FFCP PHASE1:Hg19::chr19:11071652..11071682,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6597 | |EntrezGene=6597 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11100 | |HGNC=11100 | ||
|TSSclassifier=strong | |||
|UniProt=P51532 | |UniProt=P51532 | ||
|association_with_transcript=0bp_to_ENST00000344626_5end | |association_with_transcript=0bp_to_ENST00000344626_5end | ||
|cluster_id=chr19:11071652..11071682,+ | |||
|description=CAGE_peak_3_at_SMARCA4_5end | |description=CAGE_peak_3_at_SMARCA4_5end | ||
|id=chr19:11071652..11071682,+ | |id=chr19:11071652..11071682,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.08e-08!254;CL:0002321!1.90e-07!248;CL:0000333!2.38e-07!41;CL:0000220!5.44e-07!246 | |ontology_enrichment_celltype=CL:0000066!6.08e-08!254;CL:0002321!1.90e-07!248;CL:0000333!2.38e-07!41;CL:0000220!5.44e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:0002321;8.57e-07;15 | |ontology_enrichment_celltype_v019=CL:0002321;8.57e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.51e-08,253;CL:0000333,2.23e-07,41;CL:0002321,2.86e-07,250 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!5.32e-12!235;DOID:14566!2.77e-11!239;DOID:2531!1.84e-08!51;DOID:0060083!1.84e-08!51;DOID:1240!8.34e-08!39;DOID:0050686!1.36e-07!137 | |ontology_enrichment_disease=DOID:162!5.32e-12!235;DOID:14566!2.77e-11!239;DOID:2531!1.84e-08!51;DOID:0060083!1.84e-08!51;DOID:1240!8.34e-08!39;DOID:0050686!1.36e-07!137 | ||
|ontology_enrichment_disease_v019=DOID:1240;4.82e-07;39!DOID:8692;4.92e-07;31 | |ontology_enrichment_disease_v019=DOID:1240;4.82e-07;39!DOID:8692;4.92e-07;31 | ||
|ontology_enrichment_disease_v019_2=DOID:162,7.04e-12,235;DOID:14566,3.24e-11,239;DOID:2531,1.42e-08,51;DOID:0060083,1.42e-08,51;DOID:1240,6.37e-08,39;DOID:0050686,1.28e-07,137;DOID:8692,9.19e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0000119!2.49e-08!312;UBERON:0000924!3.01e-08!173;UBERON:0006601!3.01e-08!173;UBERON:0000483!4.96e-08!309;UBERON:0000064!5.61e-08!219;UBERON:0000073!6.44e-08!94;UBERON:0001016!6.44e-08!94;UBERON:0004121!8.72e-08!169;UBERON:0001017!6.75e-07!82;UBERON:0005743!8.98e-07!86 | |ontology_enrichment_uberon=UBERON:0000119!2.49e-08!312;UBERON:0000924!3.01e-08!173;UBERON:0006601!3.01e-08!173;UBERON:0000483!4.96e-08!309;UBERON:0000064!5.61e-08!219;UBERON:0000073!6.44e-08!94;UBERON:0001016!6.44e-08!94;UBERON:0004121!8.72e-08!169;UBERON:0001017!6.75e-07!82;UBERON:0005743!8.98e-07!86 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.82e-09,171;UBERON:0000924,3.82e-09,171;UBERON:0006601,3.82e-09,171;UBERON:0000119,1.03e-08,309;UBERON:0001016,1.67e-08,89;UBERON:0000483,2.09e-08,306;UBERON:0001017,2.54e-07,81;UBERON:0000955,8.61e-07,68;UBERON:0006238,8.61e-07,68;UBERON:0010371,9.44e-07,104 | |||
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| ||
|short_description=p3@SMARCA4 | |short_description=p3@SMARCA4 | ||
}} | }} |
Latest revision as of 03:56, 25 September 2015
Short description: | p3@SMARCA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMARCA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000344626_5end |
EntrezGene: | SMARCA4 |
HGNC: | 11100 |
UniProt: | P51532 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.51e-08 | 253 |
migratory neural crest cell | 2.23e-07 | 41 |
embryonic cell | 2.86e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.82e-09 | 171 |
ectoderm | 3.82e-09 | 171 |
presumptive ectoderm | 3.82e-09 | 171 |
cell layer | 1.03e-08 | 309 |
nervous system | 1.67e-08 | 89 |
epithelium | 2.09e-08 | 306 |
central nervous system | 2.54e-07 | 81 |
brain | 8.61e-07 | 68 |
future brain | 8.61e-07 | 68 |
ecto-epithelium | 9.44e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
cancer | 7.04e-12 | 235 |
disease of cellular proliferation | 3.24e-11 | 239 |
hematologic cancer | 1.42e-08 | 51 |
immune system cancer | 1.42e-08 | 51 |
leukemia | 6.37e-08 | 39 |
organ system cancer | 1.28e-07 | 137 |
myeloid leukemia | 9.19e-07 | 31 |