FFCP PHASE1:Hg19::chrX:33146320..33146339,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1756 | |EntrezGene=1756 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2928 | |HGNC=2928 | ||
|TSSclassifier=strong | |||
|UniProt=E9PDN5 | |UniProt=E9PDN5 | ||
|association_with_transcript=137bp_to_ENST00000378677_5end | |association_with_transcript=137bp_to_ENST00000378677_5end | ||
|cluster_id=chrX:33146320..33146339,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_18_at_DMD_5end | |description=CAGE_peak_18_at_DMD_5end | ||
|id=chrX:33146320..33146339,- | |id=chrX:33146320..33146339,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.60e-10;2!UBERON:0003056;2.71e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;2.97e-19;1!DOID:4549;2.97e-19;1!DOID:5861;2.97e-19;1!DOID:6496;2.97e-19;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.71e-19,1;DOID:4549,2.71e-19,1;DOID:5861,2.71e-19,1;DOID:6496,2.71e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.62e-19!115;UBERON:0001905!8.78e-12!2;UBERON:0002757!8.78e-12!2;UBERON:0010134!8.78e-12!2;UBERON:0002784!8.78e-12!2;UBERON:0005408!8.78e-12!2;UBERON:0001899!8.78e-12!2;UBERON:0003127!1.20e-11!2;UBERON:0006947!6.68e-08!3;UBERON:0004054!6.68e-08!3;UBERON:0003135!2.30e-07!11;UBERON:0003126!4.46e-07!7;UBERON:0001005!4.46e-07!7;UBERON:0003075!7.41e-07!86;UBERON:0007284!7.41e-07!86 | |ontology_enrichment_uberon=UBERON:0007023!2.62e-19!115;UBERON:0001905!8.78e-12!2;UBERON:0002757!8.78e-12!2;UBERON:0010134!8.78e-12!2;UBERON:0002784!8.78e-12!2;UBERON:0005408!8.78e-12!2;UBERON:0001899!8.78e-12!2;UBERON:0003127!1.20e-11!2;UBERON:0006947!6.68e-08!3;UBERON:0004054!6.68e-08!3;UBERON:0003135!2.30e-07!11;UBERON:0003126!4.46e-07!7;UBERON:0001005!4.46e-07!7;UBERON:0003075!7.41e-07!86;UBERON:0007284!7.41e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.30e-37;2!UBERON:0002757;1.30e-37;2!UBERON:0010134;1.30e-37;2!UBERON:0005408;1.30e-37;2!UBERON:0001899;1.30e-37;2!UBERON:0003127;1.18e-36;2!UBERON:0006947;7.92e-25;3!UBERON:0004054;7.92e-25;3!UBERON:0003296;2.26e-19;4!UBERON:0010133;2.26e-19;4!UBERON:0002784;2.26e-19;4!UBERON:0001000;2.97e-19;1!UBERON:0001301;2.97e-19;1!UBERON:0005352;2.97e-19;1!UBERON:0005904;6.76e-19;4!UBERON:0001894;1.68e-11;7!UBERON:0003126;3.14e-11;7!UBERON:0001005;3.14e-11;7!UBERON:0000341;2.60e-10;2!UBERON:0000058;3.89e-08;10!UBERON:0003135;1.78e-07;11!UBERON:0002418;2.71e-07;3!UBERON:0004755;2.71e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.30e-37,2;UBERON:0002757,1.30e-37,2;UBERON:0010134,1.30e-37,2;UBERON:0005408,1.30e-37,2;UBERON:0001899,1.30e-37,2;UBERON:0003127,3.94e-37,2;UBERON:0006947,1.14e-24,3;UBERON:0004054,1.14e-24,3;UBERON:0003296,2.26e-19,4;UBERON:0010133,2.26e-19,4;UBERON:0002784,2.26e-19,4;UBERON:0001000,3.25e-19,1;UBERON:0005352,3.25e-19,1;UBERON:0001301,4.69e-19,1;UBERON:0005904,8.88e-19,4;UBERON:0001894,1.68e-11,7;UBERON:0006222,1.68e-11,7;UBERON:0003126,2.30e-11,7;UBERON:0001005,2.30e-11,7;UBERON:0000341,3.58e-10,2;UBERON:0007023,1.20e-09,114;UBERON:0003135,1.96e-07,11;UBERON:0002418,2.63e-07,3;UBERON:0004755,2.63e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46480320348181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552896299656123,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57833761139756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0,1.588610280447,5.42353777873278,0.137041924646751,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0,0,0,0,0.60896299190448,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,1.41696576325585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,18.74956425574,63.8939072215765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6439605160631,0.158013611732727,0.464965701472501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.151557396436479,0,0,0,1.27940389140589,0,0,0,0,0,0,0,0,0.0673520530145875,1.79305513481691,1.66330178273007,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46480320348181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552896299656123,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57833761139756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0,1.588610280447,5.42353777873278,0.137041924646751,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0,0,0,0,0.60896299190448,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,1.41696576325585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,18.74956425574,63.8939072215765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6439605160631,0.158013611732727,0.464965701472501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.151557396436479,0,0,0,1.27940389140589,0,0,0,0,0,0,0,0,0.0673520530145875,1.79305513481691,1.66330178273007,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p18@DMD | |short_description=p18@DMD | ||
}} | }} |
Latest revision as of 21:50, 24 September 2015
Short description: | p18@DMD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_DMD_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 137bp_to_ENST00000378677_5end |
EntrezGene: | DMD |
HGNC: | 2928 |
UniProt: | E9PDN5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.30e-37 | 2 |
regional part of epithalamus | 1.30e-37 | 2 |
secretory circumventricular organ | 1.30e-37 | 2 |
circumventricular organ | 1.30e-37 | 2 |
epithalamus | 1.30e-37 | 2 |
open tracheal system trachea | 3.94e-37 | 2 |
male genital duct | 1.14e-24 | 3 |
internal male genitalia | 1.14e-24 | 3 |
gland of diencephalon | 2.26e-19 | 4 |
neuroendocrine gland | 2.26e-19 | 4 |
regional part of diencephalon | 2.26e-19 | 4 |
vas deferens | 3.25e-19 | 1 |
spermatic cord | 3.25e-19 | 1 |
epididymis | 4.69e-19 | 1 |
duct of male reproductive system | 8.88e-19 | 4 |
diencephalon | 1.68e-11 | 7 |
future diencephalon | 1.68e-11 | 7 |
trachea | 2.30e-11 | 7 |
respiratory airway | 2.30e-11 | 7 |
throat | 3.58e-10 | 2 |
adult organism | 1.20e-09 | 114 |
male reproductive organ | 1.96e-07 | 11 |
cartilage tissue | 2.63e-07 | 3 |
skeletal tissue | 2.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.71e-19 | 1 |
extraosseous chondrosarcoma | 2.71e-19 | 1 |
myxoid chondrosarcoma | 2.71e-19 | 1 |
extraskeletal myxoid chondrosarcoma | 2.71e-19 | 1 |