FFCP PHASE1:Mm9::chr2:156960848..156960870,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56045 | |EntrezGene=56045 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2200 | |||
|TSSclassifier=NA | |||
|UniProt=F6TVP2 | |UniProt=F6TVP2 | ||
|association_with_transcript=0bp_to_ENSMUST00000139263_5end | |association_with_transcript=0bp_to_ENSMUST00000139263_5end | ||
|cluster_id=chr2:156960848..156960870,- | |||
|description=CAGE_peak_2_at_Samhd1_5end | |description=CAGE_peak_2_at_Samhd1_5end | ||
|id=chr2:156960848..156960870,- | |id=chr2:156960848..156960870,- | ||
|ontology_enrichment_celltype=CL:0000063!1.20e-10!66;CL:0000988!2.39e-08!32;CL:0002032!2.39e-08!32;CL:0000037!2.39e-08!32;CL:0000566!2.39e-08!32;CL:0000837!2.39e-08!32;CL:0002320!2.86e-08!46;CL:0000134!2.86e-08!46;CL:0002031!4.44e-08!25;CL:0000219!1.72e-07!54 | |ontology_enrichment_celltype=CL:0000063!1.20e-10!66;CL:0000988!2.39e-08!32;CL:0002032!2.39e-08!32;CL:0000037!2.39e-08!32;CL:0000566!2.39e-08!32;CL:0000837!2.39e-08!32;CL:0002320!2.86e-08!46;CL:0000134!2.86e-08!46;CL:0002031!4.44e-08!25;CL:0000219!1.72e-07!54 | ||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.37e-08,32;CL:0002032,2.37e-08,32;CL:0000037,2.37e-08,32;CL:0000837,2.37e-08,32;CL:0002320,2.84e-08,46;CL:0000134,2.84e-08,46;CL:0002031,4.40e-08,25;CL:0000219,1.71e-07,54 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!5.20e-13!130;UBERON:0000925!5.20e-13!130;UBERON:0006595!5.20e-13!130;UBERON:0001007!1.38e-12!128;UBERON:0001555!1.38e-12!128;UBERON:0007026!1.38e-12!128;UBERON:0004921!4.74e-12!126;UBERON:0004185!4.74e-12!126;UBERON:0002384!2.86e-08!46;UBERON:0005409!4.05e-08!59;UBERON:0002204!8.20e-08!32;UBERON:0004923!2.19e-07!24 | |ontology_enrichment_uberon=UBERON:0004119!5.20e-13!130;UBERON:0000925!5.20e-13!130;UBERON:0006595!5.20e-13!130;UBERON:0001007!1.38e-12!128;UBERON:0001555!1.38e-12!128;UBERON:0007026!1.38e-12!128;UBERON:0004921!4.74e-12!126;UBERON:0004185!4.74e-12!126;UBERON:0002384!2.86e-08!46;UBERON:0005409!4.05e-08!59;UBERON:0002204!8.20e-08!32;UBERON:0004923!2.19e-07!24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.05e-14,118;UBERON:0000925,1.05e-14,118;UBERON:0006595,1.05e-14,118;UBERON:0001007,2.88e-14,116;UBERON:0001555,2.88e-14,116;UBERON:0007026,2.88e-14,116;UBERON:0004921,1.06e-13,114;UBERON:0005409,9.25e-11,47;UBERON:0002384,2.84e-08,46;UBERON:0002204,8.20e-08,32;UBERON:0000160,8.75e-08,31;UBERON:0004923,2.19e-07,24 | |||
|phase1_expression=2.88267924788629,14.6569671208532,20.4749657725291,33.5735274550581,31.0555352566735,15.4448930158939,18.9226238882376,92.9687928779349,25.6235474316033,35.109678948299,5.47897498321616,4.06838010876216,53.243427008605,47.9938009280296,32.3116468961193,29.9663395736942,24.4846657344851,40.3791571658544,41.4085589489331,34.7999514474385,9.0145887560134,23.8298282882125,26.3811787030325,16.9591968161011,14.2233754261645,13.7815671387605,15.5074318617267,11.635446565038,17.29213117053,18.6502296022349,10.199603490144,17.14582818341,16.6067492647834,0,9.24325183204079,9.80784407615105,7.14592746918292,161.971741095183,110.168283577856,142.921982104847,148.822566471847,148.903915720941,114.580443315352,13.09326906946,12.3679856087808,12.2976323948327,12.5182615095686,6.1047043786525,7.68901639570651,8.1660557611199,15.3985063787899,23.0004102983955,31.3753473327967,55.8528849348735,45.0365690850902,12