FFCP PHASE1:Hg19::chr3:142608001..142608053,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:142608001..142608053,- to FFCP PHASE1:Hg19::chr3:142608001..142608053,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26577 | |EntrezGene=26577 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8739 | |HGNC=8739 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UKZ9 | |UniProt=Q9UKZ9 | ||
|association_with_transcript=0bp_to_ENST00000295992,NM_013363_5end | |||
|cluster_id=chr3:142608001..142608053,- | |||
|description=CAGE_peak_1_at_PCOLCE2_5end | |||
|id=chr3:142608001..142608053,- | |||
|ontology_enrichment_celltype=CL:0000055!1.00e-16!180;CL:0000136!2.84e-11!15;CL:0000325!3.06e-07!39;CL:0000359!4.50e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000136;2.47e-12;13!CL:0002334;1.33e-07;12!CL:0000359;9.36e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,6.47e-14,15;CL:0002334,1.17e-07,12;CL:0000359,5.30e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007100!3.87e-11!27;UBERON:0000948!1.72e-09!24;UBERON:0005498!1.72e-09!24;UBERON:0004140!1.72e-09!24;UBERON:0009881!1.72e-09!24;UBERON:0004141!1.72e-09!24;UBERON:0003084!1.72e-09!24;UBERON:0007005!1.72e-09!24;UBERON:0004139!1.72e-09!24;UBERON:0004291!1.72e-09!24;UBERON:0000475!3.68e-09!365;UBERON:0001013!2.59e-08!14;UBERON:0004872!3.93e-08!84;UBERON:0004573!1.02e-07!33;UBERON:0004571!1.02e-07!33;UBERON:0002385!2.13e-07!63;UBERON:0001015!2.13e-07!63;UBERON:0000383!2.13e-07!63;UBERON:0000468!3.19e-07!659;UBERON:0001134!5.15e-07!61;UBERON:0002036!5.15e-07!61;UBERON:0003082!5.15e-07!61;UBERON:0001637!9.48e-07!42;UBERON:0003509!9.48e-07!42;UBERON:0004572!9.48e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;8.26e-12;25!UBERON:0001013;3.57e-10;14!UBERON:0000948;9.49e-10;22!UBERON:0004573;9.72e-08;33!UBERON:0004571;9.72e-08;33!UBERON:0004457;2.30e-07;9!UBERON:0000042;2.30e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,7.32e-12,27;UBERON:0004872,3.19e-10,83;UBERON:0001013,3.76e-10,14;UBERON:0000948,7.64e-10,24;UBERON:0005498,7.64e-10,24;UBERON:0004140,7.64e-10,24;UBERON:0009881,7.64e-10,24;UBERON:0004141,7.64e-10,24;UBERON:0003084,7.64e-10,24;UBERON:0007005,7.64e-10,24;UBERON:0004139,7.64e-10,24;UBERON:0004291,7.64e-10,24;UBERON:0004573,5.93e-09,33;UBERON:0004571,5.93e-09,33;UBERON:0001637,3.95e-08,42;UBERON:0003509,3.95e-08,42;UBERON:0004572,3.95e-08,42;UBERON:0002100,5.92e-07,199;UBERON:0004457,6.51e-07,12;UBERON:0000042,6.51e-07,12;UBERON:0004797,9.01e-07,7 | |||
|phase1_expression=16.5327325136207,56.3084377833286,26.9222911823305,22.0161256376887,39.3325763096013,9.59572376510406,25.3299878168311,20.8467558230854,45.4462993067719,0,0,0,0,1.73272894144065,0.662794751455832,0.672325146451775,0.602694528023977,0,0.487932798790507,1.10808952269109,0.612002073732759,0.313454721478088,1.14494394852423,0.684372125364421,1.12988375635323,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0,1.11957737119962,0.647787332037959,0.257575567634187,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,1.34140171940727,1.53435074212236,22.4092274478431,15.0401373190767,17.5264287942597,67.5993054993434,80.7813884702376,0.945348171640679,1.77383517970051,1.05401742831751,2.75056058545197,0,0,0.649094787309367,0.522389211897802,1.06366368415092,0,0,0,0.39752481473341,2.58070378531837,0,0,0,0,1.25396979922086,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0,1.53316637465883,0,0,0,0,0,5.4666914686485,18.7413157263578,8.87141511448566,21.512746556161,9.57604631935564,2.80338800071154,5.33744978648525,1.48000529050296,2.8008993185979,0.538842688278752,0.653847612453835,0.302714855289863,0,0.468642863667593,0.312160076830321,0,1.34503812496621,0.352303495931295,0.485618833104395,0.140450806702248,0.61246251376468,0.122834317311768,0,0,0,0,0.718618141816238,0.505008341862199,1.7516592782075,0,0.438977620880838,0.612975591598039,0.600952235626387,0.794025282120147,1.4351170855109,0.427114777637135,1.69545520927649,14.1042815159669,2.26715564324566,6.95629458123199,11.353128236227,28.1856474842915,20.0720230632069,2.52433774244115,1.56484827691909,7.43571861366535,17.3954700333141,7.65715946530066,2.03472710772585,0,0,0,2.19552671033272,3.71083351300159,3.95059405756363,2.59152637538426,1.7662459561294,3.28479623168247,0,1.28648187638577,2.76269842704961,0.928735856063958,1.44375896333917,0.354920400