FFCP PHASE1:Mm9::chr11:87912705..87912756,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=103841 | |EntrezGene=103841 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-35bp_to_ENSMUST00000133149_5end | |association_with_transcript=-35bp_to_ENSMUST00000133149_5end | ||
|cluster_id=chr11:87912705..87912756,+ | |||
|description=CAGE_peak_1_at_Cuedc1_5end | |description=CAGE_peak_1_at_Cuedc1_5end | ||
|id=chr11:87912705..87912756,+ | |id=chr11:87912705..87912756,+ | ||
|ontology_enrichment_celltype=CL:0000393!4.09e-11!39;CL:0000211!4.09e-11!39;CL:0000540!6.35e-11!33;CL:0000047!6.35e-11!33;CL:0000031!6.35e-11!33;CL:0000404!6.35e-11!33;CL:0002319!3.32e-10!43;CL:0000221!3.77e-10!44;CL:0000133!3.77e-10!44;CL:0000055!4.55e-10!50;CL:0000117!1.63e-08!23;CL:0000337!1.63e-08!23 | |ontology_enrichment_celltype=CL:0000393!4.09e-11!39;CL:0000211!4.09e-11!39;CL:0000540!6.35e-11!33;CL:0000047!6.35e-11!33;CL:0000031!6.35e-11!33;CL:0000404!6.35e-11!33;CL:0002319!3.32e-10!43;CL:0000221!3.77e-10!44;CL:0000133!3.77e-10!44;CL:0000055!4.55e-10!50;CL:0000117!1.63e-08!23;CL:0000337!1.63e-08!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.00e-11,39;CL:0000211,4.00e-11,39;CL:0000540,6.22e-11,33;CL:0000047,6.22e-11,33;CL:0000031,6.22e-11,33;CL:0000404,6.22e-11,33;CL:0002319,3.26e-10,43;CL:0000221,3.70e-10,44;CL:0000133,3.70e-10,44;CL:0000117,1.61e-08,23;CL:0000337,1.61e-08,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!7.15e-19!102;UBERON:0000924!7.15e-19!102;UBERON:0006601!7.15e-19!102;UBERON:0001017!4.68e-17!73;UBERON:0005743!4.68e-17!73;UBERON:0000073!5.13e-16!75;UBERON:0001016!5.13e-16!75;UBERON:0002346!3.27e-15!71;UBERON:0003075!3.27e-15!71;UBERON:0007284!3.27e-15!71;UBERON:0000033!8.27e-14!63;UBERON:0001049!6.84e-13!52;UBERON:0005068!6.84e-13!52;UBERON:0006241!6.84e-13!52;UBERON:0007135!6.84e-13!52;UBERON:0003056!1.77e-11!49;UBERON:0004111!1.04e-10!122;UBERON:0000955!1.44e-10!50;UBERON:0006238!1.44e-10!50;UBERON:0002616!1.94e-10!49;UBERON:0003080!3.09e-09!40;UBERON:0002780!3.68e-09!39;UBERON:0001890!3.68e-09!39;UBERON:0006240!3.68e-09!39;UBERON:0000468!2.09e-08!333;UBERON:0000025!2.48e-08!114;UBERON:0002020!5.16e-08!34 | |ontology_enrichment_uberon=UBERON:0004121!7.15e-19!102;UBERON:0000924!7.15e-19!102;UBERON:0006601!7.15e-19!102;UBERON:0001017!4.68e-17!73;UBERON:0005743!4.68e-17!73;UBERON:0000073!5.13e-16!75;UBERON:0001016!5.13e-16!75;UBERON:0002346!3.27e-15!71;UBERON:0003075!3.27e-15!71;UBERON:0007284!3.27e-15!71;UBERON:0000033!8.27e-14!63;UBERON:0001049!6.84e-13!52;UBERON:0005068!6.84e-13!52;UBERON:0006241!6.84e-13!52;UBERON:0007135!6.84e-13!52;UBERON:0003056!1.77e-11!49;UBERON:0004111!1.04e-10!122;UBERON:0000955!1.44e-10!50;UBERON:0006238!1.44e-10!50;UBERON:0002616!1.94e-10!49;UBERON:0003080!3.09e-09!40;UBERON:0002780!3.68e-09!39;UBERON:0001890!3.68e-09!39;UBERON:0006240!3.68e-09!39;UBERON:0000468!2.09e-08!333;UBERON:0000025!2.48e-08!114;UBERON:0002020!5.16e-08!34 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.87e-19,92;UBERON:0004121,4.34e-19,95;UBERON:0000924,4.34e-19,95;UBERON:0006601,4.34e-19,95;UBERON:0001017,4.52e-17,73;UBERON:0001016,4.97e-16,75;UBERON:0002346,1.01e-15,64;UBERON:0003075,1.01e-15,64;UBERON:0007284,1.01e-15,64;UBERON:0010371,2.55e-15,73;UBERON:0001049,6.67e-13,52;UBERON:0005068,6.67e-13,52;UBERON:0006241,6.67e-13,52;UBERON:0007135,6.67e-13,52;UBERON:0000073,3.77e-12,54;UBERON:0003056,1.74e-11,49;UBERON:0000955,5.06e-11,47;UBERON:0006238,5.06e-11,47;UBERON:0002616,6.72e-11,46;UBERON:0004111,1.12e-10,122;UBERON:0003080,3.04e-09,40;UBERON:0002780,3.61e-09,39;UBERON:0001890,3.61e-09,39;UBERON:0006240,3.61e-09,39;UBERON:0000025,2.68e-08,114;UBERON:0002020,5.09e-08,34 | |||
