FFCP PHASE1:Hg19::chr3:140770183..140770206,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:140770183..140770206,+
|short_description=p1@SPSB4
|description=CAGE_peak_1_at_SPSB4_5end
|association_with_transcript=-37bp_to_ENST00000310546_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=92369 | |EntrezGene=92369 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30630 | |HGNC=30630 | ||
|TSSclassifier=strong | |||
|UniProt=Q96A44 | |UniProt=Q96A44 | ||
|association_with_transcript=-37bp_to_ENST00000310546_5end | |||
|cluster_id=chr3:140770183..140770206,+ | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_1_at_SPSB4_5end | |||
|id=chr3:140770183..140770206,+ | |||
|ontology_enrichment_celltype=CL:0002319!2.58e-09!25;CL:0000540!4.06e-09!6;CL:0000031!4.06e-09!6;CL:0000404!4.06e-09!6;CL:0000047!7.05e-09!8;CL:0002322!1.22e-07!5;CL:0000133!4.55e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000540;4.21e-20;6!CL:0000404;4.21e-20;6!CL:0002319;3.90e-13;25!CL:0000123;1.68e-11;2!CL:0000242;1.68e-11;2!CL:0000333;4.67e-09;5!CL:0002321;1.16e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.49e-21,8;CL:0000540,6.34e-20,6;CL:0000031,6.34e-20,6;CL:0000404,6.34e-20,6;CL:0002319,4.26e-13,25;CL:0000133,1.37e-12,59;CL:0000242,1.64e-11,2;CL:0000221,7.44e-10,72 | |||
|ontology_enrichment_development_v019=CL:0000031;4.21e-20;6!CL:0000133;1.03e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;5.79e-13;22!DOID:2994;5.79e-13;22!DOID:169;1.28e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.85e-13,22;DOID:2994,2.85e-13,22;DOID:169,6.81e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001017!3.00e-23!82;UBERON:0000073!8.21e-23!94;UBERON:0001016!8.21e-23!94;UBERON:0005743!1.32e-22!86;UBERON:0001049!1.64e-18!57;UBERON:0005068!1.64e-18!57;UBERON:0006241!1.64e-18!57;UBERON:0007135!1.64e-18!57;UBERON:0003075!1.82e-15!86;UBERON:0007284!1.82e-15!86;UBERON:0000955!7.24e-15!69;UBERON:0006238!7.24e-15!69;UBERON:0002346!3.32e-14!90;UBERON:0002616!7.25e-14!59;UBERON:0002020!7.05e-13!34;UBERON:0003528!7.05e-13!34;UBERON:0007023!8.28e-13!115;UBERON:0004121!1.57e-12!169;UBERON:0001893!1.69e-12!34;UBERON:0002791!6.09e-12!33;UBERON:0000924!7.58e-12!173;UBERON:0006601!7.58e-12!173;UBERON:0002780!1.07e-11!41;UBERON:0001890!1.07e-11!41;UBERON:0006240!1.07e-11!41;UBERON:0003080!2.97e-11!42;UBERON:0001869!3.45e-11!32;UBERON:0000153!1.17e-09!129;UBERON:0007811!1.17e-09!129;UBERON:0003056!1.74e-09!61;UBERON:0003076!3.74e-09!15;UBERON:0003057!3.74e-09!15;UBERON:0000033!4.77e-09!123;UBERON:0002619!9.85e-08!22;UBERON:0000956!1.30e-07!25;UBERON:0000203!1.30e-07!25;UBERON:0002308!1.78e-07!9;UBERON:0000125!1.78e-07!9;UBERON:0002298!9.70e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;3.50e-12;49!UBERON:0000013;4.67e-09;5!UBERON:0002410;4.67e-09;5!UBERON:0002114;3.20e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.18e-09,5;UBERON:0002410,2.18e-09,5;UBERON:0001016,4.04e-07,89;UBERON:0002114,4.69e-07,2 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0.123121058076788,0,0.313454721478088,0.85870796139317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0.443458794925128,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975789649036763,0.927708378250397,1.51052125730374,0.932949495138334,1.7662459561294,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,1.26755034821831,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,0,1.54657762555539,1.17261385734044,2.55175500661265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.412164046590889,0.640986253728404,0.330037999682352,0,0,0,0.290012154876366,0.154048617114644,0,0,0,0,0.170453254832202,0.267096106940212,0,0,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.478278818186467,