119532,1.51726221070292,0.482022059766964,0.772057809126758,0.653638332277218,0.949082476444386,0.808987848960987,0.98110732562673,0.769494313892781,0,0,0,0,1.26755034821831,2.94848165003288,4.72631925345123,0,0,1.3725424823882,0.439001141634502,0,0.301586917234893,0.277765335475589,0,2.07986957055916,7.21656710126366,0.34779121492523,1.76113041353732,0.144366447761074,0,0,0,0,0,1.17002132569619,0.297262324577456,0,0.16798212819886,0,0.268675568108545,0.290633938513962,0,0,0,0.621984346622316,0.576479813667846,0.12624243342638,1.26995788584338,0,0,3.4214489204541,0.616964956219941,0,1.42913216315289,0.784917590417525,1.30788020649984,0.8800594298514,0.129271715757778,10.7296933755565,4.22651376278,0,0,0,0,0.532844358032199,0.142977993658148,0,0,5.5375151329935,0,0,4.82303003295338,6.10073421020206,1.3996218765488,0,0.502257091432126,0,6.70949595376431,0,2.85273810081437,49.2256442669769,9.04095819221687,2.32779252211864,0,0,0,0,4.31960861178188,0,0,1.34013012267479,0,0,0,0.414415513436035,0.36807447515742,0,0.271265023699736,0.415941723061614,0.178428988797162,0.473107245101804,0.702848489956279,0.601892199455438,2.27407504055985,2.0694614258501,1.99267679560631,0.737476674166813,0.260650843404249,0.391602314925481,0,0,0,0,0,0,0.604780586659361,6.4508030032882,12.7373437829092,8.98112302185835,6.91951405980785,6.14048698880044,2.57366273829772,11.8734453155993,2.62156479464514,15.0927466516158,7.2271897292152,2.59627214591811,8.13472649219715,0.120859449591622,0,0,1.95184561879831,2.00300284807389,3.01586154406675,0,0.231046011313244,0,1.46139224653261,0.844413031143006,0,0,0.215915916102139,0,0.270946437543853,0,0.509752546090077,0,0.223874754722178,0,0,0.256450125116389,0.656029291399411,0.325378394664303,15.1470287122152,6.3182930724657,9.98364949039115,0,0.650060246036521,17.6752322828576,0.48335359146061,1.23238893691716,2.45605879561807,0.413509717453592,0.537101224341368,1.45016693914229,1.02271952899321,0.0890320356467374,0,0,0.255225424989168,0.2023155617111,1.85938219718914,24.5553630527899,10.455559052409,334.832501651409,18.6307110610958,12.179061889051,2.59453906745488,4.57999637574372,1.48863347743867,0.632758849437452,0.190630193923825,0.511795582622668,0,5.09125196681499,7.8494864019923,0,0,0.353437207037059,22.6444379362114,28.5318578111415,4.21258456238981,0,31.4390401624357,7.39551027297288,0.272999822815972,0.707027159768564,41.8130031494898,2.75682671773062,15.9225354057893,14.9073300986279,0.578775534266688,0,0,3.717881977197,6.47899885824155,0.430234056612155,0.0982490410131212,0,2.12856638442359,78.3209326954334,16.1354497550352,0.379473173765715,0.699869440489966,0.0962221127255121,0,0,12.2386941009813,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,1.06824071127473,0,1.47024129588619,0,1.44269212976445,0,1.4348364545594,0,0,0,0.649243880549111,0,0,0.156679895773023,0,0,0,0,0.851692475380653,0,0.921722292925374,0.447352215784832,0.500547425135725,1.17232857241224,0,0,0.270455678475983,0,0,0,28.862111316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| ||
|short_description=p1@PCOLCE2 | |||
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Latest revision as of 05:02, 25 September 2015
Short description: | p1@PCOLCE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCOLCE2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000295992, NM_013363_5end |
EntrezGene: | PCOLCE2 |
HGNC: | 8739 |
UniProt: | Q9UKZ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 6.47e-14 | 15 |
preadipocyte | 1.17e-07 | 12 |
vascular associated smooth muscle cell | 5.30e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 7.32e-12 | 27 |
splanchnic layer of lateral plate mesoderm | 3.19e-10 | 83 |
adipose tissue | 3.76e-10 | 14 |
heart | 7.64e-10 | 24 |
primitive heart tube | 7.64e-10 | 24 |
primary heart field | 7.64e-10 | 24 |
anterior lateral plate mesoderm | 7.64e-10 | 24 |
heart tube | 7.64e-10 | 24 |
heart primordium | 7.64e-10 | 24 |
cardiac mesoderm | 7.64e-10 | 24 |
cardiogenic plate | 7.64e-10 | 24 |
heart rudiment | 7.64e-10 | 24 |
systemic artery | 5.93e-09 | 33 |
systemic arterial system | 5.93e-09 | 33 |
artery | 3.95e-08 | 42 |
arterial blood vessel | 3.95e-08 | 42 |
arterial system | 3.95e-08 | 42 |
trunk | 5.92e-07 | 199 |
cavity lining | 6.51e-07 | 12 |
serous membrane | 6.51e-07 | 12 |
blood vessel layer | 9.01e-07 | 7 |