FFCP PHASE1:Mm9::chr10:75700567..75700612,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr10:75700567..75700612,- to FFCP PHASE1:Mm9::chr10:75700567..75700612,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=15468 | |EntrezGene=15468 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UKX1,Q3UID4,E9QP78,Q3USQ4 | |UniProt=Q3UKX1,Q3UID4,E9QP78,Q3USQ4 | ||
|association_with_transcript=0bp_to_ENSMUST00000020452,ENSMUST00000099571,ENSMUST00000099572,ENSMUST00000105418,ENSMUST00000128099,ENSMUST00000137857,ENSMUST00000169858,NM_001077638,NM_133182,uc007ftz.1,uc007fua.1,uc007fub.1,uc011xgw.1_5end | |||
|cluster_id=chr10:75700567..75700612,- | |||
|description=CAGE_peak_1_at_Prmt2_5end | |||
|id=chr10:75700567..75700612,- | |||
|ontology_enrichment_celltype=CL:0000221!7.78e-22!44;CL:0000133!7.78e-22!44;CL:0002319!1.91e-21!43;CL:0000055!5.38e-21!50;CL:0000393!2.45e-19!39;CL:0000211!2.45e-19!39;CL:0000540!7.57e-19!33;CL:0000047!7.57e-19!33;CL:0000031!7.57e-19!33;CL:0000404!7.57e-19!33;CL:0000117!5.07e-16!23;CL:0000337!5.07e-16!23;CL:0002321!1.02e-10!70;CL:0000220!1.02e-10!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.77e-22,44;CL:0000133,7.77e-22,44;CL:0002319,1.91e-21,43;CL:0000393,2.45e-19,39;CL:0000211,2.45e-19,39;CL:0000540,7.57e-19,33;CL:0000047,7.57e-19,33;CL:0000031,7.57e-19,33;CL:0000404,7.57e-19,33;CL:0000117,5.07e-16,23;CL:0000337,5.07e-16,23;CL:0002321,9.89e-11,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.84e-35!75;UBERON:0001016!2.84e-35!75;UBERON:0001017!1.81e-34!73;UBERON:0005743!1.81e-34!73;UBERON:0004121!2.94e-28!102;UBERON:0000924!2.94e-28!102;UBERON:0006601!2.94e-28!102;UBERON:0001049!4.01e-24!52;UBERON:0005068!4.01e-24!52;UBERON:0006241!4.01e-24!52;UBERON:0007135!4.01e-24!52;UBERON:0002346!9.26e-24!71;UBERON:0003075!9.26e-24!71;UBERON:0007284!9.26e-24!71;UBERON:0000033!2.04e-22!63;UBERON:0000955!2.76e-22!50;UBERON:0006238!2.76e-22!50;UBERON:0002616!5.16e-22!49;UBERON:0003056!2.34e-20!49;UBERON:0003080!7.18e-20!40;UBERON:0002780!2.77e-19!39;UBERON:0001890!2.77e-19!39;UBERON:0006240!2.77e-19!39;UBERON:0002020!2.15e-18!34;UBERON:0002791!4.97e-15!29;UBERON:0003528!4.97e-15!29;UBERON:0001893!4.97e-15!29;UBERON:0000956!4.83e-10!21;UBERON:0001869!4.83e-10!21;UBERON:0000203!4.83e-10!21;UBERON:0007811!4.79e-09!86;UBERON:0000025!6.13e-09!114;UBERON:0004111!2.09e-08!122;UBERON:0000153!2.29e-08!94;UBERON:0002619!5.67e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.84e-35,75;UBERON:0001017,1.81e-34,73;UBERON:0004121,5.06e-30,95;UBERON:0000924,5.06e-30,95;UBERON:0006601,5.06e-30,95;UBERON:0002346,3.67e-26,64;UBERON:0003075,3.67e-26,64;UBERON:0007284,3.67e-26,64;UBERON:0000073,1.38e-25,54;UBERON:0001049,4.01e-24,52;UBERON:0005068,4.01e-24,52;UBERON:0006241,4.01e-24,52;UBERON:0007135,4.01e-24,52;UBERON:0010314,1.05e-21,92;UBERON:0010371,1.21e-21,73;UBERON:0003056,2.33e-20,49;UBERON:0000955,2.53e-20,47;UBERON:0006238,2.53e-20,47;UBERON:0002616,4.68e-20,46;UBERON:0003080,7.17e-20,40;UBERON:0002780,2.76e-19,39;UBERON:0001890,2.76e-19,39;UBERON:0006240,2.76e-19,39;UBERON:0002020,2.15e-18,34;UBERON:0003528,4.97e-15,29;UBERON:0002791,4.97e-15,29;UBERON:0001893,4.97e-15,29;UBERON:0000956,4.83e-10,21;UBERON:0001869,4.83e-10,21;UBERON:0000203,4.83e-10,21;UBERON:0000025,6.16e-09,114;UBERON:0004111,2.10e-08,122;UBERON:0002619,5.67e-08,17;UBERON:0000922,2.36e-07,320 | |||
