FFCP PHASE1:Mm9::chr5:38550738..38550756,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18196 | |EntrezGene=18196 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1312 | |||
|TSSclassifier=NA | |||
|UniProt=Q62092 | |UniProt=Q62092 | ||
|association_with_transcript=-32bp_to_ENSMUST00000031009,NM_010942,uc008xga.1_5end | |association_with_transcript=-32bp_to_ENSMUST00000031009,NM_010942,uc008xga.1_5end | ||
|cluster_id=chr5:38550738..38550756,- | |||
|description=CAGE_peak_3_at_Nsg1_5end | |description=CAGE_peak_3_at_Nsg1_5end | ||
|id=chr5:38550738..38550756,- | |id=chr5:38550738..38550756,- | ||
|ontology_enrichment_celltype=CL:0000393!1.60e-16!39;CL:0000211!1.60e-16!39;CL:0000540!2.61e-16!33;CL:0000047!2.61e-16!33;CL:0000031!2.61e-16!33;CL:0000404!2.61e-16!33;CL:0000117!7.63e-16!23;CL:0000337!7.63e-16!23;CL:0002319!4.74e-15!43;CL:0000221!9.62e-15!44;CL:0000133!9.62e-15!44;CL:0000055!1.08e-14!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.90e-18,39;CL:0000211,2.90e-18,39;CL:0000540,5.03e-18,33;CL:0000047,5.03e-18,33;CL:0000031,5.03e-18,33;CL:0000404,5.03e-18,33;CL:0000117,1.66e-17,23;CL:0000337,1.66e-17,23;CL:0002319,1.08e-15,43;CL:0000221,6.63e-15,44;CL:0000133,6.63e-15,44;CL:0002321,7.25e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.91e-31!73;UBERON:0005743!1.91e-31!73;UBERON:0000073!3.13e-30!75;UBERON:0001016!3.13e-30!75;UBERON:0002346!9.06e-28!71;UBERON:0003075!9.06e-28!71;UBERON:0007284!9.06e-28!71;UBERON:0004121!1.54e-27!102;UBERON:0000924!1.54e-27!102;UBERON:0006601!1.54e-27!102;UBERON:0001049!1.47e-24!52;UBERON:0005068!1.47e-24!52;UBERON:0006241!1.47e-24!52;UBERON:0007135!1.47e-24!52;UBERON:0000955!7.91e-23!50;UBERON:0006238!7.91e-23!50;UBERON:0000033!2.07e-22!63;UBERON:0002616!2.77e-22!49;UBERON:0003056!3.45e-19!49;UBERON:0002020!3.37e-18!34;UBERON:0003080!1.26e-17!40;UBERON:0002780!4.50e-17!39;UBERON:0001890!4.50e-17!39;UBERON:0006240!4.50e-17!39;UBERON:0002791!8.57e-15!29;UBERON:0003528!8.57e-15!29;UBERON:0001893!8.57e-15!29;UBERON:0000153!1.47e-10!94;UBERON:0007811!2.33e-10!86;UBERON:0000956!6.48e-10!21;UBERON:0001869!6.48e-10!21;UBERON:0000203!6.48e-10!21;UBERON:0002619!6.99e-08!17;UBERON:0003076!1.48e-07!12;UBERON:0003057!1.48e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.07e-34,73;UBERON:0001016,1.69e-32,75;UBERON:0002346,1.60e-29,64;UBERON:0003075,1.60e-29,64;UBERON:0007284,1.60e-29,64;UBERON:0000073,3.18e-28,54;UBERON:0001049,1.03e-26,52;UBERON:0005068,1.03e-26,52;UBERON:0006241,1.03e-26,52;UBERON:0007135,1.03e-26,52;UBERON:0004121,3.16e-26,95;UBERON:0000924,3.16e-26,95;UBERON:0006601,3.16e-26,95;UBERON:0000955,1.13e-22,47;UBERON:0006238,1.13e-22,47;UBERON:0010371,1.62e-22,73;UBERON:0002616,4.46e-22,46;UBERON:0003056,1.30e-20,49;UBERON:0002020,1.36e-19,34;UBERON:0003080,5.32e-19,40;UBERON:0002780,2.19e-18,39;UBERON:0001890,2.19e-18,39;UBERON:0006240,2.19e-18,39;UBERON:0010314,7.10e-18,92;UBERON:0003528,8.20e-16,29;UBERON:0002791,8.20e-16,29;UBERON:0001893,8.20e-16,29;UBERON:0000956,2.09e-10,21;UBERON:0001869,2.09e-10,21;UBERON:0000203,2.09e-10,21;UBERON:0003076,2.97e-08,12;UBERON:0003057,2.97e-08,12;UBERON:0002619,3.71e-08,17;UBERON:0002420,8.20e-07,8;UBERON:0007245,8.20e-07,8;UBERON:0010009,8.20e-07,8;UBERON:0010011,8.20e-07,8;UBERON:0000454,8.20e-07,8 