FFCP PHASE1:Hg19::chr6:135271261..135271272,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64577 | |EntrezGene=64577 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15471 | |HGNC=15471 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H2A2,B7Z521 | |UniProt=Q9H2A2,B7Z521 | ||
|association_with_transcript=-1bp_to_ENST00000265605,NM_001193480,NM_022568,NM_170771_5end | |association_with_transcript=-1bp_to_ENST00000265605,NM_001193480,NM_022568,NM_170771_5end | ||
|cluster_id=chr6:135271261..135271272,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_3_at_ALDH8A1_5end | |description=CAGE_peak_3_at_ALDH8A1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000181!7.45e-26!12;CL:0000417!7.45e-26!12;CL:0000668!7.45e-26!12;CL:0000414!7.45e-26!12;CL:0000412!7.45e-26!12;CL:0000182!7.45e-26!12;CL:0000313!4.06e-10!1 | |ontology_enrichment_celltype=CL:0000181!7.45e-26!12;CL:0000417!7.45e-26!12;CL:0000668!7.45e-26!12;CL:0000414!7.45e-26!12;CL:0000412!7.45e-26!12;CL:0000182!7.45e-26!12;CL:0000313!4.06e-10!1 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.87e-19;12 | |ontology_enrichment_celltype_v019=CL:0000182;1.87e-19;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.87e-19,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.92e-10;11!UBERON:0009497;1.44e-08;13!UBERON:0003104;4.65e-08;31 | |ontology_enrichment_development_v019=UBERON:0004161;5.92e-10;11!UBERON:0009497;1.44e-08;13!UBERON:0003104;4.65e-08;31 | ||
|ontology_enrichment_disease=DOID:2152!4.06e-10!1;DOID:6193!6.91e-10!1;DOID:2355!8.99e-10!1 | |ontology_enrichment_disease=DOID:2152!4.06e-10!1;DOID:6193!6.91e-10!1;DOID:2355!8.99e-10!1 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0008835!6.47e-31!22;UBERON:0003894!6.47e-31!22;UBERON:0009854!1.61e-29!23;UBERON:0002107!1.35e-28!19;UBERON:0006925!1.35e-28!19;UBERON:0008836!1.35e-28!19;UBERON:0007499!4.61e-27!25;UBERON:0009497!4.61e-27!25;UBERON:0000015!4.61e-27!25;UBERON:0002423!4.61e-27!25;UBERON:0006235!4.61e-27!25;UBERON:0004161!4.61e-27!25;UBERON:0009856!5.64e-26!26;UBERON:0005057!1.21e-20!26;UBERON:0005172!1.50e-17!55;UBERON:0005173!1.50e-17!55;UBERON:0002365!3.74e-17!31;UBERON:0002330!3.74e-17!31;UBERON:0002417!1.19e-15!61;UBERON:0000916!1.19e-15!61;UBERON:0002368!4.44e-15!35;UBERON:0003929!7.45e-12!54;UBERON:0000949!1.68e-11!45;UBERON:0004911!4.06e-10!1;UBERON:0003112!7.55e-10!1;UBERON:0000032!7.55e-10!1;UBERON:0005253!7.55e-10!1;UBERON:0003128!7.55e-10!1;UBERON:0002241!7.55e-10!1;UBERON:0001703!7.55e-10!1;UBERON:0004761!7.55e-10!1;UBERON:0009617!7.55e-10!1;UBERON:0004913!8.24e-10!1;UBERON:0003703!8.24e-10!1;UBERON:0001174!8.24e-10!1;UBERON:0004914!8.24e-10!1;UBERON:0002530!1.59e-08!59;UBERON:0005177!3.70e-08!107;UBERON:0009569!1.25e-07!113;UBERON:0005911!2.30e-07!82 | |ontology_enrichment_uberon=UBERON:0008835!6.47e-31!22;UBERON:0003894!6.47e-31!22;UBERON:0009854!1.61e-29!23;UBERON:0002107!1.35e-28!19;UBERON:0006925!1.35e-28!19;UBERON:0008836!1.35e-28!19;UBERON:0007499!4.61e-27!25;UBERON:0009497!4.61e-27!25;UBERON:0000015!4.61e-27!25;UBERON:0002423!4.61e-27!25;UBERON:0006235!4.61e-27!25;UBERON:0004161!4.61e-27!25;UBERON:0009856!5.64e-26!26;UBERON:0005057!1.21e-20!26;UBERON:0005172!1.50e-17!55;UBERON:0005173!1.50e-17!55;UBERON:0002365!3.74e-17!31;UBERON:0002330!3.74e-17!31;UBERON:0002417!1.19e-15!61;UBERON:0000916!1.19e-15!61;UBERON:0002368!4.44e-15!35;UBERON:0003929!7.45e-12!54;UBERON:0000949!1.68e-11!45;UBERON:0004911!4.06e-10!1;UBERON:0003112!7.55e-10!1;UBERON:0000032!7.55e-10!1;UBERON:0005253!7.55e-10!1;UBERON:0003128!7.55e-10!1;UBERON:0002241!7.55e-10!1;UBERON:0001703!7.55e-10!1;UBERON:0004761!7.55e-10!1;UBERON:0009617!7.55e-10!1;UBERON:0004913!8.24e-10!1;UBERON:0003703!8.24e-10!1;UBERON:0001174!8.24e-10!1;UBERON:0004914!8.24e-10!1;UBERON:0002530!1.59e-08!59;UBERON:0005177!3.70e-08!107;UBERON:0009569!1.25e-07!113;UBERON:0005911!2.30e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;7.81e-33;19!UBERON:0006925;7.81e-33;19!UBERON:0002423;4.62e-25;25!UBERON:0002365;3.10e-20;31!UBERON:0002330;3.10e-20;31!UBERON:0002368;1.67e-17;33!UBERON:0005172;3.10e-13;52!UBERON:0005173;3.10e-13;52!UBERON:0000949;1.02e-12;43!UBERON:0002417;1.74e-08;58!UBERON:0000916;1.74e-08;58!UBERON:0002530;9.48e-07;57 | |ontology_enrichment_uberon_v019=UBERON:0002107;7.81e-33;19!UBERON:0006925;7.81e-33;19!UBERON:0002423;4.62e-25;25!UBERON:0002365;3.10e-20;31!UBERON:0002330;3.10e-20;31!UBERON:0002368;1.67e-17;33!UBERON:0005172;3.10e-13;52!UBERON:0005173;3.10e-13;52!UBERON:0000949;1.02e-12;43!UBERON:0002417;1.74e-08;58!UBERON:0000916;1.74e-08;58!UBERON:0002530;9.48e-07;57 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,8.07e-33,19;UBERON:0006925,8.07e-33,19;UBERON:0008836,8.07e-33,19;UBERON:0008835,2.08e-28,22;UBERON:0003894,2.08e-28,22;UBERON:0009854,3.42e-27,23;UBERON:0007499,4.73e-25,25;UBERON:0009497,4.73e-25,25;UBERON:0000015,4.73e-25,25;UBERON:0002423,4.73e-25,25;UBERON:0006235,4.73e-25,25;UBERON:0004161,4.73e-25,25;UBERON:0009856,4.19e-24,26;UBERON:0002365,2.80e-20,31;UBERON:0002330,2.80e-20,31;UBERON:0002368,5.29e-18,35;UBERON:0005172,1.21e-16,54;UBERON:0005173,1.21e-16,54;UBERON:0002417,5.37e-15,60;UBERON:0000916,5.37e-15,60;UBERON:0000949,4.50e-14,45;UBERON:0003929,9.00e-12,54;UBERON:0002530,8.54e-11,59;UBERON:0005177,6.05e-09,101;UBERON:0009569,4.56e-08,112;UBERON:0005911,8.06e-08,82;UBERON:0001041,2.23e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6755034821831,8.84544495009863,8.27105869353966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50339439602256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54188262097304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315132729228895,0.0824158583811665,0.0674035438541849,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,1.73372556058236,0.891727998294968,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,5.12932817873289,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447421727191169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6755034821831,8.84544495009863,8.27105869353966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50339439602256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54188262097304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315132729228895,0.0824158583811665,0.0674035438541849,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,1.73372556058236,0.891727998294968,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,5.12932817873289,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447421727191169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@ALDH8A1 | |short_description=p3@ALDH8A1 | ||
}} | }} |
Latest revision as of 22:44, 24 September 2015
Short description: | p3@ALDH8A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ALDH8A1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -1bp_to_ENST00000265605, NM_001193480, NM_022568, NM_170771_5end |
EntrezGene: | ALDH8A1 |
HGNC: | 15471 |
UniProt: | Q9H2A2B7Z521 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.87e-19 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 8.07e-33 | 19 |
digestive gland | 8.07e-33 | 19 |
liver bud | 8.07e-33 | 19 |
hepatic diverticulum | 2.08e-28 | 22 |
liver primordium | 2.08e-28 | 22 |
digestive tract diverticulum | 3.42e-27 | 23 |
epithelial sac | 4.73e-25 | 25 |
epithelium of foregut-midgut junction | 4.73e-25 | 25 |
anatomical boundary | 4.73e-25 | 25 |
hepatobiliary system | 4.73e-25 | 25 |
foregut-midgut junction | 4.73e-25 | 25 |
septum transversum | 4.73e-25 | 25 |
sac | 4.19e-24 | 26 |
exocrine gland | 2.80e-20 | 31 |
exocrine system | 2.80e-20 | 31 |
endocrine gland | 5.29e-18 | 35 |
abdomen element | 1.21e-16 | 54 |
abdominal segment element | 1.21e-16 | 54 |
abdominal segment of trunk | 5.37e-15 | 60 |
abdomen | 5.37e-15 | 60 |
endocrine system | 4.50e-14 | 45 |
gut epithelium | 9.00e-12 | 54 |
gland | 8.54e-11 | 59 |
trunk region element | 6.05e-09 | 101 |
subdivision of trunk | 4.56e-08 | 112 |
endo-epithelium | 8.06e-08 | 82 |
foregut | 2.23e-07 | 87 |