FFCP PHASE1:Hg19::chr6:129204259..129204300,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3908 | |EntrezGene=3908 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6482 | |HGNC=6482 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAH5,A6NGS5,P24043,Q59H37 | |UniProt=F8WAH5,A6NGS5,P24043,Q59H37 | ||
|association_with_transcript=0bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end | |association_with_transcript=0bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end | ||
|cluster_id=chr6:129204259..129204300,+ | |||
|coexpression_cluster_id=C4556 | |||
|description=CAGE_peak_1_at_LAMA2_5end | |description=CAGE_peak_1_at_LAMA2_5end | ||
|id=chr6:129204259..129204300,+ | |id=chr6:129204259..129204300,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.18e-20!180;CL:0000057!2.25e-15!75;CL:0000680!1.76e-10!57;CL:0000056!1.76e-10!57;CL:0000355!1.76e-10!57;CL:0000183!2.95e-09!59;CL:0000187!3.69e-09!54;CL:0000136!1.27e-08!15;CL:0000393!3.66e-08!60;CL:0000211!3.66e-08!60;CL:0002620!1.53e-07!23 | |ontology_enrichment_celltype=CL:0000055!3.18e-20!180;CL:0000057!2.25e-15!75;CL:0000680!1.76e-10!57;CL:0000056!1.76e-10!57;CL:0000355!1.76e-10!57;CL:0000183!2.95e-09!59;CL:0000187!3.69e-09!54;CL:0000136!1.27e-08!15;CL:0000393!3.66e-08!60;CL:0000211!3.66e-08!60;CL:0002620!1.53e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0000136;3.67e-08;13!CL:0002620;6.67e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.86e-16,76;CL:0000680,1.78e-11,58;CL:0000056,1.78e-11,58;CL:0000355,1.78e-11,58;CL:0000187,4.63e-10,55;CL:0000136,4.88e-09,15;CL:0000393,9.36e-09,61;CL:0000211,9.36e-09,61;CL:0002620,6.79e-08,23 | |||
|ontology_enrichment_development_v019=CL:0000355;5.78e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.35e-26!115;UBERON:0000475!6.00e-20!365;UBERON:0000468!8.46e-14!659;UBERON:0004290!1.87e-13!70;UBERON:0002385!3.38e-13!63;UBERON:0001015!3.38e-13!63;UBERON:0000383!3.38e-13!63;UBERON:0000914!5.76e-13!83;UBERON:0002329!5.76e-13!83;UBERON:0003077!5.76e-13!83;UBERON:0003059!5.76e-13!83;UBERON:0007282!5.76e-13!83;UBERON:0009618!5.76e-13!83;UBERON:0007285!5.76e-13!83;UBERON:0000119!1.02e-12!312;UBERON:0007100!1.17e-12!27;UBERON:0001134!1.54e-12!61;UBERON:0002036!1.54e-12!61;UBERON:0003082!1.54e-12!61;UBERON:0000481!1.59e-12!347;UBERON:0000483!5.65e-12!309;UBERON:0002616!1.26e-11!59;UBERON:0000477!2.12e-11!286;UBERON:0001049!9.65e-11!57;UBERON:0005068!9.65e-11!57;UBERON:0006241!9.65e-11!57;UBERON:0007135!9.65e-11!57;UBERON:0000948!1.35e-10!24;UBERON:0005498!1.35e-10!24;UBERON:0004140!1.35e-10!24;UBERON:0009881!1.35e-10!24;UBERON:0004141!1.35e-10!24;UBERON:0003084!1.35e-10!24;UBERON:0007005!1.35e-10!24;UBERON:0004139!1.35e-10!24;UBERON:0004291!1.35e-10!24;UBERON:0003075!2.19e-10!86;UBERON:0007284!2.19e-10!86;UBERON:0000486!2.65e-10!82;UBERON:0005743!4.93e-10!86;UBERON:0004111!5.16e-10!241;UBERON:0001017!7.36e-10!82;UBERON:0000955!1.43e-09!69;UBERON:0006238!1.43e-09!69;UBERON:0000467!1.53e-09!625;UBERON:0002346!2.10e-09!90;UBERON:0000480!2.27e-09!626;UBERON:0000073!1.02e-08!94;UBERON:0001016!1.02e-08!94;UBERON:0000479!1.06e-08!787;UBERON:0000025!1.09e-08!194;UBERON:0000153!5.33e-08!129;UBERON:0007811!5.33e-08!129;UBERON