGene=10609 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16946 | |HGNC=16946 | ||
|TSSclassifier=strong | |||
|UniProt=Q92791 | |UniProt=Q92791 | ||
|association_with_transcript=-7bp_to_ENST00000355468,uc002hxu.2_5end | |association_with_transcript=-7bp_to_ENST00000355468,uc002hxu.2_5end | ||
|cluster_id=chr17:39968862..39968880,- | |||
|description=CAGE_peak_3_at_LEPREL4_5end | |description=CAGE_peak_3_at_LEPREL4_5end | ||
|id=chr17:39968862..39968880,- | |id=chr17:39968862..39968880,- | ||
|ontology_enrichment_celltype=CL:0000055!7.28e-29!180;CL:0000057!1.70e-14!75;CL:0002321!1.04e-12!248;CL:0000220!2.40e-12!246;CL:0000183!6.31e-12!59;CL:0000680!4.38e-11!57;CL:0000056!4.38e-11!57;CL:0000355!4.38e-11!57;CL:0000187!5.27e-11!54;CL:0000393!2.43e-10!60;CL:0000211!2.43e-10!60;CL:0000192!2.28e-09!42;CL:0000514!2.28e-09!42;CL:0000548!3.13e-08!679;CL:0000004!3.13e-08!679;CL:0000255!3.13e-08!679;CL:0000359!5.28e-08!32;CL:0000222!7.00e-08!119;CL:0000012!7.82e-08!682;CL:0002620!2.76e-07!23 | |ontology_enrichment_celltype=CL:0000055!7.28e-29!180;CL:0000057!1.70e-14!75;CL:0002321!1.04e-12!248;CL:0000220!2.40e-12!246;CL:0000183!6.31e-12!59;CL:0000680!4.38e-11!57;CL:0000056!4.38e-11!57;CL:0000355!4.38e-11!57;CL:0000187!5.27e-11!54;CL:0000393!2.43e-10!60;CL:0000211!2.43e-10!60;CL:0000192!2.28e-09!42;CL:0000514!2.28e-09!42;CL:0000548!3.13e-08!679;CL:0000004!3.13e-08!679;CL:0000255!3.13e-08!679;CL:0000359!5.28e-08!32;CL:0000222!7.00e-08!119;CL:0000012!7.82e-08!682;CL:0002620!2.76e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.70e-08;23!CL:0000057;1.36e-07;73!CL:0000359;1.53e-07;32!CL:0000048;5.47e-07;58 | |ontology_enrichment_celltype_v019=CL:0002620;1.70e-08;23!CL:0000057;1.36e-07;73!CL:0000359;1.53e-07;32!CL:0000048;5.47e-07;58 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.92e-12,76;CL:0000680,2.80e-09,58;CL:0000056,2.80e-09,58;CL:0000355,2.80e-09,58;CL:0000187,4.31e-09,55;CL:0000192,4.32e-09,43;CL:0000514,4.32e-09,43;CL:0000359,2.39e-08,32;CL:0000393,7.42e-08,61;CL:0000211,7.42e-08,61;CL:0002620,8.65e-08,23 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!1.45e-14!238;UBERON:0009142!1.45e-14!238;UBERON:0000914!2.23e-13!83;UBERON:0002329!2.23e-13!83;UBERON:0003077!2.23e-13!83;UBERON:0003059!2.23e-13!83;UBERON:0007282!2.23e-13!83;UBERON:0009618!2.23e-13!83;UBERON:0007285!2.23e-13!83;UBERON:0004290!3.77e-13!70;UBERON:0002100!8.37e-13!216;UBERON:0005256!2.68e-12!143;UBERON:0000475!4.78e-12!365;UBERON:0000481!1.03e-11!347;UBERON:0000486!4.07e-11!82;UBERON:0001134!1.41e-10!61;UBERON:0002036!1.41e-10!61;UBERON:0003082!1.41e-10!61;UBERON:0000119!2.02e-10!312;UBERON:0000490!2.87e-10!138;UBERON:0002385!7.67e-10!63;UBERON:0001015!7.67e-10!63;UBERON:0000383!7.67e-10!63;UBERON:0000483!1.15e-09!309;UBERON:0001637!3.88e-09!42;UBERON:0003509!3.88e-09!42;UBERON:0004572!3.88e-09!42;UBERON:0002049!9.05e-09!79;UBERON:0007798!9.05e-09!79;UBERON:0003914!1.09e-08!118;UBERON:0004872!1.17e-08!84;UBERON:0000468!1.93e-08!659;UBERON:0000467!4.22e-07!625;UBERON:0001981!4.38e-07!60;UBERON:0007500!4.38e-07!60;UBERON:0004537!4.38e-07!60;UBERON:0006965!4.38e-07!60;UBERON:0000477!5.00e-07!286;UBERON:0002097!5.98e-07!40;UBERON:0002199!6.13e-07!45;UBERON:0002416!6.13e-07!45;UBERON:0000480!6.27e-07!626;UBERON:0004573!9.67e-07!33;UBERON:0004571!9.67e-07!33 | |ontology_enrichment_uberon=UBERON:0003104!1.45e-14!238;UBERON:0009142!1.45e-14!238;UBERON:0000914!2.23e-13!83;UBERON:0002329!2.23e-13!83;UBERON:0003077!2.23e-13!83;UBERON:0003059!2.23e-13!83;UBERON:0007282!2.23e-13!83;UBERON:0009618!2.23e-13!83;UBERON:0007285!2.23e-13!83;UBERON:0004290!3.77e-13!70;UBERON:0002100!8.37e-13!216;UBERON:0005256!2.68e-12!143;UBERON:0000475!4.78e-12!365;UBERON:0000481!1.03e-11!347;UBERON:0000486!4.07e-11!82;UBERON:0001134!1.41e-10!61;UBERON:0002036!1.41e-10!61;UBERON:0003082!1.41e-10!61;UBERON:0000119!2.02e-10!312;UBERON:0000490!2.87e-10!138;UBERON:0002385!7.67e-10!63;UBERON:0001015!7.67e-10!63;UBERON:0000383!7.67e-10!63;UBERON:0000483!1.15e-09!309;UBERON:0001637!3.88e-09!42;UBERON:0003509!3.88e-09!42;UBERON:0004572!3.88e-09!42;UBERON:0002049!9.05e-09!79;UBERON:0007798!9.05e-09!79;UBERON:0003914!1.09e-08!118;UBERON:0004872!1.17e-08!84;UBERON:0000468!1.93e-08!659;UBERON:0000467!4.22e-07!625;UBERON:0001981!4.38e-07!60;UBERON:0007500!4.38e-07!60;UBERON:0004537!4.38e-07!60;UBERON:0006965!4.38e-07!60;UBERON:0000477!5.00e-07!286;UBERON:0002097!5.98e-07!40;UBERON:0002199!6.13e-07!45;UBERON:0002416!6.13e-07!45;UBERON:0000480!6.27e-07!626;UBERON:0004573!9.67e-07!33;UBERON:0004571!9.67e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.37e-07;9!UBERON:0001557;3.37e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0001737;3.37e-07;9!UBERON:0001557;3.37e-07;9 | ||
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|phase1_expression=0.54503513781167,0.856402095563933,0.845726424575827,0,0.446961094427288,2.61701557230111,0,0.631719873426831,0.522371256399677,1.22866968250754,2.09340350391728,0.873765488520689,1.31883489114227,0.495065411840187,1.32558950291166,1.34465029290355,1.20538905604795,1.46062018077475,0,1.47745269692145,1.22400414746552,1.88072832886853,1.14494394852423,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0.919421224478927,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.895037932904712,0.722878304769133,1.00267582127178,0.579386075843295,0,2.91980922181582,0.850813354476611,1.77383517970051,1.22968699970376,0.130979075497713,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0.79504962946682,0.860234595106124,0.694281003215189,1.13061588384802,0.419499436209906,0.825354125820202,0.835979866147242,0.258416759169329,0.35576626268671,0,0.402829317109147,0,0.732186172644509,0.735326160691737,0.81014194788176,0.267899184852239,0.898117490504679,0.112611480483322,0,0,0.916008719652036,0,0,0.872188104285069,2.48485975847659,2.02608818663328,0.926864265692532,2.58152958673932,2.12801029319014,1.68203280042692,2.1349799145941,1.72667283892012,0.622422070799533,0.67355336034844,1.14423332179421,3.63257826347835,3.45705554687999,0.234321431833797,0.936480230490962,1.1409436430889,0.298897361103602,1.05691048779388,1.45685649931318,1.40450806702248,1.22492502752936,0.61417158655884,0.516628905878827,1.18800285728205,0,0.910161361938026,0.718618141816238,2.18836948140286,0.500474079487857,1.10825646193673,0,0.612975591598039,1.05166641234618,2.1552114800404,2.33206526395521,1.06778694409284,1.69545520927649,2.40072876867522,1.13357782162283,1.54584324027377,1.48893485065272,1.35021065793013,0.389748020644795,1.26216887122057,1.47279837827679,1.13152239773168,2.13005755509969,0.906768884048762,1.01736355386293,0.57978255948989,0,0,0.731842236777572,1.45782745153634,0.464775771478074,1.34759371519982,0.756962552626885,0.72995471815166,3.12899064659632,1.92972281457866,2.76269842704961,0.464367928031979,0.721879481669586,1.18306800039844,1.01150814046861,1.92808823906786,1.54411561825352,1.52515610864684,1.42362371466658,2.56179485504312,1.96221465125346,2.69323009862473,0,1.40241773803446,0.8231480226628,2.94017422771084,0,0,0,0,1.35287282397425,0.343135620597051,0.439001141634502,0,0,0.925884451585296,0.977424915930974,1.03993478527958,0,0.811512834825538,1.40890433082986,0.144366447761074,0.462985512576611,0.570762456703795,0,0,0,0,0,0,0.671928512795438,0.425325291727159,0.358234090811393,0.290633938513962,1.15014803749563,0,0.088048434013226,0,0,0,1.26995788584338,1.14596527667483,0,0,1.43958489784653,2.40274446275134,0.571652865261156,1.34557301214433,2.1798003441664,1.466765716419,0.