FFCP PHASE1:Mm9::chr2:20890358..20890371,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr2:20890358..20890371,+ to FFCP PHASE1:Mm9::chr2:20890358..20890371,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=433408 | |EntrezGene=433408 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2852 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-129bp_to_NR_033225,uc012brm.1_5end | |||
|cluster_id=chr2:20890358..20890371,+ | |||
|description=CAGE_peak_3_at_Gm13375_5end | |||
|id=chr2:20890358..20890371,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.77e-16!44;CL:0000133!3.77e-16!44;CL:0002319!4.68e-16!43;CL:0000117!8.65e-14!23;CL:0000337!8.65e-14!23;CL:0000540!5.51e-12!33;CL:0000047!5.51e-12!33;CL:0000031!5.51e-12!33;CL:0000404!5.51e-12!33;CL:0000055!5.97e-12!50;CL:0000393!7.00e-09!39;CL:0000211!7.00e-09!39;CL:0002321!4.52e-08!70;CL:0000220!4.52e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.14e-26,43;CL:0000221,1.98e-25,44;CL:0000133,1.98e-25,44;CL:0000117,2.49e-23,23;CL:0000337,2.49e-23,23;CL:0000540,6.54e-18,33;CL:0000047,6.54e-18,33;CL:0000031,6.54e-18,33;CL:0000404,6.54e-18,33;CL:0002321,7.76e-15,70;CL:0000393,3.52e-14,39;CL:0000211,3.52e-14,39;CL:0002453,5.27e-12,8;CL:0002609,1.46e-10,6;CL:0000333,2.94e-09,10;CL:0000095,2.94e-09,10;CL:0000243,2.94e-09,10;CL:0000123,2.94e-09,10;CL:0000125,2.94e-09,10;CL:0000030,2.94e-09,10;CL:0000339,2.94e-09,10;CL:0000128,7.34e-09,6;CL:0000126,7.34e-09,6;CL:0000127,7.34e-09,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.13e-27!73;UBERON:0005743!5.13e-27!73;UBERON:0000073!1.57e-26!75;UBERON:0001016!1.57e-26!75;UBERON:0004121!8.25e-24!102;UBERON:0000924!8.25e-24!102;UBERON:0006601!8.25e-24!102;UBERON:0002346!1.41e-23!71;UBERON:0003075!1.41e-23!71;UBERON:0007284!1.41e-23!71;UBERON:0000033!1.54e-21!63;UBERON:0001049!8.23e-21!52;UBERON:0005068!8.23e-21!52;UBERON:0006241!8.23e-21!52;UBERON:0007135!8.23e-21!52;UBERON:0000955!2.03e-19!50;UBERON:0006238!2.03e-19!50;UBERON:0002616!6.65e-19!49;UBERON:0003056!1.90e-18!49;UBERON:0003080!9.96e-15!40;UBERON:0002020!1.75e-14!34;UBERON:0002780!3.47e-14!39;UBERON:0001890!3.47e-14!39;UBERON:0006240!3.47e-14!39;UBERON:0002791!8.31e-12!29;UBERON:0003528!8.31e-12!29;UBERON:0001893!8.31e-12!29;UBERON:0000025!3.96e-11!114;UBERON:0007811!1.13e-10!86;UBERON:0004111!3.39e-10!122;UBERON:0000153!4.79e-09!94;UBERON:0000956!3.40e-08!21;UBERON:0001869!3.40e-08!21;UBERON:0000203!3.40e-08!21;UBERON:0003076!6.87e-07!12;UBERON:0003057!6.87e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.69e-33,73;UBERON:0001016,1.53e-31,75;UBERON:0004121,2.58e-29,95;UBERON:0000924,2.58e-29,95;UBERON:0006601,2.58e-29,95;UBERON:0002346,1.60e-27,64;UBERON:0003075,1.60e-27,64;UBERON:0007284,1.60e-27,64;UBERON:0010314,1.96e-24,92;UBERON:0000073,8.83e-24,54;UBERON:0001049,4.12e-23,52;UBERON:0005068,4.12e-23,52;UBERON:0006241,4.12e-23,52;UBERON:0007135,4.12e-23,52;UBERON:0010371,8.68e-23,73;UBERON:0002020,1.11e-19,34;UBERON:0000955,6.48e-19,47;UBERON:0006238,6.48e-19,47;UBERON:0002616,5.88e-18,46;UBERON:0003056,1.78e-16,49;UBERON:0003528,1.27e-15,29;UBERON:0002791,1.27e-15,29;UBERON:0001893,1.27e-15,29;UBERON:0003080,6.86e-14,40;UBERON:0002780,6.31e-13,39;UBERON:0001890,6.31e-13,39;UBERON:0006240,6.31e-13,39;UBERON:0000025,9.49e-11,114;UBERON:0003076,1.07e-10,12;UBERON:0003057,1.07e-10,12;UBERON:0001954,2.09e-10,7;UBERON:0003022,2.09e-10,7;UBERON:0002421,2.09e-10,7;UBERON:0000349,2.09e-10,7;UBERON:0002600,2.09e-10,7;UBERON:0004111,4.62e-10,122;UBERON:0000956,5.89e-10,21;UBERON:0001869,5.89e-10,21;UBERON:0000203,5.89e-10,21;UBERON:0000369,7.67e-09,5;UBERON:0002435,7.67e-09,5;UBERON:0000204,7.67e-09,5;UBERON:0010082,7.67e-09,5;UBERON:0000483,1.61e-08,174;UBERON:0000119,2.74e-08,176;UBERON:0002619,3.30e-07,17;UBERON:0002420,3.63e-07,8;UBERON:0007245,3.63e-07,8;UBERON:0010009,3.63e-07,8;UBERON:0010011,3.63e-07,8;UBERON:0000454,3.63e-07,8 | |||
|phase1_expression=0.480446541314382,0.348975407639361,0,0.60492842261366,1.00179145989269,0,0.467225281191051,0.129123323441576,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.340173160604279,0.0992909512008853,0.522399578277871,0,0.22940928106717,0,0,0,0.190023419456374,0,0.221730510655305,0,0.61506478758457,0,0,0.831173226792462,0.204169356262369,0.418531630736908,0,0,0,0,0,0,0.202753862439029,0.367093504323363,1.56478268869608,5.01457859675027,1.97717564461025,1.74986909166855,1.25987779462826,2.87505128729943,0.167782606057736,0,0,0,0.286533439938757,0,4.45096213891115,5.81890077199236,5.70448263155561,0,0,0,0,0,3.29560121570245,7.68436610643109,2.17748185847803,2.70011876663381,3.57552434297349,1.99955689082663,3.09215957332259,3.42974237801871,5.46319184803947,3.67687514644008,2.20231761998777,2.42605942361857,0.768032666281217,4.3522474950964,5.30628332893976,2.6045668527838,0.558365998002762,0.56276261003168,1.68078072554491,0.883885756421003,1.70846016958924,2.98239113320481,0.075726193333184,0.604572480854284,0.289864488701678,0,0,0,0,0.448026887097336,0.140444420131752,0.170430322578058,0.259786004602869,0.70667914902068,0.563373679106722,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0,0.22836775943812,0,0.29688427812965,0.693941307064543,0.304465478312141,0,0.301445281105245,0.352766121407114,0.628332956648377,0.494389935468748,0.289198713839823,0,0.323533699894818,0.220841518460394,0.484875253135222,0,1.17112318804619,0.628340120440365,1.02182822083437,0,0,0.254140454146129,1.9472783122627,2.28750301409313,2.1361239859187,0.869121600961382,1.02286182932132,1.66230435647648,0.486723789203273,0.407357455401265,0.124406970610093,0.505445516867349,0.841767423545896,1.69156575851515,1.60931473103431,1.26043490863744,0.753524089178575,2.04109497453984,0.768682321709099,1.3118241438362,0.776110112217047,0.215567992932842,0.378212160335639,0.175951124163949,0.219195732427575,0.278047249225598,0,0.205782136407943,0.398068533636986,0,0,0,1.24275463521301,0.703578179943289,0.900310307305074,0.473489471170421,0.196764231747404,0.308534225774757,0.465067889500816,0,1.05088808130453,1.15191894939436,0.820837320395476,2.59420190546738,1.31579988682799,1.75640092232841,2.01309628140558,1.47202963994889,1.13195073617213,0,0,0.426576501070468,0.232236671860439,0.128867461322093,0.201683524623343,0.22237804384487,0.760902504450237,0.474529061544512,0.164698954724011,0.251335208800269,0.397912944082302,0.974820435595601,0.898819408654221,0,0,0.758671603812327,0.228497025219458,0,0.407302655690628,0.387904974335251,0.561086559122548,0.379419222745544,0,0.156998727841375,0.616985819609003,0.296452