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| |phase1_expression=30.7485786441204,13.6100408979351,10.9199817453489,13.9133537201142,10.5188103288733,9.56911849897772,5.60670337429262,11.7502224331834,1.54867594366833,1.40438715793196,1.71217968225505,3.35043067780413,7.19043065711064,8.30493822980475,2.33176833270964,3.23960427823721,0,6.46697438984387,7.54129384831563,9.76096199135469,19.474913444595,3.77305614563364,3.6567970479451,13.2793710918528,14.4527847072317,12.0588712464154,12.9228598847722,10.3426191689227,25.4631382071541,15.6258680451157,10.4213340007993,0.635030673459631,2.46025915033828,0,1.73310971850765,1.66234645358492,1.63335485009895,0,0,0,0,1.36609096991689,0.485510353031154,34.6216249432838,35.9888105829277,30.2852141066775,17.2126095756569,24.41881751461,34.7104168720466,33.8308024389253,28.2772571683232,35.9381410912429,5.03347818173209,5.07753499407941,7.73015738027667,20.8380143189117,19.7708073557742,17.532851137433,114.511116846532,124.312880128928,119.794135262668,39.6448102520885,31.1253178638899,22.9474427906757,16.8107281636386,18.4724829885986,28.7616106097669,38.0376122268339,49.6673242957608,67.5029691658453,53.422540183251,85.6952953211411,90.1143647082583,62.8377799972714,73.2259398579326,71.6990653555816,73.7776402695904,56.6931781098233,74.4991686292781,140.195123857196,163.579906761108,135.437476344758,76.7753247253798,93.4185932652589,94.2765188782918,84.8530326164163,93.1110792426133,103.078893541391,29.4574892066086,31.6644836847431,14.4932244350839,3.44169550792555,2.03991400112325,1.07940638327563,0,1.34408066129201,6.88177658645584,33.2339129027213,29.3558185201242,33.213920003972,32.5348299684132,25.6652954828636,15.2883143823987,0,18.4017384859532,17.4818307177818,9.60496445528088,4.79572294820052,6.47344709117929,16.6255195752604,19.2568712710411,13.0920155674221,14.7593918243877,15.8258772580254,12.346814249249,13.8233250462643,22.2475470960936,7.95296463059514,5.30766331169925,13.1031148457401,4.63767188766826,3.39412677194655,14.9113408974498,15.8101630386235,15.2896095973822,10.4737392635522,2.27648736561249,0,1.39777249780371,48.8317484459722,33.3975440057597,65.0889543944638,35.6339856394167,27.872984849006,56.3105600756408,46.7254837635142,15.9887801244997,7.96204611904595,21.734157225296,13.0473950649614,20.4289095451445,34.2554135605875,36.3725502206805,32.5522406525144,20.8872052394576,26.0070852178245,29.1412363380757,14.4873887613849,10.5628316537093,16.4522289746003,16.5394056714112,22.3579647076126,17.2389294519871,18.1091126591527,15.0220959577799,17.1169469463904,2.1066395619397,0.772043721344145,1.42081749697796,18.8484453007307,19.465662978431,22.3276956211658,22.7274946161802,18.6926020160034,22.2144642557825,19.7653853037847,18.5108646965737,14.8291984806305,20.4054213892716,21.8342727225197,10.701082860053,15.3509986796599,12.7339066868809,9.39444931322602,37.6419007929788,65.3444288608456,8.92130714056255,5.02456076660734,21.5421133040586,19.9723537799977,12.6290112095651,11.8993279527772,18.2349995952794,14.0766963323294,7.11793592316767,13.1759163779209,15.3314477368164,12.1363447945102,14.2323783596958,14.3811105384675,11.0230405436094,14.5373129475688,16.1217715810119,20.1077382193123,13.5249282807697,11.6081256871829,12.6069116658957,11.8529535614638,13.6590920188396,8.70899873079653,13.815888050041,9.87177311374404,0.296452627087149,5.5058884886311,4.32429789249047,2.9232074610031,2.84004169943904,2.65294875727659,4.83789118384698,3.74004978686054,1.13494658742525,1.64736847912849,5.75072826109418,4.09355042435354,2.80833905803104,2.52578877947112,1.25578189465339,1.4473305640901,31.777548708656,22.9284608242287,11.5705133273838,15.1073126339917,13.1426539041561,19.2632196058088,23.3282768068293,22.4403695036469,23.960541904