FFCP PHASE1:Hg19::chr11:104905579..104905599,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=834 | |EntrezGene=834 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1499 | |HGNC=1499 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-494bp_to_ENST00000528424_5end | |association_with_transcript=-494bp_to_ENST00000528424_5end | ||
|cluster_id=chr11:104905579..104905599,- | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_3_at_CASP1_5end | |description=CAGE_peak_3_at_CASP1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!9.15e-70!42;CL:0000860!4.38e-64!45;CL:0000766!1.64e-59!76;CL:0002194!1.05e-58!63;CL:0000576!1.05e-58!63;CL:0000040!1.05e-58!63;CL:0000559!1.05e-58!63;CL:0002009!2.13e-56!65;CL:0000839!3.36e-51!70;CL:0000557!3.00e-50!71;CL:0000763!6.09e-39!112;CL:0000049!6.09e-39!112;CL:0002087!1.57e-36!119;CL:0000738!2.05e-36!140;CL:0002031!4.67e-30!124;CL:0000037!4.60e-29!172;CL:0000566!4.60e-29!172;CL:0002032!1.45e-27!165;CL:0000837!1.45e-27!165;CL:0000988!2.43e-26!182;CL:0002393!8.47e-15!9;CL:0002397!8.47e-15!9;CL:0000094!3.54e-07!8 | |ontology_enrichment_celltype=CL:0002057!9.15e-70!42;CL:0000860!4.38e-64!45;CL:0000766!1.64e-59!76;CL:0002194!1.05e-58!63;CL:0000576!1.05e-58!63;CL:0000040!1.05e-58!63;CL:0000559!1.05e-58!63;CL:0002009!2.13e-56!65;CL:0000839!3.36e-51!70;CL:0000557!3.00e-50!71;CL:0000763!6.09e-39!112;CL:0000049!6.09e-39!112;CL:0002087!1.57e-36!119;CL:0000738!2.05e-36!140;CL:0002031!4.67e-30!124;CL:0000037!4.60e-29!172;CL:0000566!4.60e-29!172;CL:0002032!1.45e-27!165;CL:0000837!1.45e-27!165;CL:0000988!2.43e-26!182;CL:0002393!8.47e-15!9;CL:0002397!8.47e-15!9;CL:0000094!3.54e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.44e-94;33!CL:0002057;1.44e-94;33!CL:0000473;3.93e-69;39!CL:0000234;3.93e-69;39!CL:0000576;4.35e-68;48!CL:0000766;8.20e-41;69!CL:0002393;1.28e-20;6!CL:0002397;1.28e-20;6!CL:0000763;5.27e-18;100!CL:0002087;2.64e-16;104!CL:0000738;6.39e-12;136!CL:0000988;1.56e-07;177 | |ontology_enrichment_celltype_v019=CL:0000860;1.44e-94;33!CL:0002057;1.44e-94;33!CL:0000473;3.93e-69;39!CL:0000234;3.93e-69;39!CL:0000576;4.35e-68;48!CL:0000766;8.20e-41;69!CL:0002393;1.28e-20;6!CL:0002397;1.28e-20;6!CL:0000763;5.27e-18;100!CL:0002087;2.64e-16;104!CL:0000738;6.39e-12;136!CL:0000988;1.56e-07;177 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.88e-129,42;CL:0002057,2.88e-129,42;CL:0000473,6.53e-118,48;CL:0000234,6.53e-118,48;CL:0002194,1.96e-92,59;CL:0000576,1.96e-92,59;CL:0000040,1.96e-92,59;CL:0000559,1.96e-92,59;CL:0002009,3.79e-89,61;CL:0000766,2.42e-82,72;CL:0000839,8.72e-82,66;CL:0000557,1.92e-80,67;CL:0000763,6.41e-52,108;CL:0000049,6.41e-52,108;CL:0002087,5.31e-48,115;CL:0000738,1.50e-43,136;CL:0002031,4.90e-41,120;CL:0000037,2.11e-33,168;CL:0002032,1.00e-31,161;CL:0000837,1.00e-31,161;CL:0000988,3.32e-31,177;CL:0002393,4.63e-24,9;CL:0002397,4.63e-24,9;CL:0000134,1.18e-10,354;CL:0002320,2.95e-10,361;CL:0000219,7.33e-09,386;CL:0000048,3.64e-07,427;CL:0000723,6.23e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;7.34e-90;42!CL:0000049;5.67e-16;108 | |ontology_enrichment_development_v019=CL:0002057;7.34e-90;42!CL:0000049;5.67e-16;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.52e-52!102;UBERON:0003061!3.52e-52!102;UBERON:0002193!2.88e-47!112;UBERON:0002371!9.33e-43!80;UBERON:0001474!1.23e-38!86;UBERON:0002405!9.38e-34!115;UBERON:0004765!1.66e-30!101;UBERON:0001434!1.66e-30!101;UBERON:0003081!2.18e-18!216;UBERON:0002204!1.37e-14!167;UBERON:0007023!5.25e-13!115;UBERON:0000178!1.13e-07!15;UBERON:0000179!1.13e-07!15;UBERON:0000463!1.13e-07!15;UBERON:0001049!8.71e-07!57;UBERON:0005068!8.71e-07!57;UBERON:0006241!8.71e-07!57;UBERON:0007135!8.71e-07!57 | |ontology_enrichment_uberon=UBERON:0002390!3.52e-52!102;UBERON:0003061!3.52e-52!102;UBERON:0002193!2.88e-47!112;UBERON:0002371!9.33e-43!80;UBERON:0001474!1.23e-38!86;UBERON:0002405!9.38e-34!115;UBERON:0004765!1.66e-30!101;UBERON:0001434!1.66e-30!101;UBERON:0003081!2.18e-18!216;UBERON:0002204!1.37e-14!167;UBERON:0007023!5.25e-13!115;UBERON:0000178!1.13e-07!15;UBERON:0000179!1.13e-07!15;UBERON:0000463!1.13e-07!15;UBERON:0001049!8.71e-07!57;UBERON:0005068!8.71e-07!57;UBERON:0006241!8.71e-07!57;UBERON:0007135!8.71e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.56e-08;15!UBERON:0000179;7.56e-08;15!UBERON:0000463;7.56e-08;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;7.56e-08;15!UBERON:0000179;7.56e-08;15!UBERON:0000463;7.56e-08;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.62e-70,98;UBERON:0003061,1.62e-70,98;UBERON:0002371,6.26e-70,76;UBERON:0001474,3.46e-64,82;UBERON:0002193,4.09e-63,108;UBERON:0004765,1.05e-57,90;UBERON:0002405,1.46e-55,93;UBERON:0001434,4.75e-51,100;UBERON:0003081,1.49e-30,203;UBERON:0002204,6.82e-27,167;UBERON:0000926,4.32e-17,315;UBERON:0004120,4.32e-17,315;UBERON:0006603,4.32e-17,315;UBERON:0002384,1.02e-09,371;UBERON:0000178,9.22e-08,15;UBERON:0000179,9.22e-08,15;UBERON:0000463,9.22e-08,15 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0.786728553697808,1.15148819429164,0.619264493264304,0,0,0,0,0,0,1.66198622559563,1.60435557976113,1.51907609501096,0,0,0.257575567634187,1.45398238779565,0.377875943688809,0.970336244751265,3.48643555358527,6.98985409637104,6.81354015969228,7.19230980805376,5.89169625016932,8.27687804610048,6.89491361473237,12.2642089880927,16.251178391321,1.88242339542605,1.91034305040492,4.04502272001152,6.12167784741805,3.53021929783703,12.1474053901818,3.29851300186716,6.38283704389222,5.54092175692502,9.28669563611469,9.07816359505824,12.4564449799115,6.78371396193207,6.25779502104242,10.2078757011405,6.65939452896706,10.6800514436394,9.49387162322653,3.16882929467913,2.33864729961548,1.67726916406701,3.25753030324836,2.10247649978109,2.08943262706204,2.85012743741249,1.9891667719909,0.547992461293902,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0.324547393654683,0.522389211897802,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.07857100409308,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57602529119306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20088922641049,0,0,0,0,0,2.29391162142713,1.13929437434833,0.714695326373367,0,0.648473311192717,1.62009431171434,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684526894459965,0,0,0,0.837847203816763,0,2.15361907373044,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.129282956361551,0.39669780522807,0,0,0.533937062838473,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0,0.887432412294818,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0.413373593002368,0,0,0.548257766857182,0,0,0,0,0.336283722218824,0,0,0,0.230467975111559,0,0.135939465953663,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0.891139200981258,0,0,0.0939839179798536,0.386747327841463,0.399764623699716,0,0,0,0,0,1.57673541466596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620597975171371,0,0,0,0.248298857183432,0,0,0,0,0,0.0673520530145875,0.215166616178029,0.332660356546013,0,0,0,0,0,0,0,4.66029741929859,0.201273793591026,0.320568492303233 