FFCP PHASE1:Hg19::chr2:231789941..231789975,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:231789941..231789975,- to FFCP PHASE1:Hg19::chr2:231789941..231789975,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9290 | |EntrezGene=9290 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4511 | |HGNC=4511 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y2T6,C9J1P7,A8K858 | |UniProt=Q9Y2T6,C9J1P7,A8K858 | ||
|association_with_transcript=0bp_to_ENST00000392040,ENST00000438398,ENST00000444078,NM_005683,uc002vrf.2,uc002vrg.2_5end | |||
|cluster_id=chr2:231789941..231789975,- | |||
|coexpression_cluster_id=C3491 | |||
|description=CAGE_peak_1_at_GPR55_5end | |||
|id=chr2:231789941..231789975,- | |||
|ontology_enrichment_celltype=CL:0000738!1.68e-39!140;CL:0000037!1.02e-38!172;CL:0000566!1.02e-38!172;CL:0000988!2.06e-38!182;CL:0002032!7.22e-36!165;CL:0000837!7.22e-36!165;CL:0002087!7.77e-35!119;CL:0000542!7.07e-34!53;CL:0000051!7.07e-34!53;CL:0000838!4.14e-33!52;CL:0002031!1.17e-31!124;CL:0000791!8.35e-21!18;CL:0000789!8.35e-21!18;CL:0002420!8.35e-21!18;CL:0002419!8.35e-21!18;CL:0000790!8.35e-21!18;CL:0000084!1.46e-18!25;CL:0000827!1.46e-18!25;CL:0000625!1.20e-13!11;CL:0000945!2.11e-13!24;CL:0000826!2.11e-13!24;CL:0000451!9.04e-13!10;CL:0000990!2.68e-11!8;CL:0000763!1.13e-09!112;CL:0000049!1.13e-09!112;CL:0000453!2.97e-08!5;CL:0000236!1.19e-07!14;CL:0000624!1.36e-07!6;CL:0000840!2.79e-07!5;CL:0001029!2.79e-07!5;CL:0002393!2.82e-07!9;CL:0002397!2.82e-07!9;CL:0002009!3.86e-07!65;CL:0000080!6.58e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.12e-29;18!CL:0000789;2.12e-29;18!CL:0002419;2.12e-29;18!CL:0000084;1.14e-25;25!CL:0000625;8.87e-20;11!CL:0000542;5.10e-19;53!CL:0000945;7.04e-14;24!CL:0000453;1.06e-13;5!CL:0000990;5.78e-10;8!CL:0000624;3.37e-09;6!CL:0000451;5.46e-08;10!CL:0000898;1.30e-07;3!CL:0000236;2.21e-07;13!CL:0002087;4.86e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.25e-35,52;CL:0000542,1.56e-34,53;CL:0000051,1.56e-34,53;CL:0000791,1.81e-29,18;CL:0000789,1.81e-29,18;CL:0002420,1.81e-29,18;CL:0002419,1.81e-29,18;CL:0000790,1.81e-29,18;CL:0000084,7.76e-26,25;CL:0000827,7.76e-26,25;CL:0000738,1.36e-21,136;CL:0000988,1.06e-20,177;CL:0000037,2.65e-20,168;CL:0002087,7.13e-20,115;CL:0000625,8.74e-20,11;CL:0002032,1.44e-19,161;CL:0000837,1.44e-19,161;CL:0002031,5.98e-19,120;CL:0000945,4.95e-14,24;CL:0000826,4.95e-14,24;CL:0000453,1.05e-13,5;CL:0000990,5.24e-10,8;CL:0000624,2.79e-09,6;CL:0000236,3.71e-09,14;CL:0000451,5.04e-08,10;CL:0000898,1.07e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.12e-29;18!CL:0000051;5.10e-19;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.83e-15!102;UBERON:0003061!2.83e-15!102;UBERON:0002193!1.88e-14!112;UBERON:0000178!8.47e-12!15;UBERON:0000179!8.47e-12!15;UBERON:0000463!8.47e-12!15;UBERON:0004177!2.40e-09!7;UBERON:0007023!1.86e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.66e-15;15!UBERON:0000179;1.66e-15;15!UBERON:0000463;1.66e-15;15!UBERON:0002390;7.65e-13;32!UBERON:0004177;9.12e-12;5!UBERON:0005057;9.12e-12;5!UBERON:0002193;2.22e-08;42!UBERON:0002106;8.42e