FFCP PHASE1:Hg19::chr14:64319669..64319739,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:64319669..64319739,+
|short_description=p1@SYNE2
|description=CAGE_peak_1_at_SYNE2_5end
|association_with_transcript=0bp_to_ENST00000341472,ENST0000034411...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23224 | |EntrezGene=23224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17084 | |HGNC=17084 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WXH0,Q6MZP0 | |UniProt=Q8WXH0,Q6MZP0 | ||
|association_with_transcript=0bp_to_ENST00000341472,ENST00000344113,ENST00000356081,ENST00000357395,ENST00000358025,NM_015180,NM_182914,uc001xgk.2,uc001xgl.2,uc001xgm.2_5end | |||
|cluster_id=chr14:64319669..64319739,+ | |||
|description=CAGE_peak_1_at_SYNE2_5end | |||
|id=chr14:64319669..64319739,+ | |||
|ontology_enrichment_celltype=CL:0000838!6.90e-13!52;CL:0000542!7.04e-13!53;CL:0000051!7.04e-13!53;CL:0000791!6.66e-12!18;CL:0000789!6.66e-12!18;CL:0002420!6.66e-12!18;CL:0002419!6.66e-12!18;CL:0000790!6.66e-12!18;CL:0000084!4.39e-10!25;CL:0000827!4.39e-10!25;CL:0000625!3.48e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.13e-12;18!CL:0000789;6.13e-12;18!CL:0002419;6.13e-12;18!CL:0000084;4.70e-10;25!CL:0000625;3.33e-08;11!CL:0000542;1.39e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,6.62e-13,52;CL:0000542,6.76e-13,53;CL:0000051,6.76e-13,53;CL:0000791,6.41e-12,18;CL:0000789,6.41e-12,18;CL:0002420,6.41e-12,18;CL:0002419,6.41e-12,18;CL:0000790,6.41e-12,18;CL:0000084,4.25e-10,25;CL:0000827,4.25e-10,25;CL:0000625,3.39e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;6.13e-12;18!CL:0000051;1.39e-07;53!UBERON:0006603;3.08e-07;65 | |||
|ontology_enrichment_disease=DOID:0050687!7.26e-12!143;DOID:305!7.61e-12!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,6.99e-12,143;DOID:305,7.33e-12,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.77e-11!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.76e-11,114 | |||
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| ||
|short_description=p1@SYNE2 | |||
}} | }} |
Latest revision as of 00:26, 25 September 2015
Short description: | p1@SYNE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYNE2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000341472, ENST00000344113, ENST00000356081, ENST00000357395, ENST00000358025, NM_015180, NM_182914, uc001xgk.2, uc001xgl.2, uc001xgm.2_5end |
EntrezGene: | SYNE2 |
HGNC: | 17084 |
UniProt: | Q8WXH0Q6MZP0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 6.62e-13 | 52 |
lymphocyte | 6.76e-13 | 53 |
common lymphoid progenitor | 6.76e-13 | 53 |
mature alpha-beta T cell | 6.41e-12 | 18 |
alpha-beta T cell | 6.41e-12 | 18 |
immature T cell | 6.41e-12 | 18 |
mature T cell | 6.41e-12 | 18 |
immature alpha-beta T cell | 6.41e-12 | 18 |
T cell | 4.25e-10 | 25 |
pro-T cell | 4.25e-10 | 25 |
CD8-positive, alpha-beta T cell | 3.39e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.76e-11 | 114 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 6.99e-12 | 143 |
carcinoma | 7.33e-12 | 106 |