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0.99921590399346,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,1.03423011972439,0,1.04174996959975,0,0.241192877250816,0,0.110579259931225,0,0.438770794307945,0,0,0,0,0,0.269272933229316,1.52106320690811,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.652931232636591,0,0,0,0.176915129006678,0,1.18608451472249,2.47127877893006,1.8795950910982,0.337005664903385,2.40773294189637,0,0,0.19566461893209,0,0,0,1.22429104652196,0,0.150323419414493,0.207376382794494,0,0,0.313932918407225,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.677942222341597,0,0,0.126621591911757,0.195551382734803,0,0,0,0,0.114536596165916,0.171594997861965,0,0,0,0.271808412147228,0,0,0.288950589901519,1.20084057741958,0.273810757783986,0,0,0,0.837847203816763,0.229160424011684,0,0,0,0.223171457441873,0.53746777989381,0,2.32991899054908,0,0,0,0,0,0.795229689809303,0.136203406111576,2.25054407851027,1.10031549277787,0.83088067605837,0,0,0,0,0.157611414598396,0.629455057619977,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0.146552233678082,1.32506888912221,0.517131825446202,0.66116300871345,0,0,0,0,0.828478110694391,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0.500763722825999,0.573409195690071,0.443716206147409,0.496771223531068,0.415045904808692,0,0,0,0,7.96169339871699,15.3616290327475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0.779441235357554,0.531459361253452,0,0,0,0,0,0,0,0,0,0,0,1.91841556955478,1.72519698234691,0,1.41972529649618,0,0,0,0,0,0,0,0.352675943690684,0,0.256916900385838,0,0.319267718114302,0.205116364240755,0.504143392443436,0.276629009856872,0.161475645631851,0,0,0.235939446695481,0,0,0,0,0.795664888465099,0,0,8.59665412356402,0,0,0,0.135075169236789,0,0.206686796501184,0.0634158101939068,1.09394961803644,0,0,0,0,0,0,0,0.91064876540519,0,0,0,0.203909198930495,0.197318320688547,0,0,0.078493092850514,0.314231179832004,0,1.82631744101899,0,0,0,1.26410889386181,0,4.34645680756449,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.307988420568741,1.1598144313382,0.485710993059139,0.701818390386317,0,1.30812099855325,0.11294608203896,3.18827498561744,0.150962843566674,0,0.437119121007915,0,0,0,0.392616934229891,1.18818560130834,0.4226557275834,0,0.939839179798536,0.515663103788617,0,0,0.352894871715692,0,0,0,0.143339583151451,0.315543124386369,0,1.30905207102113,1.0580536810308,0,0.462175628631418,0,7.1914862155995,2.95017044301978,12.163056097098,1.52983244612973,0.534434810531121,0.459474497674225,0,0.151557396436479,0.267964130156178,0.829169439458779,0,0.213233981900981,0.23806443146374,0,0.0620747142958579,0,0,0.404234377916439,0,1.36893320434112,0.26940821205835,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 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| ||
|short_description=p1@SPSB4 | |||
}} | }} |
Latest revision as of 02:41, 25 September 2015
Short description: | p1@SPSB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPSB4_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | -37bp_to_ENST00000310546_5end |
EntrezGene: | SPSB4 |
HGNC: | 30630 |
UniProt: | Q96A44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.49e-21 | 8 |
neuron | 6.34e-20 | 6 |
neuroblast | 6.34e-20 | 6 |
electrically signaling cell | 6.34e-20 | 6 |
neural cell | 4.26e-13 | 25 |
neurectodermal cell | 1.37e-12 | 59 |
Merkel cell | 1.64e-11 | 2 |
ectodermal cell | 7.44e-10 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.18e-09 | 5 |
autonomic nervous system | 2.18e-09 | 5 |
nervous system | 4.04e-07 | 89 |
duodenum | 4.69e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.85e-13 | 22 |
germ cell cancer | 2.85e-13 | 22 |
neuroendocrine tumor | 6.81e-08 | 6 |