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.10e-15,7;UBERON:0005057,1.10e-15,7;UBERON:0000178,1.98e-15,15;UBERON:0000179,1.98e-15,15;UBERON:0000463,1.98e-15,15;UBERON:0002370,1.38e-09,4;UBERON:0005058,1.38e-09,4;UBERON:0009113,1.38e-09,4;UBERON:0003295,1.38e-09,4;UBERON:0005562,1.38e-09,4;UBERON:0002193,6.09e-09,108;UBERON:0002390,1.40e-08,98;UBERON:0003061,1.40e-08,98;UBERON:0002106,8.85e-08,3;UBERON:0004854,8.85e-08,3;UBERON:0009034,8.85e-08,3;UBERON:0002095,8.85e-08,3;UBERON:0004782,8.85e-08,3;UBERON:0003281,8.85e-08,3;UBERON:0009664,8.85e-08,3;UBERON:0002296,8.85e-08,3;UBERON:0005602,8.85e-08,3;UBERON:0001179,8.85e-08,3;UBERON:0006293,8.85e-08,3 | |||
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| ||
|short_description=p1@GPR55 | |||
}} | }} |
Latest revision as of 06:55, 25 September 2015
Short description: | p1@GPR55 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPR55_5end |
Coexpression cluster: | C3491_migratory_CD4_splenic_immature_xeroderma_b_lymphangiectasia |
Association with transcript: | 0bp_to_ENST00000392040, ENST00000438398, ENST00000444078, NM_005683, uc002vrf.2, uc002vrg.2_5end |
EntrezGene: | GPR55 |
HGNC: | 4511 |
UniProt: | Q9Y2T6C9J1P7A8K858 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.25e-35 | 52 |
lymphocyte | 1.56e-34 | 53 |
common lymphoid progenitor | 1.56e-34 | 53 |
mature alpha-beta T cell | 1.81e-29 | 18 |
alpha-beta T cell | 1.81e-29 | 18 |
immature T cell | 1.81e-29 | 18 |
mature T cell | 1.81e-29 | 18 |
immature alpha-beta T cell | 1.81e-29 | 18 |
T cell | 7.76e-26 | 25 |
pro-T cell | 7.76e-26 | 25 |
leukocyte | 1.36e-21 | 136 |
hematopoietic cell | 1.06e-20 | 177 |
hematopoietic stem cell | 2.65e-20 | 168 |
nongranular leukocyte | 7.13e-20 | 115 |
CD8-positive, alpha-beta T cell | 8.74e-20 | 11 |
hematopoietic oligopotent progenitor cell | 1.44e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.44e-19 | 161 |
hematopoietic lineage restricted progenitor cell | 5.98e-19 | 120 |
lymphocyte of B lineage | 4.95e-14 | 24 |
pro-B cell | 4.95e-14 | 24 |
Langerhans cell | 1.05e-13 | 5 |
conventional dendritic cell | 5.24e-10 | 8 |
CD4-positive, alpha-beta T cell | 2.79e-09 | 6 |
B cell | 3.71e-09 | 14 |
dendritic cell | 5.04e-08 | 10 |
naive T cell | 1.07e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 1.10e-15 | 7 |
immune organ | 1.10e-15 | 7 |
blood | 1.98e-15 | 15 |
haemolymphatic fluid | 1.98e-15 | 15 |
organism substance | 1.98e-15 | 15 |
thymus | 1.38e-09 | 4 |
hemolymphoid system gland | 1.38e-09 | 4 |
thymic region | 1.38e-09 | 4 |
pharyngeal gland | 1.38e-09 | 4 |
thymus primordium | 1.38e-09 | 4 |
hemolymphoid system | 6.09e-09 | 108 |
hematopoietic system | 1.40e-08 | 98 |
blood island | 1.40e-08 | 98 |
spleen | 8.85e-08 | 3 |
gastrointestinal system mesentery | 8.85e-08 | 3 |
stomach region | 8.85e-08 | 3 |
mesentery | 8.85e-08 | 3 |
gastrointestinal system serosa | 8.85e-08 | 3 |
mesentery of stomach | 8.85e-08 | 3 |
gut mesentery | 8.85e-08 | 3 |
dorsal mesentery | 8.85e-08 | 3 |
dorsal mesogastrium | 8.85e-08 | 3 |
peritoneal cavity | 8.85e-08 | 3 |
spleen primordium | 8.85e-08 | 3 |