FFCP PHASE1:Mm9::chr5:81448759..81448787,+: Difference between revisions
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{{FFCP|EntrezGene=319387|HGNC=|MCL_coexpression_id=2430|UniProt=|association_with_transcript=-375bp_to_ENSMUST00000147226_5end|description=CAGE_peak_1_at_Lphn3_5end|id=chr5:81448759..81448787,+|ontology_enrichment_celltype=CL:0000540!7.54e-13!33;CL:0000047!7.54e-13!33;CL:0000031!7.54e-13!33;CL:0000404!7.54e-13!33;CL:0000221!3.27e-12!44;CL:0000133!3.27e-12!44;CL:0002319!7.44e-12!43;CL:0000117!5.95e-10!23;CL:0000337!5.95e-10!23;CL:0000393!7.56e-09!39;CL:0000211!7.56e-09!39;CL:0000055!5.80e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.42e-13,33;CL:0000047,3.42e-13,33;CL:0000031,3.42e-13,33;CL:0000404,3.42e-13,33;CL:0000221,1.55e-12,44;CL:0000133,1.55e-12,44;CL:0002319,3.62e-12,43;CL:0000117,3.30e-10,23;CL:0000337,3.30e-10,23;CL:0000393,1.26e-08,39;CL:0000211,1.26e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.62e-21!102;UBERON:0000924!3.62e-21!102;UBERON:0006601!3.62e-21!102;UBERON:0000073!6.56e-21!75;UBERON:0001016!6.56e-21!75;UBERON:0001017!3.06e-20!73;UBERON:0005743!3.06e-20!73;UBERON:0002346!2.34e-15!71;UBERON:0003075!2.34e-15!71;UBERON:0007284!2.34e-15!71;UBERON:0000033!1.60e-14!63;UBERON:0001049!3.17e-13!52;UBERON:0005068!3.17e-13!52;UBERON:0006241!3.17e-13!52;UBERON:0007135!3.17e-13!52;UBERON:0003056!2.97e-12!49;UBERON:0000955!9.84e-12!50;UBERON:0006238!9.84e-12!50;UBERON:0002616!1.19e-11!49;UBERON:0000468!6.42e-11!333;UBERON:0003080!3.21e-09!40;UBERON:0000922!5.86e-09!328;UBERON:0002780!7.11e-09!39;UBERON:0001890!7.11e-09!39;UBERON:0006240!7.11e-09!39;UBERON:0002020!1.60e-08!34;UBERON:0000153!5.81e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.39e-22,95;UBERON:0000924,2.39e-22,95;UBERON:0006601,2.39e-22,95;UBERON:0001016,1.69e-21,75;UBERON:0001017,8.27e-21,73;UBERON:0002346,5.00e-17,64;UBERON:0003075,5.00e-17,64;UBERON:0007284,5.00e-17,64;UBERON:0010371,1.11e-16,73;UBERON:0000073,5.81e-15,54;UBERON:0001049,1.40e-13,52;UBERON:0005068,1.40e-13,52;UBERON:0006241,1.40e-13,52;UBERON:0007135,1.40e-13,52;UBERON:0003056,1.41e-12,49;UBERON:0010314,6.91e-11,92;UBERON:0000955,1.63e-10,47;UBERON:0006238,1.63e-10,47;UBERON:0002616,1.99e-10,46;UBERON:0003080,1.88e-09,40;UBERON:0002780,4.26e-09,39;UBERON:0001890,4.26e-09,39;UBERON:0006240,4.26e-09,39;UBERON:0002020,9.79e-09,34;UBERON:0000922,4.04e-08,320|phase1_expression=10.089377367602,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0.666219523631325,0.809901069559304,1.39912375625629,0.157731082679119,0.274228867211478,0.84877930359606,7.82398269389842,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0.588231488031014,0.683045484958446,0,0.503587271902309,0.709638518536602,0.183546752161682,1.56478268869608,1.74420125104357,2.85592037554813,3.30530828426282,1.67983705950435,11.5002051491977,0,0,0,0,0.573066879877513,1.03134418455488,29.9428362072205,26.9785399428737,32.9592329823213,1.0165335962074,2.66788438833342,0,0,0,2.99600110518405,5.76327457982332,3.62913643079672,2.43010688997043,3.99617426567626,23.9946826899195,20.3199057675484,5.02212276