.8629718017974,15.1862723167541,13.4074743992135,2.22548106945558,1.05798195854407,3.80298842103708,6.77689064138264,8.00365316500025,23.3973926493164,18.7884608887725,17.7620028736525,8.08920298399693,9.22123932771731,3.21437798156281,3.51015439662396,2.10324961351382,1.71390590642282,2.87129103237098,3.06226998037385,2.97120960156533,1.83843757322004,3.30347642998166,1.40456071893706,1.99688493233117,3.29715719325485,2.92760459527711,3.12548022334056,2.51264699101243,2.8138130501584,1.83357897332172,2.06240009831567,3.98640706237488,2.79599168737951,2.95332153999418,5.51672388779534,20.2905142091174,13.7667820317022,2.03991400112325,3.2382191498269,3.89865850468601,5.37632264516803,9.40977614882737,46.6979083863878,38.4483286812246,37.4539948980961,1.26759077799012,44.9142670950112,25.4805239706646,14.2213340630666,9.74209684550464,9.12095515710355,15.1657333504435,10.3907330544345,98.9142715532196,9.35185476108396,5.89850111004862,5.78484408793068,7.84092690670599,3.91878865436819,5.87943535678524,7.41432888845085,11.3709685157812,19.2317144703483,38.0382537338446,8.57364304721269,16.5631138845295,14.5462575940567,24.2309289583559,2.63502717310392,2.51336048176146,29.377561348988,8.8663192134381,10.1983464268879,15.2484272487678,4.6435098215495,2.74500361691176,1.38219787324151,1.56441888173049,2.04572365864264,2.28566849015516,2.10913641988085,7.53611292492341,16.6705340617525,5.81262344397452,6.31325567659422,4.68433594665733,5.9774547152703,5.04173963454978,5.42537344208574,4.01415344992834,3.45907044769094,4.49768277886698,6.98499100995342,9.7005596819779,11.3463648100692,10.0292140773451,3.94552318369635,6.11703948296315,9.05455632957633,10.0833246839892,4.57778813682534,15.4486901208912,9.52187256324446,14.4923384691752,4.97101854085205,6.56672967947069,4.14142741360334,6.15536312521547,3.73852040320067,4.01094493507183,3.25547522650571,3.21928081679543,3.61972561338225,3.12663714835613,4.26835406605648,7.29619285912702,7.16379938384128,10.0993053033883,8.72341721942416,1.05144974282064,2.16099685996497,59.8057997200674,22.7427487330648,7.46508876873319,9.0572302025571,8.37638498593607,9.4791256572971,11.5636582799333,10.8428606884159,24.2009821387701,13.6700132420929,15.3314477368164,15.7175612912509,14.8172706210531,43.1433316154026,22.4783571869682,29.8711909881551,4.36236172192088,5.02693455482807,3.38123207019241,6.10953983535943,7.37019451236978,4.20814919341911,3.79419222745544,5.60918562322488,3.92496819603437,5.05928372079382,8.30067355844017,14.8492144087324,13.1694526725846,15.9652099793246,13.5916281330297,12.0588579876208,9.16653066413111,13.8094145976389,9.56597837972709,10.7078951143352,23.0029130443767,16.3742016974142,9.04909252032226,8.5876818502018,11.8402292924462,7.23665282045051,48.4053358236504,8.90609635321278,10.2667935158476,8.82674446030978,11.0304416695596,18.2581820611579,26.4228441383475,23.2209040950781,20.1772984455924,22.1464689648775,16.1049316344062,27.6929001869597,34.0189414275814,37.030158996867,72.3798162908507,99.5347401388238,18.1952781017043,17.6599517635029,3.37156238974363,3.98519734413491,13.4426655208874,8.83648245215305,6.62567260774139,8.98009111882268,7.32439552291516,8.12493913038677,4.23317480756549,3.39691836946599,8.90583543684768,6.72188473196017,6.7198922250909,3.53453448063988,8.94222536812092,6.58842733568844,5.04949573996086,12.3727592229