|phase1_expression=10.089377367602,0.348975407639361,1.36499771816861,1.20985684522732,0.500895729946347,1.17515490338323,0.233612640595526,0.645616617207881,0.84473233291,0.234064526321993,2.22583358693156,1.43589886191606,0.342401459862411,0.437102012094987,0,0.607425802169478,0.699561878128147,1.89277299214943,1.7824876368746,2.54633791078818,6.88850650223665,2.08510997521859,2.61199789138935,0.95995453676044,0.45881856213434,1.14846392823004,0.86152399231815,0,0.380046838912748,0.756090389279792,0.886922042621219,1.27006134691926,0.61506478758457,0,1.73310971850765,2.1610503896604,2.6542016314108,0,0,0,0,0,0,9.69405498411945,10.3404469843905,7.89251034295231,14.8654355426127,6.75877984779384,19.7717564461025,12.6379434398284,7.13930750289349,11.5002051491977,1.17447824240415,0.725362142011344,4.7053131879945,9.51859913333004,12.6074713573053,15.9858348606007,28.5266209812033,22.7466121086974,20.2826049121977,12.5372476865579,2.66788438833342,2.2497492932035,0.988866362566974,2.1314403448383,8.68840320503374,11.5265491596466,21.7748185847803,17.6857779214515,18.9292465216244,13.9968982357864,10.1599528837742,17.6386750869534,16.2937300731002,14.7075005857603,8.8092704799511,8.55505165170758,8.90917892886212,38.774568592677,31.7462123300361,26.5665818983948,7.81712397203867,14.069065250792,8.86229837105499,16.4992007865254,13.3829379951157,22.7407323906867,4.08921443999194,4.23200736597999,13.9134954576805,3.44169550792555,0,0,0.649776417447669,0.896053774194671,6.46044332606059,7.15807354827843,7.01422212427746,7.0667914902068,9.43650912503759,11.5493829672886,7.64415719119937,14.2213340630666,6.27824018932521,5.06719730950197,5.56076889516262,3.53970027129086,1.29468941823586,17.9614988268438,7.80683970447611,8.52503339273995,6.91846491768175,6.63179618431539,10.1126288136706,11.0586600370114,6.42706916109372,12.8693427658721,6.19227386364912,18.2796540440572,8.83366073841574,7.75800405016355,5.59175283654366,18.4451902117275,20.7352239745321,3.57639877292028,1.43778149407104,1.79970819298022,1.90605340609597,10.7849260371472,12.8100168789215,21.1099311549612,8.34356736922927,8.18289463457058,13.9217989854905,8.59878694259116,15.785101396799,9.45492976636707,9.09801930361229,16.414464759145,9.10843100738926,7.12696523743766,11.5239763075424,15.3718914192429,16.805015290378,13.0675994690547,14.0552586839593,23.5420067372504,8.83828771024653,12.2918952109083,15.3077478022636,10.7405908889512,13.6243152120543,12.1888258282758,9.67176041117334,7.56330213910274,0.702213187313235,0,0.284163499395593,7.87077935634907,7.03578179943289,5.04173772090842,11.3637473080901,9.05115466038058,9.87309522479221,10.4640275137684,12.6088498657821,12.37712629092,13.8230273927324,14.4467368389604,21.2400281010142,18.5673984030172,17.344459107993,27.2439030083555,10.9350773253346,23.4622516224768,7.59963200862735,1.58670339998127,9.38468302355029,11.147360249301,6.70110798874885,5.84882221407693,4.22518283305254,3.99473814836374,3.32170343081158,4.11747386810027,5.27803938480566,6.56556357735798,5.06906626509712,3.59527763461689,2.59365659849633,6.37252074413975,8.15571974098251,6.85491075658373,7.88954149711563,8.14605311381257,8.14600446104028,15.9909669349926,12.0781785907331,8.85660887877613,7.06494275286187,8.26760998276064,1.48226313543574,1.50160595144485,2.55526693647164,1.12431056192427,0.608580364165509,1.68824011826692,1.2731292589071,3.16465751195892,1.94562272130042,1.09824565275233,5.75072826109418,2.60498663367952,2.80833905803104,3.78868316920668,0.717589654087649,1.4473305640901,11.4546977903295,9.09558776498327,8.63714375142737,6.62005834523234,6.57132