627087149,0,0,0.674586337154561,0,0.241177159752417,0.25462585178142,0.287696137450811,0.972811360650212,0.274561413188081,0,0,0,0,0.179397413521912,0,0.369506380333209,0.947457058852424,0.325929952884052,0.169745085775188,0.234690248288502,0.167506257441816,0,0.195133647857799,0,0,0.637819074629948,0.655453258862952,0.518054945597687,0.867894351489069,0,0,0,0,1.12385412991454,1.05490517932983,0,0.504941854408746,1.26203287766503,0,2.15423397732799,0.238968797952552,0.668396022247182,0.283076530788832,0,0.876767573733936,0.395287777946524,1.60660658210904,0,0.35613120733451,0.81443479676788,0.329940245945071,0,0.242780636154981,0,0,0,0.614870295887855,0.516856586336442,0.727067458955011,0,0.316036757935816,0,0,0.340439605753788,0.720244376125241,0.776152102696527,0.857348140126369,0.886701168211368,0.713475270408282,0.658196082408484,2.13125464380219,0.23467170806371,0.21183207086382,0,0.16488625294148,0,0.361877549568935,0,0,0,2.03967832211561,0,0,0,0.376736914009382,0.136694227721025,0.228778173206523,0.169978429993855,0.279902904647316,0.138199973804424,0,0.790839983952838,0.406638934253697,0.108005340821801,0,0.436725127492355,0.134864346384821,0.41326727862668,0,0.518459893167171,0,0,0.149516546043979,0.66183396182839,0,0.129159823477731,0.337912250981556,0.704143431874524,0.39061315453185,0.314578033277133,0,0,0,0.608175645870493,0.308132871494482,0.129920822977795,0.179026695667481,0.39736270956253,0,0,0,0.15241361331,0,0.0974578807397524,0,0.233753804363138,0,0,0.0897138566094757,0,0.19318959403219,0,0.183151624267265,0.214368379079066,1.00314420807073,1.6942555278512,0.460325236507177,0.572895513439397,0.515559547031063,0.685082519770642,0.755393897389701,0.675022500231806,1.80128481289688,1.81256963593682,0,0.830298780673413,1.99512436700516,0.682934423016537,0,0,0.183843508450014,0.44449345560323,0,0.64183841918363,0.505394423527595,0.760437899670719,0.188626341386076,0.280924522409647,0.320125762024346,0.229741875822453,0,0.347652977834566,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0.354951612318675,0.715308569841963,0.581385666529314,0.752875043322645,0.25384382367503,0,0.526139422875686,0.271608227691724,0.561142271657738,0.355905054372522,0.492522411877817,0.409231043169689,0.309873682371932,0.578719832943424,0.999242311751784,0,0.859484216193193,0,0.441182838239031,0 | |phase1_expression=0.480446541314382,0.348975407639361,0,0.60492842261366,1.00179145989269,0,0.467225281191051,0.129123323441576,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.340173160604279,0.0992909512008853,0.522399578277871,0,0.22940928106717,0,0,0,0.190023419456374,0,0.221730510655305,0,0.61506478758457,0,0,0.831173226792462,0.204169356262369,0.418531630736908,0,0,0,0,0,0,0.202753862439029,0.367093504323363,1.56478268869608,5.01457859675027,1.97717564461025,1.74986909166855,1.25987779462826,2.87505128729943,0.167782606057736,0,0,0,0.286533439938757,0,4.45096213891115,5.81890077199236,5.70448263155561,0,0,0,0,0,3.29560121570245,7.68436610643109,2.17748185847803,2.70011876663381,3.57552434297349,1.99955689082663,3.09215957332259,3.42974237801871,5.46319184803947,3.67687514644008,2.20231761998777,2.42605942361857,0.768032666281217,4.3522474950964,5.30628332893976,2.6045668527838,0.558365998002762,0.