FFCP PHASE1:Hg19::chr3:129247479..129247493,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6010 | |EntrezGene=6010 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10012 | |HGNC=10012 | ||
|TSSclassifier=strong | |||
|UniProt=P08100 | |UniProt=P08100 | ||
|association_with_transcript=0bp_to_ENST00000296271,NM_000539,uc003emt.2_5end | |association_with_transcript=0bp_to_ENST00000296271,NM_000539,uc003emt.2_5end | ||
|cluster_id=chr3:129247479..129247493,+ | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_1_at_RHO_5end | |description=CAGE_peak_1_at_RHO_5end | ||
|id=chr3:129247479..129247493,+ | |id=chr3:129247479..129247493,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.00e-18;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!3.62e-34!2;UBERON:0002757!3.62e-34!2;UBERON:0010134!3.62e-34!2;UBERON:0002784!3.62e-34!2;UBERON:0005408!3.62e-34!2;UBERON:0001899!3.62e-34!2;UBERON:0007029!6.23e-18!1;UBERON:0002581!8.72e-18!1;UBERON:0003296!1.22e-17!4;UBERON:0010133!1.22e-17!4;UBERON:0002336!1.44e-17!1;UBERON:0001018!1.44e-17!1;UBERON:0002473!1.44e-17!1;UBERON:0005340!1.44e-17!1;UBERON:0002316!1.44e-17!1;UBERON:0003544!1.44e-17!1;UBERON:0001020!1.44e-17!1;UBERON:0005970!1.44e-17!1;UBERON:0002437!1.44e-17!1;UBERON:0007023!5.96e-11!115;UBERON:0001894!1.68e-10!7;UBERON:0006222!1.68e-10!7;UBERON:0001049!5.11e-10!57;UBERON:0005068!5.11e-10!57;UBERON:0006241!5.11e-10!57;UBERON:0007135!5.11e-10!57;UBERON:0002780!7.63e-10!41;UBERON:0001890!7.63e-10!41;UBERON:0006240!7.63e-10!41;UBERON:0003127!1.03e-09!2;UBERON:0002616!1.12e-09!59;UBERON:0003080!1.29e-09!42;UBERON:0002148!1.57e-09!2;UBERON:0009662!1.57e-09!2;UBERON:0005162!1.86e-09!2;UBERON:0000122!1.86e-09!2;UBERON:0001870!2.02e-09!2;UBERON:0003056!2.10e-09!61;UBERON:0003075!6.75e-09!86;UBERON:0007284!6.75e-09!86;UBERON:0005743!8.61e-09!86;UBERON:0002346!1.74e-08!90;UBERON:0000955!3.84e-08!69;UBERON:0006238!3.84e-08!69;UBERON:0000073!6.21e-08!94;UBERON:0001016!6.21e-08!94;UBERON:0001017!7.68e-07!82;UBERON:0000988!9.12e-07!3;UBERON:0006331!9.12e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;7.14e-26;2!UBERON:0002757;7.14e-26;2!UBERON:0010134;7.14e-26;2!UBERON:0005408;7.14e-26;2!UBERON:0001899;7.14e-26;2!UBERON:0003127;9.18e-26;2!UBERON:0003296;1.13e-13;4!UBERON:0010133;1.13e-13;4!UBERON:0002784;1.13e-13;4!UBERON:0000966;2.94e-11;5!UBERON:0005388;2.94e-11;5!UBERON:0001802;2.94e-11;5!UBERON:0000970;5.16e-11;20!UBERON:0002104;1.53e-10;21!UBERON:0000020;1.02e-09;23!UBERON:0001032;2.35e-09;24!UBERON:0004456;2.35e-09;24!UBERON:0001894;2.18e-08;7!UBERON:0003126;2.35e-08;7!UBERON:0001005;2.35e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,7.14e-26,2;UBERON:0002757,7.14e-26,2;UBERON:0010134,7.14e-26,2;UBERON:0005408,7.14e-26,2;UBERON:0001899,7.14e-26,2;UBERON:0003127,9.18e-26,2;UBERON:0003296,1.13e-13,4;UBERON:0010133,1.13e-13,4;UBERON:0002784,1.13e-13,4;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.32e-09,6;UBERON:0005388,1.32e-09,6;UBERON:0001802,1.32e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24;UBERON:0001894,2.18e-08,7;UBERON:0006222,2.18e-08,7;UBERON:0003126,2.35e-08,7;UBERON:0001005,2.35e-08,7 | |||
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|short_description=p1@RHO | |short_description=p1@RHO | ||
}} | }} |
Latest revision as of 17:22, 24 September 2015
Short description: | p1@RHO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RHO_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000296271, NM_000539, uc003emt.2_5end |
EntrezGene: | RHO |
HGNC: | 10012 |
UniProt: | P08100 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 7.14e-26 | 2 |
regional part of epithalamus | 7.14e-26 | 2 |
secretory circumventricular organ | 7.14e-26 | 2 |
circumventricular organ | 7.14e-26 | 2 |
epithalamus | 7.14e-26 | 2 |
open tracheal system trachea | 9.18e-26 | 2 |
gland of diencephalon | 1.13e-13 | 4 |
neuroendocrine gland | 1.13e-13 | 4 |
regional part of diencephalon | 1.13e-13 | 4 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
retina | 1.32e-09 | 6 |
photoreceptor array | 1.32e-09 | 6 |
posterior segment of eyeball | 1.32e-09 | 6 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |
diencephalon | 2.18e-08 | 7 |
future diencephalon | 2.18e-08 | 7 |
trachea | 2.35e-08 | 7 |
respiratory airway | 2.35e-08 | 7 |