402,7.96470830039777,7.04063844849446,11.4882951646605,7.35559811048003,7.08724542913855,7.07100840271033,11.1124166062335,6.90714086007261,7.12994756769443,8.21695570633122,3.16255825724996,3.09406629744561,6.12791290356818,5.58189391497062,5.43306471887569,4.50107773566344,4.25616560741457,4.99432689285798,5.26556865926787,7.30715877875038,25.8138878870081,8.89694697628045,9.04166432025344,13.3557864882599,10.4951877352339,8.32318364008551,7.04296829618505,4.76008609260678,19.5292160542,3.15223013417866,33.4906926363791,17.9556575128004,32.779431344439,22.2274779265535,28.5690935936943,31.3426097292936,9.34881364966204,10.636310376598,6.77179871641677,18.1387417422872,10.1227517945963,8.53941761932765,10.1525020372493,8.78170843260769,9.38959024108564,7.95699643670442,9.17453358551229,12.3025292732494,26.7006844981093,14.2908042009993,2.81846469342095,7.17679421011098,5.79104716599842,7.97249872210595,7.23295011475294,7.43406952159424,9.15386461436881,9.24451132392046,8.38874755405687,4.59009829569411,6.33666013767304,11.0603892219862,8.10900861160657,5.85452455839515,5.06691209613401,2.14832034800978,1.98681354781265,6.61074972359829,3.39685912501528,5.95702054694071,3.88654713940499,5.44461399738939,7.50425681696094,5.00301576529713,6.778860326531,9.06921534460846,8.87943813496259,6.54911153249173,4.36500002546604,16.0347363046718,33.032115679408,9.34073283763052,28.5109944175158,15.0471631210609,2.82375921308533,2.30162618253588,1.71868654031819,1.71853182343688,0.685082519770642,2.2661816921691,1.35004500046361,0.900642406448441,2.26571204492102,2.07104124700728,7.9916257639816,7.18244772121856,9.04888110496911,7.77941494618541,7.1268475293514,6.25067928730048,6.88964856185007,6.59312183164461,4.81378814387723,5.81203587056734,5.83002389747551,5.84741658296836,5.89941497060259,5.50616310681876,5.6286759576501,6.66811167796303,6.48952225291191,5.98018583437486,7.82963211526283,6.47675248591348,5.82877729055206,7.63145966485151,5.00715998889374,7.26732083161643,6.30532848782715,4.48457421825885,5.48783918618318,7.89209134313529,7.19761803383067,5.05028044491965,5.81311588808453,7.38783617816726,6.54769669071503,5.57772628269478,6.75173138433995,5.49583271463481,8.4215379040347,11.3881658645598,8.7992632751668,9.26483960301965,10.8977882741598 | |phase1_expression=2.88267924788629,14.6569671208532,20.4749657725291,33.5735274550581,31.0555352566735,15.4448930158939,18.9226238882376,92.9687928779349,25.6235474316033,35.109678948299,5.47897498321616,4.06838010876216,53.243427008605,47.9938009280296,32.3116468961193,29.9663395736942,24.4846657344851,40.3791571658544,41.4085589489331,34.7999514474385,9.0145887560134,23.8298282882125,26.3811787030325,16.9591968161011,14.2233754261645,13.7815671387605,15.5074318617267,11.635446565038,17.29213117053,18.6502296022349,10.199603490144,17.14582818341,16.6067492647834,0,9.24325183204079,9.80784407615105,7.14592746918292,161.971741095183,110.168283577856,142.921982104847,148.822566471847,148.903915720941,114.580443315352,13.09326906946,12.3679856087808,12.2976323948327,12.5182615095686,6.1047043786525,7.68901639570651,8.1660557611199,15.3985063787899,23.0004102983955,31.3753473327967,55.8528849348735,45.0365690850902,12.8629718017974,15.1862723167541,13.4074743992135,2.22548106945558,1.05798195854407,3.80298842103708,6.77689064138264,8.00365316500025,23.3973926493164