904902010304444,3.57656445851882,0,1.86156681609409,0,0.771622122786426,1.41849132023278,1.3321108950805,1.00084595560703,2.17048642156577,4.11620168390384,0.977208552881205,1.06617584622764,1.58390374586686,0,0,0.499864955910285,0,0,0,0.958499421966331,0,0,1.01346914667305,1.02738161275192,0.179060963239896,0.112085143993527,0,0,0,1.52456774533478,0,0,0.670065061337395,0,0,0,0,0.736148950314839,0,0.813795071099207,1.03985430765404,0.535286966391485,0.315404830067869,0.937131319941706,0.601892199455438,0,1.03473071292505,0.664225598535437,2.21243002250044,0.781952530212746,6.06983588134496,4.11772108573027,0,0,0,1.81876542867756,0,1.20956117331872,0.744323423456331,1.99500565274481,1.12264037773229,0.768834895534206,0,1.93024705372329,2.96836132889982,1.23367755042124,1.24293207719189,0.821271560138091,0,1.39452454151951,1.93375119346596,0.601519410909855,1.28913384510255,1.03333003348146,0.728364672026868,0.393373244878272,0.902399225814824,0.385076685522074,0.784349769176855,1.46139224653261,1.16106791782163,0,0.680374821106063,1.29549549661284,0,1.62567862526312,0,0.509752546090077,0,0.447749509444357,0,0,0.512900250232778,0.328014645699706,0,0.206082023295445,0.640986253728404,0.577566499444116,1.14853107599234,0.650060246036521,1.6068392984416,0.870036464629098,0.462145851343933,1.38153307253517,1.65403886981437,0.751941714077915,1.0151168573996,0.852266274161009,2.93805717634233,0.165284915360978,0.192190067365106,1.02090169995667,0.4046311234222,0.464845549297286,1.88887408098384,2.0911118104818,0.308033580176089,1.59691809095107,0.869932992075073,1.29726953372744,1.14499909393593,3.34942532423701,0.949138274156178,0.571890581771475,0,0.855877976067841,0.636406495851874,1.56989728039846,1.07923474549989,1.37268514868027,1.64937363283961,1.41527737101321,1.58510321173008,0.421258456238981,2.43816869544795,1.46228093778771,0,0.9554993798559,1.41405431953713,1.13008116620243,1.10273068709225,1.32687795048244,0.876901770507525,1.15755106853338,0.655894752046633,2.02910376962704,1.54911749049875,1.971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| ||
|short_description=p3@LEPREL4 | |short_description=p3@LEPREL4 | ||
}} | }} |
Latest revision as of 07:20, 20 September 2015
Short description: | p3@LEPREL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LEPREL4_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_ENST00000355468, uc002hxu.2_5end |
EntrezGene: | LEPREL4 |
HGNC: | 16946 |
UniProt: | Q92791 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.92e-12 | 76 |
muscle precursor cell | 2.80e-09 | 58 |
myoblast | 2.80e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.80e-09 | 58 |
muscle cell | 4.31e-09 | 55 |
smooth muscle cell | 4.32e-09 | 43 |
smooth muscle myoblast | 4.32e-09 | 43 |
vascular associated smooth muscle cell | 2.39e-08 | 32 |
electrically responsive cell | 7.42e-08 | 61 |
electrically active cell | 7.42e-08 | 61 |
skin fibroblast | 8.65e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.72e-12 | 73 |
epithelial vesicle | 2.37e-12 | 78 |
somite | 3.54e-12 | 71 |
presomitic mesoderm | 3.54e-12 | 71 |
presumptive segmental plate | 3.54e-12 | 71 |
dermomyotome | 3.54e-12 | 71 |
trunk paraxial mesoderm | 3.54e-12 | 71 |
paraxial mesoderm | 7.93e-12 | 72 |
presumptive paraxial mesoderm | 7.93e-12 | 72 |
mesenchyme | 1.23e-11 | 160 |
entire embryonic mesenchyme | 1.23e-11 | 160 |
trunk mesenchyme | 1.16e-10 | 122 |
skeletal muscle tissue | 1.83e-09 | 62 |
striated muscle tissue | 1.83e-09 | 62 |
myotome | 1.83e-09 | 62 |
multilaminar epithelium | 2.01e-09 | 83 |
muscle tissue | 7.58e-09 | 64 |
musculature | 7.58e-09 | 64 |
musculature of body | 7.58e-09 | 64 |
unilaminar epithelium | 2.59e-08 | 148 |
larynx | 1.06e-07 | 9 |
trunk | 1.97e-07 | 199 |