FFCP PHASE1:Hg19::chr20:20693269..20693316,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:20693269..20693316,-
|short_description=p1@RALGAPA2
|description=CAGE_peak_1_at_RALGAPA2_5end
|association_with_transcript=-3bp_to_ENST00000202677,NM_0203...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57186 | |EntrezGene=57186 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16207 | |HGNC=16207 | ||
|TSSclassifier=strong | |||
|UniProt=Q2PPJ7 | |UniProt=Q2PPJ7 | ||
|association_with_transcript=-3bp_to_ENST00000202677,NM_020343,uc002wrz.2,uc010zsg.1_5end | |||
|cluster_id=chr20:20693269..20693316,- | |||
|coexpression_cluster_id=C612 | |||
|description=CAGE_peak_1_at_RALGAPA2_5end | |||
|id=chr20:20693269..20693316,- | |||
|ontology_enrichment_celltype=CL:0000037!1.09e-17!172;CL:0000566!1.09e-17!172;CL:0000738!2.10e-17!140;CL:0002032!7.06e-16!165;CL:0000837!7.06e-16!165;CL:0000988!2.06e-14!182;CL:0000763!1.39e-12!112;CL:0000049!1.39e-12!112;CL:0002087!4.96e-12!119;CL:0000766!4.96e-12!76;CL:0002031!9.57e-12!124;CL:0002057!6.60e-10!42;CL:0000557!6.95e-10!71;CL:0002009!3.96e-09!65;CL:0000860!9.74e-09!45;CL:0002194!2.36e-08!63;CL:0000576!2.36e-08!63;CL:0000040!2.36e-08!63;CL:0000559!2.36e-08!63;CL:0000839!5.34e-08!70 | |||
|ontology_enrichment_celltype_v019=CL:0000576;3.54e-07;48!CL:0000860;6.05e-07;33!CL:0002057;6.05e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.45e-18,168;CL:0000738,1.99e-18,136;CL:0002032,1.03e-16,161;CL:0000837,1.03e-16,161;CL:0000988,3.14e-15,177;CL:0000763,1.63e-13,108;CL:0000049,1.63e-13,108;CL:0000766,2.97e-13,72;CL:0002087,6.63e-13,115;CL:0002031,1.40e-12,120;CL:0000557,5.52e-11,67;CL:0002009,3.12e-10,61;CL:0000860,6.59e-10,42;CL:0002057,6.59e-10,42;CL:0000473,1.98e-09,48;CL:0000234,1.98e-09,48;CL:0002194,2.10e-09,59;CL:0000576,2.10e-09,59;CL:0000040,2.10e-09,59;CL:0000559,2.10e-09,59;CL:0000839,6.19e-09,66 | |||
|ontology_enrichment_development_v019=CL:0002057;1.98e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.06e-28!115;UBERON:0002193!2.16e-12!112;UBERON:0002405!2.23e-11!115;UBERON:0002390!3.94e-11!102;UBERON:0003061!3.94e-11!102;UBERON:0001049!1.87e-09!57;UBERON:0005068!1.87e-09!57;UBERON:0006241!1.87e-09!57;UBERON:0007135!1.87e-09!57;UBERON:0003080!1.15e-08!42;UBERON:0002780!3.11e-08!41;UBERON:0001890!3.11e-08!41;UBERON:0006240!3.11e-08!41;UBERON:0002616!3.82e-08!59;UBERON:0000955!1.60e-07!69;UBERON:0006238!1.60e-07!69;UBERON:0001017!1.94e-07!82;UBERON:0002371!2.74e-07!80;UBERON:0005743!4.23e-07!86;UBERON:0001474!8.23e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;3.31e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.12e-28,114;UBERON:0002193,2.53e-13,108;UBERON:0002390,4.72e-12,98;UBERON:0003061,4.72e-12,98;UBERON:0002405,1.19e-10,93;UBERON:0001049,4.80e-09,56;UBERON:0005068,4.80e-09,56;UBERON:0006241,4.80e-09,56;UBERON:0007135,4.80e-09,56;UBERON:0000073,9.60e-09,53;UBERON:0002616,9.60e-09,53;UBERON:0002780,3.11e-08,41;UBERON:0001890,3.11e-08,41;UBERON:0003080,3.11e-08,41;UBERON:0006240,3.11e-08,41;UBERON:0002371,4.48e-08,76;UBERON:0001474,1.62e-07,82;UBERON:0000955,3.58e-07,68;UBERON:0006238,3.58e-07,68;UBERON:0001017,4.13e-07,81 | |||
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| ||
|short_description=p1@RALGAPA2 | |||
}} | }} |
Latest revision as of 17:25, 24 September 2015
Short description: | p1@RALGAPA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RALGAPA2_5end |
Coexpression cluster: | C612_Neutrophils_Eosinophils_granulocyte_CD14_CD4_acute_CD19 |
Association with transcript: | -3bp_to_ENST00000202677, NM_020343, uc002wrz.2, uc010zsg.1_5end |
EntrezGene: | RALGAPA2 |
HGNC: | 16207 |
UniProt: | Q2PPJ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.45e-18 | 168 |
leukocyte | 1.99e-18 | 136 |
hematopoietic oligopotent progenitor cell | 1.03e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.03e-16 | 161 |
hematopoietic cell | 3.14e-15 | 177 |
myeloid cell | 1.63e-13 | 108 |
common myeloid progenitor | 1.63e-13 | 108 |
myeloid leukocyte | 2.97e-13 | 72 |
nongranular leukocyte | 6.63e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 1.40e-12 | 120 |
granulocyte monocyte progenitor cell | 5.52e-11 | 67 |
macrophage dendritic cell progenitor | 3.12e-10 | 61 |
classical monocyte | 6.59e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.59e-10 | 42 |
defensive cell | 1.98e-09 | 48 |
phagocyte | 1.98e-09 | 48 |
monopoietic cell | 2.10e-09 | 59 |
monocyte | 2.10e-09 | 59 |
monoblast | 2.10e-09 | 59 |
promonocyte | 2.10e-09 | 59 |
myeloid lineage restricted progenitor cell | 6.19e-09 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.12e-28 | 114 |
hemolymphoid system | 2.53e-13 | 108 |
hematopoietic system | 4.72e-12 | 98 |
blood island | 4.72e-12 | 98 |
immune system | 1.19e-10 | 93 |
neural tube | 4.80e-09 | 56 |
neural rod | 4.80e-09 | 56 |
future spinal cord | 4.80e-09 | 56 |
neural keel | 4.80e-09 | 56 |
regional part of nervous system | 9.60e-09 | 53 |
regional part of brain | 9.60e-09 | 53 |
regional part of forebrain | 3.11e-08 | 41 |
forebrain | 3.11e-08 | 41 |
anterior neural tube | 3.11e-08 | 41 |
future forebrain | 3.11e-08 | 41 |
bone marrow | 4.48e-08 | 76 |
bone element | 1.62e-07 | 82 |
brain | 3.58e-07 | 68 |
future brain | 3.58e-07 | 68 |
central nervous system | 4.13e-07 | 81 |