:0005256!7.53e-08!143;UBERON:0000033!9.29e-08!123;UBERON:0004872!1.40e-07!84;UBERON:0003080!2.59e-07!42;UBERON:0000062!4.19e-07!511;UBERON:0002100!5.04e-07!216;UBERON:0003103!5.05e-07!69;UBERON:0001013!7.84e-07!14;UBERON:0002780!7.88e-07!41;UBERON:0001890!7.88e-07!41;UBERON:0006240!7.88e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;5.39e-13;25!UBERON:0000948;8.56e-11;22!UBERON:0002385;4.73e-09;31!UBERON:0001015;4.73e-09;31!UBERON:0000383;4.73e-09;31!UBERON:0001134;1.03e-08;16!UBERON:0002036;1.03e-08;16!UBERON:0007023;6.71e-08;114!UBERON:0001013;3.85e-07;14 | |||
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|phase1_expression=254.53140935805,99.7708441331981,190.429399933657,102.074764320193,121.573417684222,32.2765253917136,25.3299878168311,80.2284239252075,45.7074849349717,1.47440361900905,0.697801167972428,0,0,3.21792517696121,5.30235801164665,0,0,0,0,5.78668972960903,4.28401451612931,3.76145665773705,2.57612388417951,0.547497700291537,3.76627918784408,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,26.6375781158682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,426.662016049433,24.1452309493309,14.8320571738495,10.843174571537,14.0374614978049,11.7325680358267,21.4727205703797,5.83961844363163,3.78139268656271,1.55210578223795,1.58102614247627,18.2715810319309,0,0.370784442784429,0,0,0,0,0,0,0.79504962946682,1.72046919021225,0.694281003215189,1.69592382577203,0,0.275118041940067,2.71693456497854,0.258416759169329,0.35576626268671,2.00832367658802,0.402829317109147,0.760272105718513,0.488124115096339,0,12.1521292182264,0,0,0,0,0,0,0,0,0,32.800148811891,14.0559867947684,31.9106125759857,153.170755479867,9.22137793715728,18.5023608046961,2.1349799145941,3.94668077467456,99.5875313279252,41.0867549812549,37.2693139098686,170.428463528193,164.78631440128,6.56100009134631,10.3012825354006,3.4228309292667,8.36912611090086,5.51942143625695,3.0755859429945,2.52811452064047,10.8201710765093,1.59684612505298,16.0154960822436,27.3240657174872,19.2868204837274,8.19145225744224,2.87447256726495,1.68336113954066,2.50237039743928,11.3596287348515,8.34057479673592,4.90380473278431,12.7702350070607,7.14622753908133,40.3626680299939,34.8098543774265,30.0943299646578,57.6174904482052,15.1487217980505,69.3053052722742,34.8038521340073,35.6118061029072,11.0103815832154,33.8261257487113,25.4057720252746,31.8442731933059,104.727829792401,15.7173273235119,8.13890843090341,0,0,0,1.09776335516636,0.662648841607426,1.16193942869518,0.621966330092223,0.756962552626885,2.18986415445498,20.3384392028761,9.64861407289328,8.28809528114883,73.8345005570847,48.3659252718622,0,0,0,0,0,0,0.134831308160164,0,0,0,0,2.4694440679884,10.2906097969879,1.26755034821831,0,9.45263850690247,0,0,1.88724591328378,0,0,0.100528972411631,0,2.28065813717227,5.19967392639789,0,1.04337364477569,16.6720345814867,2.02113026865503,0.462985512576611,2.28304982681518,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.621984346622316,1.00883967391873,1.76739406796932,0.190493682876507,0,0,3.4214489204541,0.411309970813294,0,0.285826432630578,16.7075315674587,36.1846857131622,16.5011143097138,9.56610696607556,71.5312891703765,9.298330278116,17.2859775780166,