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.67441559540912,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40638862914521,4.25783111121961,7.70896359079063,3.12956537739216,3.2703773457067,3.51497892375155,0.777719596297134,2.09979632438044,4.31257693094915,0,0,0,1.54355661621568,1.43266719969378,2.06268836910977,61.0995711795985,56.0730438028355,55.7771635085438,3.04960078862219,0.889294796111139,2.6996991518442,1.97773272513395,2.1314403448383,2.69640099466564,3.84218305321555,15.3460626216547,24.5710807763677,19.9808713283813,41.9906947073591,30.7007271922743,27.0704666265048,25.1115134067779,23.8996884518605,20.9220173898839,21.7068474744819,22.2729473221553,50.9081070638548,51.6905186353615,45.8403766089949,29.8725808931478,18.5711661310454,17.72459674211,40.6587447953661,28.7590795214188,51.6326464936083,0.454357159999104,0.302286240427142,0.289864488701678,0,0,0,0,0,1.68533304158102,1.36344258062446,2.59786004602869,1.41335829804136,0.845060518660083,3.84979432242953,7.64415719119937,7.11066703153331,0,0,0,1.37020655662872,0.258937883647172,1.63286352971307,3.29622120855658,4.56698217468212,2.99800146432876,3.91878865436819,3.17489509266403,1.88499886994513,0,0.144599356919912,0,1.7794353494215,0.662524555381181,0,0,46.552146724836,59.0639713213943,0.510914110417183,0,0,0.127070227073065,15.8778077769112,9.15001205637253,24.7539073662343,7.12679712788333,6.13717097592793,17.0386196538839,15.8996437806402,2.34230536855727,0.870848794270651,0,0.210441855886474,3.6433724029557,6.89706313300419,6.30217454318722,4.9732589885786,6.05524842446818,5.89323113310309,7.02762934197966,1.81092359517311,4.31135985865684,4.9167580843633,2.63926686245923,2.41115305670332,1.94633074457919,0.696504333044333,0.823128545631774,0.796137067273973,0,0,0,0.414251545071004,0.234526059981096,0.720248245844059,0,0,0.771335564436891,0.232533944750408,0.804820204198858,0.467061369468678,0.16455984991348,0.492502392237286,0.162137619091711,0.438599962275997,0.219550115291051,0.134206418760372,6.09840850835969,22.3303008863047,0,0,1.70630600428187,1.39342003116263,1.15980715189884,0.605050573870028,0.444756087689741,0.190225626112559,0,1.15289268306808,1.00534083520108,0.795825888164603,0.58489226135736,0.898819408654221,0.648414149624083,0.199141273254367,3.98302592001472,1.14248512609729,1.1270773567308,1.01825663922657,1.55161989734101,0.841629838683823,0.69560190836683,0.295220295959204,0.470996183524124,0.123397163921801,0,0,0.393117990226406,0.449724224769707,0,0,0,0,0,0.274561413188081,1.43768206527355,0,0,0,0.179397413521912,0,2.21703828199926,2.84237117655727,2.60743962307241,1.69745085775188,1.17345124144251,0.167506257441816,1.42826184531608,1.75620283072019,2.52216230569906,1.55025282754142,1.43509291791738,1.3109065177259,1.55416483679306,2.74833211304872,0,0,0,0.551873492609465,18.1422166686205,24.2628191245861,3.60656879828686,0,4.41711507182759,6.24701990874622,4.30846795465598,3.58453196928828,3.7875774594007,1.98153571552183,2.83367491172426,7.89090816360542,3.95287777946523,8.9969968598106,1.13552068166615,3.20518086601059,1.79175655288934,0.659880491890142,2.65490276679926,2.6705869977048,0.604647113929502,0.754420319023592,0.295301892880773,0.614870295887855,0.516856586336442,0.363533729477506,0.712994756769443,0,0,0,2.7235168460303,4.14140516272013,3.62204314591713,5.14408884075822,2.12808280370728,4.45922044005176,6.08831376227848,4.87143918583359,0.938686832254841,0.21183207086382,1.7642271844397,0.16488625294148,0.807322133479528,0.603129249281559,0.716234064018819,0.656563598980245,1.1659233465194,16.3174265769249,0,0.206386867963223,0.925972636848558,0,0,0.228778173206523,0.339956859987711,0.139951452323658,0.276399947608848,0,2.68885594543965,1.62655573701479,0.972048067396211,1.25452977608681,1.9652630737156,1.21377911746339,0.909188012978695,0.785267825952089,0.648074866458964,0,21.9840246086834,1.04661582230785,0.330916980914195,0.388902376688095,1.03327858782185,0.168956125490778,0.704143431874524,0.781226309063701,0.104859344425711,8.45544422891021,12.6733202753461,0,0.405450430580328,0.205421914329655,0,0,0,0,0,0.201932899896295,0.15241361331,0.201652370273681,0,0,0,0.680191150845634,0,0,0,0.386379188064381,0.375364950902364,0.36630324853453,0.643105137237198,0,8.471277639256,7.82552902062201,8.02053718815155,13.4045482228076,8.22099023724771,5.2877572817279,8.10027000278167,9.45674526770863,6.34399372577886,8.80192529978094,3.84013186061454,6.78342284781753,7.68301225893604,1.70174701947806,5.8691685535835,7.53758384645058,5.55616819504038,2.88449080134452,4.1719497246936,5.81203587056734,3.29523089857312,3.9611531691076,4.49479235855436,4.35371036353111,4.42253110958222,5.71552429539688,6.02598494913249,6.17309505483856,7.00546031365621,4.71036544430071,3.42869252385415,4.61437096014278,3.09967046931517,4.21504608233753,5.08190654242785,5.07687647350059,5.12198324043763,4.47218509444333,5.16055632614275,5.05028044491965,5.45721083371201,4.43270170690036,3.6830793885272,5.57772628269478,3.47231899766054,9.49280196164194,4.21076895201735,3.86767897286937,2.86932498103265,0.661774257358546,1.15933917810211 | |phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.67441559540912,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40638862914521,4.25783111121961,7.70896359079063,3.12956537739216,3.2703773457067,3.51497892375155,0.777719596297134,2.09979632438044,4.31257693094915,0,0,0,1.54355661621568,1.43266719969378,2.06268836910977,61.0995711795985,56.0730438028355,55.7771635085438,3.04960078862219,0.889294796111139,2.6996991518442,1.97773272513395,2.1314403448383,2.69640099466564,3.84218305321555,15.3460626216547,24.5710807763677,19.9808713283813,41.9906947073591,30.7007271922743,27.0704666265048,25.1115134067779,23.8996884518605,20.9220173898839,21.7068474744819,22.2729473221553,50.9081070638548,51.6905186353615,45.8403766089949,29.8725808931478,18.5711661310454,17.72459674211,40.6587447953661,28.7590795214188,51.6326464936083,0.454357159999104,0.302286240427142,0.289864488701678,0,0,0,0,0,1.68533304158102,1.36344258062446,2.59786004602869,1.41335829804136,0.845060518660083,3.84979432242953,7.64415719119937,7.11066703153331,0,0,0,1.37020655662872,0.258937883647172,1.63286352971307,3.29622120855658,4.56698217468212,2.99800146432876,3.91878865436819,3.17489509266403,1.88499886994513,0,0.144599356919912,0,1.7794353494215,0.662524555381181,0,0,46.552146724836,59.0639713213943,0.510914110417183,0,0,0.127070227073065,15.8778077769112,9.15001205637253,24.7539073662343,7.12679712788333,6.13717097592793,17.0386196538839,15.8996437806402,2.34230536855727,0.870848794270651,0,0.210441855886474,3.6433724029557,6.89706313300419,6.30217454318722,4.9732589885786,6.05524842446818,5.89323113310309,7.02762934197966,1.81092359517311,4.31135985865684,4.9167580843633,2.63926686245923,2.41115305670332,1.94633074457919,0.696504333044333,0.823128545631774,0.796137067273973,0,0,0,0.414251545071004,0.234526059981096,0.720248245844059,0,0,0.771335564436891,0.232533944750408,0.804820204198858,0.467061369468678,0.16455984991348,0.492502392237286,0.162137619091711,0.438599962275997,0.219550115291051,0.134206418760372,6.09840850835969,22.3303008863047,0,0,1.70630600428187,1.39342003116263,1.15980715189884,0.605050573870028,0.444756087689741,0.190225626112559,0,1.15289268306808,1.00534083520108,0.795825888164603,0.58489226135736,0.898819408654221,0.648414149624083,0.199141273254367,3.98302592001472,1.14248512609729,1.1270773567308,1.01825663922657,1.55161989734101,0.841629838683