781312,3.45043695665651,11.0306254393203,28.6301290598411,15.4501679083077,16.1286859919056,26.1134849705784,13.3571959659518,25.5247551572812,12.5632349550621,16.3201156909187,17.5717984943332,28.8736013764194,23.3489556510529,26.655120753018,8.02697649331751,12.8471652181535,0.289864488701678,0,0.679971333707751,0,0.649776417447669,0,0.561777680527007,0,0,0,11.4083170019111,0,0,0,1.73192832808971,0.253359865475099,0.505524445014783,1.37020655662872,0.776813650941515,1.63286352971307,7.63335437770998,1.82679286987285,2.7673859670727,1.65794904607885,6.23220147819235,1.13099932196708,0.247194967734374,0.289198713839823,0,2.26473589926373,0.662524555381181,0,0,9.36898550436951,29.7414323675106,1.53274233125155,0,0,0,11.9832511523858,6.8625090422794,7.03664371832041,8.51739168942155,9.46147192122223,12.0517065844545,12.4925772562173,9.47106083807942,1.24406970610093,0.252722758433675,2.52530227063769,17.566259799965,12.8745178482745,9.90341713929421,15.6733010549144,18.2337817725559,18.3202620007335,18.9277483610652,7.24369438069244,9.05385570317937,20.4234566581245,28.8559843628876,12.7133524807993,20.5754964426942,10.0993128291428,8.43706759272568,19.3063238813938,0,0,0.284163499395593,3.93538967817454,6.80125573945179,5.04173772090842,3.55117103377815,3.54175617145327,1.3884040159864,0.697601834251224,0.804820204198858,1.63471479314037,1.48103864922132,1.31333971263276,0.972825714550269,1.16959989940266,1.09775057645525,1.47627060636409,5.46753866266731,4.11618449517138,0,0.264450566663544,10.6644125267617,9.75394021813842,6.05677068213839,3.63030344322017,3.55804870151792,3.23383564391351,2.37264530772256,3.62337700392824,4.02136334080431,2.98434708061726,3.31438948102504,2.69645822596266,1.72910439899755,1.99141273254367,4.93136542478012,9.93962059704641,6.76246414038483,7.33144780243131,6.7883370508669,7.71494018793504,5.56481526693464,1.03327103585722,1.8839847340965,1.35736880313981,0,3.33690211432188,1.17935397067922,1.79889689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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=319387 | |||
|HGNC= | |||
|MCL_coexpression_id=2430 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-375bp_to_ENSMUST00000147226_5end | |||
|cluster_id=chr5:81448759..81448787,+ | |||
|description=CAGE_peak_1_at_Lphn3_5end | |||
|id=chr5:81448759..81448787,+ | |||
|ontology_enrichment_celltype=CL:0000540!7.54e-13!33;CL:0000047!7.54e-13!33;CL:0000031!7.54e-13!33;CL:0000404!7.54e-13!33;CL:0000221!3.27e-12!44;CL:0000133!3.27e-12!44;CL:0002319!7.44e-12!43;CL:0000117!5.95e-10!23;CL:0000337!5.95e-10!23;CL:0000393!7.56e-09!39;CL:0000211!7.56e-09!39;CL:0000055!5.80e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.42e-13,33;CL:0000047,3.42e-13,33;CL:0000031,3.42e-13,33;CL:0000404,3.42e-13,33;CL:0000221,1.55e-12,44;CL:0000133,1.55e-12,44;CL:0002319,3.62e-12,43;CL:0000117,3.30e-10,23;CL:0000337,3.30e-10,23;CL:0000393,1.26e-08,39;CL:0000211,1.26e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.62e-21!102;UBERON:0000924!3.62e-21!102;UBERON:0006601!3.62e-21!102;UBERON:0000073!6.56e-21!75;UBERON:0001016!6.56e-