,18.7884608887725,17.7620028736525,8.08920298399693,9.22123932771731,3.21437798156281,3.51015439662396,2.10324961351382,1.71390590642282,2.87129103237098,3.06226998037385,2.97120960156533,1.83843757322004,3.30347642998166,1.40456071893706,1.99688493233117,3.29715719325485,2.92760459527711,3.12548022334056,2.51264699101243,2.8138130501584,1.83357897332172,2.06240009831567,3.98640706237488,2.79599168737951,2.95332153999418,5.51672388779534,20.2905142091174,13.7667820317022,2.03991400112325,3.2382191498269,3.89865850468601,5.37632264516803,9.40977614882737,46.6979083863878,38.4483286812246,37.4539948980961,1.26759077799012,44.9142670950112,25.4805239706646,14.2213340630666,9.74209684550464,9.12095515710355,15.1657333504435,10.3907330544345,98.9142715532196,9.35185476108396,5.89850111004862,5.78484408793068,7.84092690670599,3.91878865436819,5.87943535678524,7.41432888845085,11.3709685157812,19.2317144703483,38.0382537338446,8.57364304721269,16.5631138845295,14.5462575940567,24.2309289583559,2.63502717310392,2.51336048176146,29.377561348988,8.8663192134381,10.1983464268879,15.2484272487678,4.6435098215495,2.74500361691176,1.38219787324151,1.56441888173049,2.04572365864264,2.28566849015516,2.10913641988085,7.53611292492341,16.6705340617525,5.81262344397452,6.31325567659422,4.68433594665733,5.9774547152703,5.04173963454978,5.42537344208574,4.01415344992834,3.45907044769094,4.49768277886698,6.98499100995342,9.7005596819779,11.3463648100692,10.0292140773451,3.94552318369635,6.11703948296315,9.05455632957633,10.0833246839892,4.57778813682534,15.4486901208912,9.52187256324446,14.4923384691752,4.97101854085205,6.56672967947069,4.14142741360334,6.15536312521547,3.73852040320067,4.01094493507183,3.25547522650571,3.21928081679543,3.61972561338225,3.12663714835613,4.26835406605648,7.29619285912702,7.16379938384128,10.0993053033883,8.72341721942416,1.05144974282064,2.16099685996497,59.8057997200674,22.7427487330648,7.46508876873319,9.0572302025571,8.37638498593607,9.4791256572971,11.5636582799333,10.8428606884159,24.2009821387701,13.6700132420929,15.3314477368164,15.7175612912509,14.8172706210531,43.1433316154026,22.4783571869682,29.8711909881551,4.36236172192088,5.02693455482807,3.38123207019241,6.10953983535943,7.37019451236978,4.20814919341911,3.79419222745544,5.60918562322488,3.92496819603437,5.05928372079382,8.30067355844017,14.8492144087324,13.1694526725846,15.9652099793246,13.5916281330297,12.0588579876208,9.16653066413111,13.8094145976389,9.56597837972709,10.7078951143352,23.0029130443767,16.3742016974142,9.04909252032226,8.5876818502018,11.8402292924462,7.23665282045051,48.4053358236504,8.90609635321278,10.2667935158476,8.82674446030978,11.0304416695596,18.2581820611579,26.4228441383475,23.2209040950781,20.1772984455924,22.1464689648775,16.1049316344062,27.6929001869597,34.0189414275814,37.030158996867,72.3798162908507,99.5347401388238,18.1952781017043,17.6599517635029,3.37156238974363,3.98519734413491,13.4426655208874,8.83648245215305,6.62567260774139,8.98009111882268,7.32439552291516,8.12493913038677,4.23317480756549,3.39691836946599,8.90583543684768,6.72188473196017,6.7198922250909,3.53453448063988,8.94222536812092,6.58842733568844,5.04949573996086,12.3727592229402,7.96470830039777,7.04063844849446,11.4882951646605,7.35559811048003,7.08724542913855,7.07100840271033,11.1124166062335,6.90714086007261,7.12994756