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0.786728553697808,1.15148819429164,0.619264493264304,0,0,0,0,0,0,1.66198622559563,1.60435557976113,1.51907609501096,0,0,0.257575567634187,1.45398238779565,0.377875943688809,0.970336244751265,3.48643555358527,6.98985409637104,6.81354015969228,7.19230980805376,5.89169625016932,8.27687804610048,6.89491361473237,12.2642089880927,16.251178391321,1.88242339542605,1.91034305040492,4.04502272001152,6.12167784741805,3.53021929783703,12.1474053901818,3.29851300186716,6.38283704389222,5.54092175692502,9.28669563611469,9.07816359505824,12.4564449799115,6.78371396193207,6.25779502104242,10.2078757011405,6.65939452896706,10.6800514436394,9.49387162322653,3.16882929467913,2.33864729961548,1.67726916406701,3.25753030324836,2.10247649978109,2.08943262706204,2.85012743741249,1.9891667719909,0.547992461293902,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0.324547393654683,0.522389211897802,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.07857100409308,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57602529119306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20088922641049,0,0,0,0,0,2.29391162142713,1.13929437434833,0.714695326373367,0,0.648473311192717,1.62009431171434,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684526894459965,0,0,0,0.837847203816763,0,2.15361907373044,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.129282956361551,0.39669780522807,0,0,0.533937062838473,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0,0.887432412294818,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0.413373593002368,0,0,0.548257766857182,0,0,0,0,0.336283722218824,0,0,0,0.230467975111559,0,0.135939465953663,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0.891139200981258,0,0,0.0939839179798536,0.386747327841463,0.399764623699716,0,0,0,0,0,1.57673541466596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620597975171371,0,0,0,0.248298857183432,0,0,0,0,0,0.0673520530145875,0.215166616178029,0.332660356546013,0,0,0,0,0,0,0,4.66029741929859,0.201273793591026,0.320568492303233 | ||
|short_description=p3@CASP1 | |short_description=p3@CASP1 | ||
}} | }} |
Latest revision as of 20:43, 24 September 2015
Short description: | p3@CASP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CASP1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -494bp_to_ENST00000528424_5end |
EntrezGene: | CASP1 |
HGNC: | 1499 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.88e-129 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.88e-129 | 42 |
defensive cell | 6.53e-118 | 48 |
phagocyte | 6.53e-118 | 48 |
monopoietic cell | 1.96e-92 | 59 |
monocyte | 1.96e-92 | 59 |
monoblast | 1.96e-92 | 59 |
promonocyte | 1.96e-92 | 59 |
macrophage dendritic cell progenitor | 3.79e-89 | 61 |
myeloid leukocyte | 2.42e-82 | 72 |
myeloid lineage restricted progenitor cell | 8.72e-82 | 66 |
granulocyte monocyte progenitor cell | 1.92e-80 | 67 |
myeloid cell | 6.41e-52 | 108 |
common myeloid progenitor | 6.41e-52 | 108 |
nongranular leukocyte | 5.31e-48 | 115 |
leukocyte | 1.50e-43 | 136 |
hematopoietic lineage restricted progenitor cell | 4.90e-41 | 120 |
hematopoietic stem cell | 2.11e-33 | 168 |
hematopoietic oligopotent progenitor cell | 1.00e-31 | 161 |
hematopoietic multipotent progenitor cell | 1.00e-31 | 161 |
hematopoietic cell | 3.32e-31 | 177 |
intermediate monocyte | 4.63e-24 | 9 |
CD14-positive, CD16-positive monocyte | 4.63e-24 | 9 |
mesenchymal cell | 1.18e-10 | 354 |
connective tissue cell | 2.95e-10 | 361 |
motile cell | 7.33e-09 | 386 |
multi fate stem cell | 3.64e-07 | 427 |
somatic stem cell | 6.23e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.62e-70 | 98 |
blood island | 1.62e-70 | 98 |
bone marrow | 6.26e-70 | 76 |
bone element | 3.46e-64 | 82 |
hemolymphoid system | 4.09e-63 | 108 |
skeletal element | 1.05e-57 | 90 |
immune system | 1.46e-55 | 93 |
skeletal system | 4.75e-51 | 100 |
lateral plate mesoderm | 1.49e-30 | 203 |
musculoskeletal system | 6.82e-27 | 167 |
mesoderm | 4.32e-17 | 315 |
mesoderm-derived structure | 4.32e-17 | 315 |
presumptive mesoderm | 4.32e-17 | 315 |
connective tissue | 1.02e-09 | 371 |
blood | 9.22e-08 | 15 |
haemolymphatic fluid | 9.22e-08 | 15 |
organism substance | 9.22e-08 | 15 |