21!75;UBERON:0001017!3.06e-20!73;UBERON:0005743!3.06e-20!73;UBERON:0002346!2.34e-15!71;UBERON:0003075!2.34e-15!71;UBERON:0007284!2.34e-15!71;UBERON:0000033!1.60e-14!63;UBERON:0001049!3.17e-13!52;UBERON:0005068!3.17e-13!52;UBERON:0006241!3.17e-13!52;UBERON:0007135!3.17e-13!52;UBERON:0003056!2.97e-12!49;UBERON:0000955!9.84e-12!50;UBERON:0006238!9.84e-12!50;UBERON:0002616!1.19e-11!49;UBERON:0000468!6.42e-11!333;UBERON:0003080!3.21e-09!40;UBERON:0000922!5.86e-09!328;UBERON:0002780!7.11e-09!39;UBERON:0001890!7.11e-09!39;UBERON:0006240!7.11e-09!39;UBERON:0002020!1.60e-08!34;UBERON:0000153!5.81e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.39e-22,95;UBERON:0000924,2.39e-22,95;UBERON:0006601,2.39e-22,95;UBERON:0001016,1.69e-21,75;UBERON:0001017,8.27e-21,73;UBERON:0002346,5.00e-17,64;UBERON:0003075,5.00e-17,64;UBERON:0007284,5.00e-17,64;UBERON:0010371,1.11e-16,73;UBERON:0000073,5.81e-15,54;UBERON:0001049,1.40e-13,52;UBERON:0005068,1.40e-13,52;UBERON:0006241,1.40e-13,52;UBERON:0007135,1.40e-13,52;UBERON:0003056,1.41e-12,49;UBERON:0010314,6.91e-11,92;UBERON:0000955,1.63e-10,47;UBERON:0006238,1.63e-10,47;UBERON:0002616,1.99e-10,46;UBERON:0003080,1.88e-09,40;UBERON:0002780,4.26e-09,39;UBERON:0001890,4.26e-09,39;UBERON:0006240,4.26e-09,39;UBERON:0002020,9.79e-09,34;UBERON:0000922,4.04e-08,320 | |||
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| |||
|short_description=p1@Lphn3 | |||
}} |
Latest revision as of 06:06, 26 September 2015
Short description: | p1@Lphn3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lphn3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2430 |
Association with transcript: | -375bp_to_ENSMUST00000147226_5end |
EntrezGene: | Lphn3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.42e-13 | 33 |
neuronal stem cell | 3.42e-13 | 33 |
neuroblast | 3.42e-13 | 33 |
electrically signaling cell | 3.42e-13 | 33 |
ectodermal cell | 1.55e-12 | 44 |
neurectodermal cell | 1.55e-12 | 44 |
neural cell | 3.62e-12 | 43 |
CNS neuron (sensu Vertebrata) | 3.30e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.30e-10 | 23 |
electrically responsive cell | 1.26e-08 | 39 |
electrically active cell | 1.26e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.39e-22 | 95 |
ectoderm | 2.39e-22 | 95 |
presumptive ectoderm | 2.39e-22 | 95 |
nervous system | 1.69e-21 | 75 |
central nervous system | 8.27e-21 | 73 |
neurectoderm | 5.00e-17 | 64 |
neural plate | 5.00e-17 | 64 |
presumptive neural plate | 5.00e-17 | 64 |
ecto-epithelium | 1.11e-16 | 73 |
regional part of nervous system | 5.81e-15 | 54 |
neural tube | 1.40e-13 | 52 |
neural rod | 1.40e-13 | 52 |
future spinal cord | 1.40e-13 | 52 |
neural keel | 1.40e-13 | 52 |
pre-chordal neural plate | 1.41e-12 | 49 |
structure with developmental contribution from neural crest | 6.91e-11 | 92 |
brain | 1.63e-10 | 47 |
future brain | 1.63e-10 | 47 |
regional part of brain | 1.99e-10 | 46 |
anterior neural tube | 1.88e-09 | 40 |
regional part of forebrain | 4.26e-09 | 39 |
forebrain | 4.26e-09 | 39 |
future forebrain | 4.26e-09 | 39 |
gray matter | 9.79e-09 | 34 |
embryo | 4.04e-08 | 320 |