FFCP PHASE1:Hg19::chr3:140770183..140770206,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=92369 | |EntrezGene=92369 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30630 | |HGNC=30630 | ||
|TSSclassifier=strong | |||
|UniProt=Q96A44 | |UniProt=Q96A44 | ||
|association_with_transcript=-37bp_to_ENST00000310546_5end | |association_with_transcript=-37bp_to_ENST00000310546_5end | ||
|cluster_id=chr3:140770183..140770206,+ | |||
|coexpression_cluster_id=C171 | |coexpression_cluster_id=C171 | ||
|description=CAGE_peak_1_at_SPSB4_5end | |description=CAGE_peak_1_at_SPSB4_5end | ||
|id=chr3:140770183..140770206,+ | |id=chr3:140770183..140770206,+ | ||
|ontology_enrichment_celltype=CL:0002319!2.58e-09!25;CL:0000540!4.06e-09!6;CL:0000031!4.06e-09!6;CL:0000404!4.06e-09!6;CL:0000047!7.05e-09!8;CL:0002322!1.22e-07!5;CL:0000133!4.55e-07!59 | |ontology_enrichment_celltype=CL:0002319!2.58e-09!25;CL:0000540!4.06e-09!6;CL:0000031!4.06e-09!6;CL:0000404!4.06e-09!6;CL:0000047!7.05e-09!8;CL:0002322!1.22e-07!5;CL:0000133!4.55e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000540;4.21e-20;6!CL:0000404;4.21e-20;6!CL:0002319;3.90e-13;25!CL:0000123;1.68e-11;2!CL:0000242;1.68e-11;2!CL:0000333;4.67e-09;5!CL:0002321;1.16e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.49e-21,8;CL:0000540,6.34e-20,6;CL:0000031,6.34e-20,6;CL:0000404,6.34e-20,6;CL:0002319,4.26e-13,25;CL:0000133,1.37e-12,59;CL:0000242,1.64e-11,2;CL:0000221,7.44e-10,72 | |||
|ontology_enrichment_development_v019=CL:0000031;4.21e-20;6!CL:0000133;1.03e-07;59 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;5.79e-13;22!DOID:2994;5.79e-13;22!DOID:169;1.28e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.85e-13,22;DOID:2994,2.85e-13,22;DOID:169,6.81e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001017!3.00e-23!82;UBERON:0000073!8.21e-23!94;UBERON:0001016!8.21e-23!94;UBERON:0005743!1.32e-22!86;UBERON:0001049!1.64e-18!57;UBERON:0005068!1.64e-18!57;UBERON:0006241!1.64e-18!57;UBERON:0007135!1.64e-18!57;UBERON:0003075!1.82e-15!86;UBERON:0007284!1.82e-15!86;UBERON:0000955!7.24e-15!69;UBERON:0006238!7.24e-15!69;UBERON:0002346!3.32e-14!90;UBERON:0002616!7.25e-14!59;UBERON:0002020!7.05e-13!34;UBERON:0003528!7.05e-13!34;UBERON:0007023!8.28e-13!115;UBERON:0004121!1.57e-12!169;UBERON:0001893!1.69e-12!34;UBERON:0002791!6.09e-12!33;UBERON:0000924!7.58e-12!173;UBERON:0006601!7.58e-12!173;UBERON:0002780!1.07e-11!41;UBERON:0001890!1.07e-11!41;UBERON:0006240!1.07e-11!41;UBERON:0003080!2.97e-11!42;UBERON:0001869!3.45e-11!32;UBERON:0000153!1.17e-09!129;UBERON:0007811!1.17e-09!129;UBERON:0003056!1.74e-09!61;UBERON:0003076!3.74e-09!15;UBERON:0003057!3.74e-09!15;UBERON:0000033!4.77e-09!123;UBERON:0002619!9.85e-08!22;UBERON:0000956!1.30e-07!25;UBERON:0000203!1.30e-07!25;UBERON:0002308!1.78e-07!9;UBERON:0000125!1.78e-07!9;UBERON:0002298!9.70e-07!8 | |ontology_enrichment_uberon=UBERON:0001017!3.00e-23!82;UBERON:0000073!8.21e-23!94;UBERON:0001016!8.21e-23!94;UBERON:0005743!1.32e-22!86;UBERON:0001049!1.64e-18!57;UBERON:0005068!1.64e-18!57;UBERON:0006241!1.64e-18!57;UBERON:0007135!1.64e-18!57;UBERON:0003075!1.82e-15!86;UBERON:0007284!1.82e-15!86;UBERON:0000955!7.24e-15!69;UBERON:0006238!7.24e-15!69;UBERON:0002346!3.32e-14!90;UBERON:0002616!7.25e-14!59;UBERON:0002020!7.05e-13!34;UBERON:0003528!7.05e-13!34;UBERON:0007023!8.28e-13!115;UBERON:0004121!1.57e-12!169;UBERON:0001893!1.69e-12!34;UBERON:0002791!6.09e-12!33;UBERON:0000924!7.58e-12!173;UBERON:0006601!7.58e-12!173;UBERON:0002780!1.07e-11!41;UBERON:0001890!1.07e-11!41;UBERON:0006240!1.07e-11!41;UBERON:0003080!2.97e-11!42;UBERON:0001869!3.45e-11!32;UBERON:0000153!1.17e-09!129;UBERON:0007811!1.17e-09!129;UBERON:0003056!1.74e-09!61;UBERON:0003076!3.74e-09!15;UBERON:0003057!3.74e-09!15;UBERON:0000033!4.77e-09!123;UBERON:0002619!9.85e-08!22;UBERON:0000956!1.30e-07!25;UBERON:0000203!1.30e-07!25;UBERON:0002308!1.78e-07!9;UBERON:0000125!1.78e-07!9;UBERON:0002298!9.70e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;3.50e-12;49!UBERON:0000013;4.67e-09;5!UBERON:0002410;4.67e-09;5!UBERON:0002114;3.20e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.18e-09,5;UBERON:0002410,2.18e-09,5;UBERON:0001016,4.04e-07,89;UBERON:0002114,4.69e-07,2 | |||
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|short_description=p1@SPSB4 | |short_description=p1@SPSB4 | ||
}} | }} |
Latest revision as of 02:41, 25 September 2015
Short description: | p1@SPSB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPSB4_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | -37bp_to_ENST00000310546_5end |
EntrezGene: | SPSB4 |
HGNC: | 30630 |
UniProt: | Q96A44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.49e-21 | 8 |
neuron | 6.34e-20 | 6 |
neuroblast | 6.34e-20 | 6 |
electrically signaling cell | 6.34e-20 | 6 |
neural cell | 4.26e-13 | 25 |
neurectodermal cell | 1.37e-12 | 59 |
Merkel cell | 1.64e-11 | 2 |
ectodermal cell | 7.44e-10 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.18e-09 | 5 |
autonomic nervous system | 2.18e-09 | 5 |
nervous system | 4.04e-07 | 89 |
duodenum | 4.69e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.85e-13 | 22 |
germ cell cancer | 2.85e-13 | 22 |
neuroendocrine tumor | 6.81e-08 | 6 |