823,0.69560190836683,0.295220295959204,0.470996183524124,0.123397163921801,0,0,0.393117990226406,0.449724224769707,0,0,0,0,0,0.274561413188081,1.43768206527355,0,0,0,0.179397413521912,0,2.21703828199926,2.84237117655727,2.60743962307241,1.69745085775188,1.17345124144251,0.167506257441816,1.42826184531608,1.75620283072019,2.52216230569906,1.55025282754142,1.43509291791738,1.3109065177259,1.55416483679306,2.74833211304872,0,0,0,0.551873492609465,18.1422166686205,24.2628191245861,3.60656879828686,0,4.41711507182759,6.24701990874622,4.30846795465598,3.58453196928828,3.7875774594007,1.98153571552183,2.83367491172426,7.89090816360542,3.95287777946523,8.9969968598106,1.13552068166615,3.20518086601059,1.79175655288934,0.659880491890142,2.65490276679926,2.6705869977048,0.604647113929502,0.754420319023592,0.295301892880773,0.614870295887855,0.516856586336442,0.363533729477506,0.712994756769443,0,0,0,2.7235168460303,4.14140516272013,3.62204314591713,5.14408884075822,2.12808280370728,4.45922044005176,6.08831376227848,4.87143918583359,0.938686832254841,0.21183207086382,1.7642271844397,0.16488625294148,0.807322133479528,0.603129249281559,0.716234064018819,0.656563598980245,1.1659233465194,16.3174265769249,0,0.206386867963223,0.925972636848558,0,0,0.228778173206523,0.339956859987711,0.139951452323658,0.276399947608848,0,2.68885594543965,1.62655573701479,0.972048067396211,1.25452977608681,1.9652630737156,1.21377911746339,0.909188012978695,0.785267825952089,0.648074866458964,0,21.9840246086834,1.04661582230785,0.330916980914195,0.388902376688095,1.03327858782185,0.168956125490778,0.704143431874524,0.781226309063701,0.104859344425711,8.45544422891021,12.6733202753461,0,0.405450430580328,0.205421914329655,0,0,0,0,0,0.201932899896295,0.15241361331,0.201652370273681,0,0,0,0.680191150845634,0,0,0,0.386379188064381,0.375364950902364,0.36630324853453,0.643105137237198,0,8.471277639256,7.82552902062201,8.02053718815155,13.4045482228076,8.22099023724771,5.2877572817279,8.10027000278167,9.45674526770863,6.34399372577886,8.80192529978094,3.84013186061454,6.78342284781753,7.68301225893604,1.70174701947806,5.8691685535835,7.53758384645058,5.55616819504038,2.88449080134452,4.1719497246936,5.81203587056734,3.29523089857312,3.9611531691076,4.49479235855436,4.35371036353111,4.42253110958222,5.71552429539688,6.02598494913249,6.17309505483856,7.00546031365621,4.71036544430071,3.42869252385415,4.61437096014278,3.09967046931517,4.21504608233753,5.08190654242785,5.07687647350059,5.12198324043763,4.47218509444333,5.16055632614275,5.05028044491965,5.45721083371201,4.43270170690036,3.6830793885272,5.57772628269478,3.47231899766054,9.49280196164194,4.21076895201735,3.86767897286937,2.86932498103265,0.661774257358546,1.15933917810211 | ||
|short_description=p3@Nsg1 | |short_description=p3@Nsg1 | ||
}} | }} |
Latest revision as of 00:35, 26 September 2015
Short description: | p3@Nsg1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nsg1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1312 |
Association with transcript: | -32bp_to_ENSMUST00000031009, NM_010942, uc008xga.1_5end |
EntrezGene: | Nsg1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.90e-18 | 39 |
electrically active cell | 2.90e-18 | 39 |
neuron | 5.03e-18 | 33 |
neuronal stem cell | 5.03e-18 | 33 |
neuroblast | 5.03e-18 | 33 |
electrically signaling cell | 5.03e-18 | 33 |
CNS neuron (sensu Vertebrata) | 1.66e-17 | 23 |
neuroblast (sensu Vertebrata) | 1.66e-17 | 23 |
neural cell | 1.08e-15 | 43 |
ectodermal cell | 6.63e-15 | 44 |
neurectodermal cell | 6.63e-15 | 44 |
embryonic cell | 7.25e-08 | 70 |