141,24.8040452406628,29.1802226643201,32.7726629431476,29.701816880934,31.678143829351,27.142431109069,13.053736411649,7.37646409528554,6.62248191131358,51.3761887960934,48.1740031893955,9.83609672260053,5.55436039849621,28.0802315280468,32.406415776621,40.715022171499,29.1541933502113,29.6322236529584,28.8738061404609,24.2886421004937,34.1939353756235,38.3429144608128,28.9189184779626,18.8780313326997,24.0388564950795,12.2165219515182,17.9817434040064,5.30980553359851,16.7518638946937,14.2092071773433,9.05304382828311,11.8120757152309,11.6825356218692,9.04499026088774,9.08834323693764,9.26893183800275,2.21225730555071,6.32511651449993,7.21948802737308,36.0865982099015,28.8097750450096,31.4341601592093,40.2953625859394,34.7586857938856,37.4574516964348,38.3399218002942,24.9661258273971,27.2219181353904,35.7996199759856,7.93902232997863,8.57408515295696,8.07322133479528,7.96130609051657,7.63983001620073,8.86360858623331,8.74442509889552,39.4955893282386,4.95525554313773,11.144890870014,9.07453184111587,3.39063222608444,3.41735569302563,5.71945433016307,3.22959016988325,3.63873776041511,2.76399947608848,14.3200592702267,16.449471666219,16.8755157715284,16.9568385090228,17.5634168652154,13.7568415160092,10.9240120571705,11.075563067195,12.5642852152334,12.831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| ||
|short_description=p1@Prmt2 | |||
}} | }} |
Latest revision as of 07:29, 26 September 2015
Short description: | p1@Prmt2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Prmt2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000020452, ENSMUST00000099571, ENSMUST00000099572, ENSMUST00000105418, ENSMUST00000128099, ENSMUST00000137857, ENSMUST00000169858, NM_001077638, NM_133182, uc007ftz.1, uc007fua.1, uc007fub.1, uc011xgw.1_5end |
EntrezGene: | Prmt2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.77e-22 | 44 |
neurectodermal cell | 7.77e-22 | 44 |
neural cell | 1.91e-21 | 43 |
electrically responsive cell | 2.45e-19 | 39 |
electrically active cell | 2.45e-19 | 39 |
neuron | 7.57e-19 | 33 |
neuronal stem cell | 7.57e-19 | 33 |
neuroblast | 7.57e-19 | 33 |
electrically signaling cell | 7.57e-19 | 33 |
CNS neuron (sensu Vertebrata) | 5.07e-16 | 23 |
neuroblast (sensu Vertebrata) | 5.07e-16 | 23 |
embryonic cell | 9.89e-11 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.84e-35 | 75 |
central nervous system | 1.81e-34 | 73 |
ectoderm-derived structure | 5.06e-30 | 95 |
ectoderm | 5.06e-30 | 95 |
presumptive ectoderm | 5.06e-30 | 95 |
neurectoderm | 3.67e-26 | 64 |
neural plate | 3.67e-26 | 64 |
presumptive neural plate | 3.67e-26 | 64 |
regional part of nervous system | 1.38e-25 | 54 |
neural tube | 4.01e-24 | 52 |
neural rod | 4.01e-24 | 52 |
future spinal cord | 4.01e-24 | 52 |
neural keel | 4.01e-24 | 52 |
structure with developmental contribution from neural crest | 1.05e-21 | 92 |
ecto-epithelium | 1.21e-21 | 73 |
pre-chordal neural plate | 2.33e-20 | 49 |
brain | 2.53e-20 | 47 |
future brain | 2.53e-20 | 47 |
regional part of brain | 4.68e-20 | 46 |
anterior neural tube | 7.17e-20 | 40 |
regional part of forebrain | 2.76e-19 | 39 |
forebrain | 2.76e-19 | 39 |
future forebrain | 2.76e-19 | 39 |
gray matter | 2.15e-18 | 34 |
brain grey matter | 4.97e-15 | 29 |
regional part of telencephalon | 4.97e-15 | 29 |
telencephalon | 4.97e-15 | 29 |
cerebral cortex | 4.83e-10 | 21 |
cerebral hemisphere | 4.83e-10 | 21 |
pallium | 4.83e-10 | 21 |
tube | 6.16e-09 | 114 |
anatomical conduit | 2.10e-08 | 122 |
regional part of cerebral cortex | 5.67e-08 | 17 |
embryo | 2.36e-07 | 320 |