695207806,6.70025029767263,9.04565835366852,14.8301572371927,14.817703545982,14.8381342064679,18.4967531642685,16.3863314715738,13.6421135674058,14.7542039753142,0,0,4.91764273019036,7.45029215022778,13.0045977890111,13.9481907044722,5.73772308818364,18.6828486131236,9.14973836307144,12.1036010731958,12.7099804662351,11.9484398976276,14.2591151412732,12.7384438854975,16.5972387686707,15.7818163272108,19.3691011193797,11.2462460747632,10.0777460497871,11.7523298420388,13.3567306669932,11.3829384851049,13.2745138339963,8.74010290157933,9.06970670894253,5.09233715340925,7.97315110778086,8.60818414242997,14.2135561242522,11.2695456138027,10.3384239731569,7.9009189483954,8.4334886859999,10.3135543248187,16.3411010761818,9.00305470156551,15.3936833701478,13.9319072770535,16.847322196016,18.5503570306153,13.9866667511803,14.3098526083862,7.97883807416615,7.83778662196135,16.9806866502321,12.366468970611,10.8181165886257,10.9166394119962,10.0272768962635,9.02774948597837,5.53813589596716,12.9797711407357,1.53783792718067,10.1129565301979,4.25947412950337,2.44878994106098,3.00727300986255,2.74533807847827,6.96911562974807,8.39708713941948,8.56839837587428,5.72802370809068,10.2809197913869,10.9792512248498,9.61247533314031,8.99079672862215,7.42432716737004,10.3845546716312,12.8112856374271,9.42321391142507,5.83267379813068,14.2908042009993,1.12738587736838,5.38259565758324,5.62558867554132,10.5003641705786,7.23295011475294,7.60302564708502,10.7968659554094,8.98410255423256,5.45268591013696,2.17425708743405,3.45636007509439,4.10814456816632,8.5144590421869,5.44368072973584,2.33857481360031,2.32734704367726,2.78153896693771,3.846254384639,2.21534290761866,2.92802704849628,3.50551310612999,3.93222122033678,2.43644701849381,3.07877893249054,3.50630706544707,18.8186218400625,5.10567692760349,2.42227412845584,2.3503846290971,18.9325802151547,11.4486310025221,13.7363718200449,15.0057865355346,17.0534515372024,12.4245405375755,10.5874804396651,15.4681788628637,8.76451229952807,5.48066015816514,9.82012066606611,5.40018000185445,7.20513925158753,8.60970577069989,9.83744592328458,9.65222332532843,15.1629451892392,14.1708892775931,11.6691224192781,9.01336599300324,9.92754945630076,10.0011027510727,11.1258930909003,12.5158491740808,8.84440241173291,10.1391719956096,11.5062068245506,13.2970940607233,11.5885525852813,10.0512070672323,10.0021675169445,13.2108131577135,9.25964258225784,12.7746629249025,7.35994600671987,5.48590803816665,8.69631450180754,7.39152188836695,9.30217066446903,10.7284693673477,10.9998990259179,8.59761472502031,9.73357932320019,9.2346797415186,10.661703161497,11.9821368305416,12.1160513321943,7.36615877705441,8.6764631064141,9.83823716003821,11.9909077410214,7.71974307869848,13.3220053509945,18.363679878609,15.6619907574856,11.1296561097802 | |phase1_expression=10.089377367602,0.348975407639361,1.36499771816861,1.20985684522732,0.500895729946347,1.17515490338323,0.233612640595526,0.645616617207881,0.84473233291,0.234064526321993,2.22583358693156,1.43589886191606,0.342401459862411,0.437102012094987,0,0.607425802169478,0.699561878128147,1.89277299214943,1.7824876368746,2.54633791078818,6.88850650223665,2.08510997521859,2.61199789138935,0.95995453676044,0.45881856213434,1.14846392823004,0.86152399231815,0,0.380046838912748,0.756090389279792,0.886922042621219,1.27006134691926,0.61506478758457,0,1.73310971850765,2.1610503896604,2.6542016314108,0,0,0,0,0,0,9.69405498411945,10.3404469843905,7.89251034295231,14.8654355426127,6.75877984779384,19.7717564461025,12.6379434398284,7.13930750289349,11.5002051491977,1.17447824240415,0.725362142011344,4.7053131879945,9.51859913333004,12.6074713