769443,8.21695570633122,3.16255825724996,3.09406629744561,6.12791290356818,5.58189391497062,5.43306471887569,4.50107773566344,4.25616560741457,4.99432689285798,5.26556865926787,7.30715877875038,25.8138878870081,8.89694697628045,9.04166432025344,13.3557864882599,10.4951877352339,8.32318364008551,7.04296829618505,4.76008609260678,19.5292160542,3.15223013417866,33.4906926363791,17.9556575128004,32.779431344439,22.2274779265535,28.5690935936943,31.3426097292936,9.34881364966204,10.636310376598,6.77179871641677,18.1387417422872,10.1227517945963,8.53941761932765,10.1525020372493,8.78170843260769,9.38959024108564,7.95699643670442,9.17453358551229,12.3025292732494,26.7006844981093,14.2908042009993,2.81846469342095,7.17679421011098,5.79104716599842,7.97249872210595,7.23295011475294,7.43406952159424,9.15386461436881,9.24451132392046,8.38874755405687,4.59009829569411,6.33666013767304,11.0603892219862,8.10900861160657,5.85452455839515,5.06691209613401,2.14832034800978,1.98681354781265,6.61074972359829,3.39685912501528,5.95702054694071,3.88654713940499,5.44461399738939,7.50425681696094,5.00301576529713,6.778860326531,9.06921534460846,8.87943813496259,6.54911153249173,4.36500002546604,16.0347363046718,33.032115679408,9.34073283763052,28.5109944175158,15.0471631210609,2.82375921308533,2.30162618253588,1.71868654031819,1.71853182343688,0.685082519770642,2.2661816921691,1.35004500046361,0.900642406448441,2.26571204492102,2.07104124700728,7.9916257639816,7.18244772121856,9.04888110496911,7.77941494618541,7.1268475293514,6.25067928730048,6.88964856185007,6.59312183164461,4.81378814387723,5.81203587056734,5.83002389747551,5.84741658296836,5.89941497060259,5.50616310681876,5.6286759576501,6.66811167796303,6.48952225291191,5.98018583437486,7.82963211526283,6.47675248591348,5.82877729055206,7.63145966485151,5.00715998889374,7.26732083161643,6.30532848782715,4.48457421825885,5.48783918618318,7.89209134313529,7.19761803383067,5.05028044491965,5.81311588808453,7.38783617816726,6.54769669071503,5.57772628269478,6.75173138433995,5.49583271463481,8.4215379040347,11.3881658645598,8.7992632751668,9.26483960301965,10.8977882741598 | ||
|short_description=p2@Samhd1 | |short_description=p2@Samhd1 | ||
}} | }} |
Latest revision as of 00:33, 26 September 2015
Short description: | p2@Samhd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Samhd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2200 |
Association with transcript: | 0bp_to_ENSMUST00000139263_5end |
EntrezGene: | Samhd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.37e-08 | 32 |
hematopoietic oligopotent progenitor cell | 2.37e-08 | 32 |
hematopoietic stem cell | 2.37e-08 | 32 |
hematopoietic multipotent progenitor cell | 2.37e-08 | 32 |
connective tissue cell | 2.84e-08 | 46 |
mesenchymal cell | 2.84e-08 | 46 |
hematopoietic lineage restricted progenitor cell | 4.40e-08 | 25 |
motile cell | 1.71e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.05e-14 | 118 |
endoderm | 1.05e-14 | 118 |
presumptive endoderm | 1.05e-14 | 118 |
digestive system | 2.88e-14 | 116 |
digestive tract | 2.88e-14 | 116 |
primitive gut | 2.88e-14 | 116 |
subdivision of digestive tract | 1.06e-13 | 114 |
gastrointestinal system | 9.25e-11 | 47 |
connective tissue | 2.84e-08 | 46 |
musculoskeletal system | 8.20e-08 | 32 |
intestine | 8.75e-08 | 31 |
organ component layer | 2.19e-07 | 24 |