15.6011155367049,0.771622122786426,1.41849132023278,1.0656887160644,64.3400971461664,51.0064309067956,3.29296134712308,7.49193223875591,41.2254660541353,6.33561498346743,3.31583314765545,2.61460037580088,0.599837947092342,0,0,0,1.91699884393266,0,15.690059554479,49.5152068803121,31.643353672759,66.4316173620013,0,0,0,0,1.27047312111232,0,0,0.502548796003046,0,0,0,0,8.09763845346323,12.5042630264919,2.98391526069709,2.9115920614313,5.53129865271201,36.7446627029068,20.031181963754,15.0473049863859,29.562975527278,18.6251528326509,3.32112799267718,2.02806085395873,11.6424043387231,31.3281851940385,35.0006292287073,0,0,0,0,1.66435439510497,0.30239029332968,72.6955876909016,58.1620878761757,26.1013887822758,67.4011925084987,35.8195074346692,22.3586950389614,13.3576259800492,9.7152107095673,14.9151849263027,17.5752113869552,34.7900467553026,11.388617089076,0,0,0,29.0480553856455,32.7764102412091,50.4828997593783,0,0.231046011313244,1.56869953835371,0,0.105551628892876,0,0,0.647747748306418,0,0.270946437543853,1.50506932156456,0,0,0,0.219259876645935,0,2.56450125116389,1.96808787419823,1.30151357865721,49.2536035676112,0,0,0,0,25.7094287750655,25.0377160376596,7.24028500438829,12.1267903033642,11.164762371247,53.7101224341368,31.6136392733018,11.5055947011736,32.6747570823526,0,0.192190067365106,0,0,2.78907329578371,205.257650133577,20.2140808346574,11.7052760466914,11.1784266366575,36.5371856671531,6.85699610684504,4.15062171551775,41.6817373682827,10.440521015718,15.0597853199822,2.81487570442467,53.920312492274,18.4557883797043,4.70969184119538,28.599720755747,24.982869705981,13.3128014650626,7.27856933663938,19.021238540761,12.6377536871694,3.41343617362713,9.01739911635752,14.7910205459458,66.0659571214651,83.9948265805054,18.0812986592388,23.1573444289372,13.2687795048244,6.13831239355268,2.89387767133344,26.8916848339119,0,1.239293992399,0,6.88374490579447,6.68093478889224,0.35667105148125,11.7071151143297,10.7664894001809,20.4162833635139,5.69209760648573,3.14941248220485,0,0,0,52.2498094311124,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,105.778905434307,0,0,0,0.47748896947538,0,0,4.97073823883149,4.64209074154692,0,0,0,36.4623818499458,10.4987887901836,0,1.84083628503879,0,15.8630189707522,0,0,0,49.814919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| ||
|short_description=p1@LAMA2 | |short_description=p1@LAMA2 | ||
}} | }} |
Latest revision as of 16:04, 24 September 2015
Short description: | p1@LAMA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAMA2_5end |
Coexpression cluster: | C4556_Cardiac_heart_Adipocyte_Smooth_left_Fibroblast_skeletal |
Association with transcript: | 0bp_to_ENST00000354729, ENST00000358023, NM_000426, NM_001079823, uc003qbn.2, uc003qbo.2_5end |
EntrezGene: | LAMA2 |
HGNC: | 6482 |
UniProt: | F8WAH5A6NGS5P24043Q59H37 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.86e-16 | 76 |
muscle precursor cell | 1.78e-11 | 58 |
myoblast | 1.78e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.78e-11 | 58 |
muscle cell | 4.63e-10 | 55 |
fat cell | 4.88e-09 | 15 |
electrically responsive cell | 9.36e-09 | 61 |
electrically active cell | 9.36e-09 | 61 |
skin fibroblast | 6.79e-08 | 23 |