573053,15.9858348606007,28.5266209812033,22.7466121086974,20.2826049121977,12.5372476865579,2.66788438833342,2.2497492932035,0.988866362566974,2.1314403448383,8.68840320503374,11.5265491596466,21.7748185847803,17.6857779214515,18.9292465216244,13.9968982357864,10.1599528837742,17.6386750869534,16.2937300731002,14.7075005857603,8.8092704799511,8.55505165170758,8.90917892886212,38.774568592677,31.7462123300361,26.5665818983948,7.81712397203867,14.069065250792,8.86229837105499,16.4992007865254,13.3829379951157,22.7407323906867,4.08921443999194,4.23200736597999,13.9134954576805,3.44169550792555,0,0,0.649776417447669,0.896053774194671,6.46044332606059,7.15807354827843,7.01422212427746,7.0667914902068,9.43650912503759,11.5493829672886,7.64415719119937,14.2213340630666,6.27824018932521,5.06719730950197,5.56076889516262,3.53970027129086,1.29468941823586,17.9614988268438,7.80683970447611,8.52503339273995,6.91846491768175,6.63179618431539,10.1126288136706,11.0586600370114,6.42706916109372,12.8693427658721,6.19227386364912,18.2796540440572,8.83366073841574,7.75800405016355,5.59175283654366,18.4451902117275,20.7352239745321,3.57639877292028,1.43778149407104,1.79970819298022,1.90605340609597,10.7849260371472,12.8100168789215,21.1099311549612,8.34356736922927,8.18289463457058,13.9217989854905,8.59878694259116,15.785101396799,9.45492976636707,9.09801930361229,16.414464759145,9.10843100738926,7.12696523743766,11.5239763075424,15.3718914192429,16.805015290378,13.0675994690547,14.0552586839593,23.5420067372504,8.83828771024653,12.2918952109083,15.3077478022636,10.7405908889512,13.6243152120543,12.1888258282758,9.67176041117334,7.56330213910274,0.702213187313235,0,0.284163499395593,7.87077935634907,7.03578179943289,5.04173772090842,11.3637473080901,9.05115466038058,9.87309522479221,10.4640275137684,12.6088498657821,12.37712629092,13.8230273927324,14.4467368389604,21.2400281010142,18.5673984030172,17.344459107993,27.2439030083555,10.9350773253346,23.4622516224768,7.59963200862735,1.58670339998127,9.38468302355029,11.147360249301,6.70110798874885,5.84882221407693,4.22518283305254,3.99473814836374,3.32170343081158,4.11747386810027,5.27803938480566,6.56556357735798,5.06906626509712,3.59527763461689,2.59365659849633,6.37252074413975,8.15571974098251,6.85491075658373,7.88954149711563,8.14605311381257,8.14600446104028,15.9909669349926,12.0781785907331,8.85660887877613,7.06494275286187,8.26760998276064,1.48226313543574,1.50160595144485,2.55526693647164,1.12431056192427,0.608580364165509,1.68824011826692,1.2731292589071,3.16465751195892,1.94562272130042,1.09824565275233,5.75072826109418,2.60498663367952,2.80833905803104,3.78868316920668,0.717589654087649,1.4473305640901,11.4546977903295,9.09558776498327,8.63714375142737,6.62005834523234,6.57132695207806,6.70025029767263,9.04565835366852,14.8301572371927,14.817703545982,14.8381342064679,18.4967531642685,16.3863314715738,13.6421135674058,14.7542039753142,0,0,4.91764273019036,7.45029215022778,13.0045977890111,13.9481907044722,5.73772308818364,18.6828486131236,9.14973836307144,12.1036010731958,12.7099804662351,11.9484398976276,14.2591151412732,12.7384438854975,16.5972387686707,15.7818163272108,19.3691011193797,11.2462460747632,10.0777460497871,11.7523298420388,13.3567306669932,11.3829384851049,13.2745138339963,8.74010290157933,9.06970670894253,5.09233715340925,7.97315110778086,8.60818414242997,14.2135561242522,11.2695456138027,10.3384239731569,7.9009189483954,8.4334886859999,10.3135543248187,16.3411010761818,9.00305470156551,15.3936833701478,13.9319072770535,16.847322196016,18.5503570306153,13.9866667511803,14.3098526083862,7.97883807416615,7.83778662196