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A wide range of views for the FANTOM5 resources, including genes, TSS regions, motifs, samples, etc. | |||
=== Note === | |||
* we are focusing on phase1 freeze, and we are still keep updating this. | |||
* expression view on genes are little bit slow now. We are now investigating alternative ways. | |||
=== The data sources === | === The data sources === | ||
Revision as of 18:29, 29 February 2012
A wide range of views for the FANTOM5 resources, including genes, TSS regions, motifs, samples, etc.
Note
- we are focusing on phase1 freeze, and we are still keep updating this.
- expression view on genes are little bit slow now. We are now investigating alternative ways.
The data sources
- CAGE peaks (only the robust set), their association with genes, and their expression based on RLE TPM.
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/hg19/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/mm9/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
- Swissregulon motifs, and Motif Activity Response Analysis (MARA)
- FF Ontology
