FFCP PHASE1:Hg19::chr6:128222238..128222249,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=387357 | |EntrezGene=387357 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21569 | |HGNC=21569 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N1K5,F5H1J9 | |UniProt=Q8N1K5,F5H1J9 | ||
|association_with_transcript=-12bp_to_ENST00000368248,ENST00000543064,NM_001010923,NM_001164685,uc011ebt.1_5end | |association_with_transcript=-12bp_to_ENST00000368248,ENST00000543064,NM_001010923,NM_001164685,uc011ebt.1_5end | ||
|cluster_id=chr6:128222238..128222249,- | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_5_at_THEMIS_5end | |description=CAGE_peak_5_at_THEMIS_5end | ||
|id=chr6:128222238..128222249,- | |id=chr6:128222238..128222249,- | ||
|ontology_enrichment_celltype=CL:0000084!7.69e-39!25;CL:0000827!7.69e-39!25;CL:0000791!5.62e-37!18;CL:0000789!5.62e-37!18;CL:0002420!5.62e-37!18;CL:0002419!5.62e-37!18;CL:0000790!5.62e-37!18;CL:0000838!1.14e-27!52;CL:0000542!5.59e-27!53;CL:0000051!5.59e-27!53;CL:0000625!4.28e-24!11;CL:0000738!5.46e-15!140;CL:0002087!3.08e-13!119;CL:0000624!2.06e-12!6;CL:0000037!3.33e-10!172;CL:0000566!3.33e-10!172;CL:0002031!1.08e-09!124;CL:0000988!4.40e-09!182;CL:0002032!4.02e-08!165;CL:0000837!4.02e-08!165;CL:0000623!4.47e-07!3;CL:0000825!4.47e-07!3;CL:0000842!4.86e-07!3;CL:0000898!6.11e-07!3 | |ontology_enrichment_celltype=CL:0000084!7.69e-39!25;CL:0000827!7.69e-39!25;CL:0000791!5.62e-37!18;CL:0000789!5.62e-37!18;CL:0002420!5.62e-37!18;CL:0002419!5.62e-37!18;CL:0000790!5.62e-37!18;CL:0000838!1.14e-27!52;CL:0000542!5.59e-27!53;CL:0000051!5.59e-27!53;CL:0000625!4.28e-24!11;CL:0000738!5.46e-15!140;CL:0002087!3.08e-13!119;CL:0000624!2.06e-12!6;CL:0000037!3.33e-10!172;CL:0000566!3.33e-10!172;CL:0002031!1.08e-09!124;CL:0000988!4.40e-09!182;CL:0002032!4.02e-08!165;CL:0000837!4.02e-08!165;CL:0000623!4.47e-07!3;CL:0000825!4.47e-07!3;CL:0000842!4.86e-07!3;CL:0000898!6.11e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000625;6.45e-52;11!CL:0000084;1.03e-46;25!CL:0000791;2.92e-43;18!CL:0000789;2.92e-43;18!CL:0002419;2.92e-43;18!CL:0000542;1.89e-11;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,6.63e-52,11;CL:0000084,1.05e-46,25;CL:0000827,1.05e-46,25;CL:0000791,3.19e-43,18;CL:0000789,3.19e-43,18;CL:0002420,3.19e-43,18;CL:0002419,3.19e-43,18;CL:0000790,3.19e-43,18;CL:0000838,1.38e-20,52;CL:0000542,3.93e-20,53;CL:0000051,3.93e-20,53;CL:0002087,1.99e-08,115;CL:0000738,1.30e-07,136;CL:0002031,6.73e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;2.92e-43;18!CL:0000051;1.89e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.24e-11!7;UBERON:0002370!5.61e-10!4;UBERON:0005058!5.61e-10!4;UBERON:0009113!5.61e-10!4;UBERON:0003295!5.61e-10!4;UBERON:0005562!5.61e-10!4;UBERON:0007023!3.52e-08!115;UBERON:0000974!1.36e-07!10;UBERON:0000178!1.36e-07!15;UBERON:0000179!1.36e-07!15;UBERON:0000463!1.36e-07!15;UBERON:0001042!1.39e-07!10;UBERON:0009145!1.39e-07!10;UBERON:0006562!8.16e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;8.78e-12;2!UBERON:0005058;8.78e-12;2!UBERON:0009113;8.78e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.91e-12,4;UBERON:0005058,1.91e-12,4;UBERON:0009113,1.91e-12,4;UBERON:0003295,1.91e-12,4;UBERON:0005562,1.91e-12,4;UBERON:0003351,1.94e-08,6;UBERON:0003408,2.36e-08,10;UBERON:0004177,2.75e-07,7;UBERON:0005057,2.75e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0,0.393364276848904,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0.32389366601898,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,1.180258620683,0.786021525498329,0.822405995998037,2.17342444007882,0.651844533267181,0.473447805734733,3.89653456815823,2.89667187901451,0.883817722424512,0.886135578334485,1.35401931882508,0.896639238079726,1.04047478047903,8.55077103939116,9.39590060471884,12.1717296008722,4.00373720537563,2.94294910898684,4.18142095219907,8.49820070231746,0.766440987203842,3.09264700934367,4.30133476433155,3.18565414324097,3.25541726928209,1.90090408889675,2.86092726247768,2.94369205655162,7.49584359314075,3.31488152861624,2.46338399076314,1.00803371612366,2.40696176205157,3.33096128930438,