135,16.9806866502321,12.366468970611,10.8181165886257,10.9166394119962,10.0272768962635,9.02774948597837,5.53813589596716,12.9797711407357,1.53783792718067,10.1129565301979,4.25947412950337,2.44878994106098,3.00727300986255,2.74533807847827,6.96911562974807,8.39708713941948,8.56839837587428,5.72802370809068,10.2809197913869,10.9792512248498,9.61247533314031,8.99079672862215,7.42432716737004,10.3845546716312,12.8112856374271,9.42321391142507,5.83267379813068,14.2908042009993,1.12738587736838,5.38259565758324,5.62558867554132,10.5003641705786,7.23295011475294,7.60302564708502,10.7968659554094,8.98410255423256,5.45268591013696,2.17425708743405,3.45636007509439,4.10814456816632,8.5144590421869,5.44368072973584,2.33857481360031,2.32734704367726,2.78153896693771,3.846254384639,2.21534290761866,2.92802704849628,3.50551310612999,3.93222122033678,2.43644701849381,3.07877893249054,3.50630706544707,18.8186218400625,5.10567692760349,2.42227412845584,2.3503846290971,18.9325802151547,11.4486310025221,13.7363718200449,15.0057865355346,17.0534515372024,12.4245405375755,10.5874804396651,15.4681788628637,8.76451229952807,5.48066015816514,9.82012066606611,5.40018000185445,7.20513925158753,8.60970577069989,9.83744592328458,9.65222332532843,15.1629451892392,14.1708892775931,11.6691224192781,9.01336599300324,9.92754945630076,10.0011027510727,11.1258930909003,12.5158491740808,8.84440241173291,10.1391719956096,11.5062068245506,13.2970940607233,11.5885525852813,10.0512070672323,10.0021675169445,13.2108131577135,9.25964258225784,12.7746629249025,7.35994600671987,5.48590803816665,8.69631450180754,7.39152188836695,9.30217066446903,10.7284693673477,10.9998990259179,8.59761472502031,9.73357932320019,9.2346797415186,10.661703161497,11.9821368305416,12.1160513321943,7.36615877705441,8.6764631064141,9.83823716003821,11.9909077410214,7.71974307869848,13.3220053509945,18.363679878609,15.6619907574856,11.1296561097802 | ||
|short_description=p1@Cuedc1 | |short_description=p1@Cuedc1 | ||
}} | }} |
Latest revision as of 22:32, 25 September 2015
Short description: | p1@Cuedc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cuedc1_5end |
Coexpression cluster: | NA |
Association with transcript: | -35bp_to_ENSMUST00000133149_5end |
EntrezGene: | Cuedc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.00e-11 | 39 |
electrically active cell | 4.00e-11 | 39 |
neuron | 6.22e-11 | 33 |
neuronal stem cell | 6.22e-11 | 33 |
neuroblast | 6.22e-11 | 33 |
electrically signaling cell | 6.22e-11 | 33 |
neural cell | 3.26e-10 | 43 |
ectodermal cell | 3.70e-10 | 44 |
neurectodermal cell | 3.70e-10 | 44 |
CNS neuron (sensu Vertebrata) | 1.61e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.61e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.87e-19 | 92 |
ectoderm-derived structure | 4.34e-19 | 95 |
ectoderm | 4.34e-19 | 95 |
presumptive ectoderm | 4.34e-19 | 95 |
central nervous system | 4.52e-17 | 73 |
nervous system | 4.97e-16 | 75 |
neurectoderm | 1.01e-15 | 64 |
neural plate | 1.01e-15 | 64 |
presumptive neural plate | 1.01e-15 | 64 |
ecto-epithelium | 2.55e-15 | 73 |
neural tube | 6.67e-13 | 52 |
neural rod | 6.67e-13 | 52 |
future spinal cord | 6.67e-13 | 52 |
neural keel | 6.67e-13 | 52 |
regional part of nervous system | 3.77e-12 | 54 |
pre-chordal neural plate | 1.74e-11 | 49 |
brain | 5.06e-11 | 47 |
future brain | 5.06e-11 | 47 |
regional part of brain | 6.72e-11 | 46 |
anatomical conduit | 1.12e-10 | 122 |
anterior neural tube | 3.04e-09 | 40 |
regional part of forebrain | 3.61e-09 | 39 |
forebrain | 3.61e-09 | 39 |
future forebrain | 3.61e-09 | 39 |
tube | 2.68e-08 | 114 |
gray matter | 5.09e-08 | 34 |