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.94633578946371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25046917581229,0.985153801009636,0.862510299438069,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,1.38745825144478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,1.13929437434833,0.238231775457789,0,0,0.540031437238115,0,0,0,0,0,0,3.48595032407229,1.27541018183058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,1.10513566212459,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,8.17546385565892,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.265729680626726,0,0,0,0,0.79994958341972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0,0,0,0,0,0,0,0,0.469919589899268,0.45120521581504,0,0,0,0,0,1.37618785021362,0.143339583151451,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.952257725854961,15.0492159917894,14.0909601451597,0,0.0636471582781649,0,0.653150243690884,0,0.336760265072938,0.215166616178029,0,0,0,0,0,0,0,0,0,2.81783311027437,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0,0.393364276848904,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0.32389366601898,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,1.180258620683,0.786021525498329,0.822405995998037,2.17342444007882,0.651844533267181,0.473447805734733,3.89653456815823,2.89667187901451,0.883817722424512,0.886135578334485,1.35401931882508,0.896639238079726,1.04047478047903,8.55077103939116,9.39590060471884,12.1717296008722,4.00373720537563,2.94294910898684,4.18142095219907,8.49820070231746,0.766440987203842,3.09264700934367,4.30133476433155,3.18565414324097,3.25541726928209,1.90090408889675,2.86092726247768,2.94369205655162,7.49584359314075,3.31488152861624,2.46338399076314,1.00803371612366,2.40696176205157,3.33096128930438,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.94633578946371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25046917581229,0.985153801009636,0.862510299438069,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,1.38745825144478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,1.13929437434833,0.238231775457789,0,0,0.540031437238115,0,0,0,0,0,0,3.48595032407229,1.27541018183058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,1.10513566212459,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,8.17546385565892,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.265729680626726,0,0,0,0,0.79994958341972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0,0,0,0,0,0,0,0,0.469919589899268,0.45120521581504,0,0,0,0,0,1.37618785021362,0.143339583151451,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.952257725854961,15.0492159917894,14.0909601451597,0,0.0636471582781649,0,0.653150243690884,0,0.336760265072938,0.215166616178029,0,0,0,0,0,0,0,0,0,2.81783311027437,0 | ||
|short_description=p5@THEMIS | |short_description=p5@THEMIS | ||
}} | }} |
Latest revision as of 15:20, 24 September 2015
Short description: | p5@THEMIS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_THEMIS_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | -12bp_to_ENST00000368248, ENST00000543064, NM_001010923, NM_001164685, uc011ebt.1_5end |
EntrezGene: | THEMIS |
HGNC: | 21569 |
UniProt: | Q8N1K5F5H1J9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 6.63e-52 | 11 |
T cell | 1.05e-46 | 25 |
pro-T cell | 1.05e-46 | 25 |
mature alpha-beta T cell | 3.19e-43 | 18 |
alpha-beta T cell | 3.19e-43 | 18 |
immature T cell | 3.19e-43 | 18 |
mature T cell | 3.19e-43 | 18 |
immature alpha-beta T cell | 3.19e-43 | 18 |
lymphoid lineage restricted progenitor cell | 1.38e-20 | 52 |
lymphocyte | 3.93e-20 | 53 |
common lymphoid progenitor | 3.93e-20 | 53 |
nongranular leukocyte | 1.99e-08 | 115 |
leukocyte | 1.30e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 6.73e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.91e-12 | 4 |
hemolymphoid system gland | 1.91e-12 | 4 |
thymic region | 1.91e-12 | 4 |
pharyngeal gland | 1.91e-12 | 4 |
thymus primordium | 1.91e-12 | 4 |
pharyngeal epithelium | 1.94e-08 | 6 |
gland of gut | 2.36e-08 | 10 |
hemopoietic organ | 2.75e-07 | 7 |
immune organ | 2.75e-07 | 7 |