56276261003168,1.68078072554491,0.883885756421003,1.70846016958924,2.98239113320481,0.075726193333184,0.604572480854284,0.289864488701678,0,0,0,0,0.448026887097336,0.140444420131752,0.170430322578058,0.259786004602869,0.70667914902068,0.563373679106722,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0,0.22836775943812,0,0.29688427812965,0.693941307064543,0.304465478312141,0,0.301445281105245,0.352766121407114,0.628332956648377,0.494389935468748,0.289198713839823,0,0.323533699894818,0.220841518460394,0.484875253135222,0,1.17112318804619,0.628340120440365,1.02182822083437,0,0,0.254140454146129,1.9472783122627,2.28750301409313,2.1361239859187,0.869121600961382,1.02286182932132,1.66230435647648,0.486723789203273,0.407357455401265,0.124406970610093,0.505445516867349,0.841767423545896,1.69156575851515,1.60931473103431,1.26043490863744,0.753524089178575,2.04109497453984,0.768682321709099,1.3118241438362,0.776110112217047,0.215567992932842,0.378212160335639,0.175951124163949,0.219195732427575,0.278047249225598,0,0.205782136407943,0.398068533636986,0,0,0,1.24275463521301,0.703578179943289,0.900310307305074,0.473489471170421,0.196764231747404,0.308534225774757,0.465067889500816,0,1.05088808130453,1.15191894939436,0.820837320395476,2.59420190546738,1.31579988682799,1.75640092232841,2.01309628140558,1.47202963994889,1.13195073617213,0,0,0.426576501070468,0.232236671860439,0.128867461322093,0.201683524623343,0.22237804384487,0.760902504450237,0.474529061544512,0.164698954724011,0.251335208800269,0.397912944082302,0.974820435595601,0.898819408654221,0,0,0.758671603812327,0.228497025219458,0,0.407302655690628,0.387904974335251,0.561086559122548,0.379419222745544,0,0.156998727841375,0.616985819609003,0.296452627087149,0,0,0.674586337154561,0,0.241177159752417,0.25462585178142,0.287696137450811,0.972811360650212,0.274561413188081,0,0,0,0,0.179397413521912,0,0.369506380333209,0.947457058852424,0.325929952884052,0.169745085775188,0.234690248288502,0.167506257441816,0,0.195133647857799,0,0,0.637819074629948,0.655453258862952,0.518054945597687,0.867894351489069,0,0,0,0,1.12385412991454,1.05490517932983,0,0.504941854408746,1.26203287766503,0,2.15423397732799,0.238968797952552,0.668396022247182,0.283076530788832,0,0.876767573733936,0.395287777946524,1.60660658210904,0,0.35613120733451,0.81443479676788,0.329940245945071,0,0.242780636154981,0,0,0,0.614870295887855,0.516856586336442,0.727067458955011,0,0.316036757935816,0,0,0.340439605753788,0.720244376125241,0.776152102696527,0.857348140126369,0.886701168211368,0.713475270408282,0.658196082408484,2.13125464380219,0.23467170806371,0.21183207086382,0,0.16488625294148,0,0.361877549568935,0,0,0,2.03967832211561,0,0,0,0.376736914009382,0.136694227721025,0.228778173206523,0.169978429993855,0.279902904647316,0.138199973804424,0,0.790839983952838,0.406638934253697,0.108005340821801,0,0.436725127492355,0.134864346384821,0.41326727862668,0,0.518459893167171,0,0,0.149516546043979,0.66183396182839,0,0.129159823477731,0.337912250981556,0.704143431874524,0.39061315453185,0.314578033277133,0,0,0,0.608175645870493,0.308132871494482,0.129920822977795,0.179026695667481,0.39736270956253,0,0,0,0.15241361331,0,0.0974578807397524,0,0.233753804363138,0,0,0.0897138566094757,0,0.19318959403219,0,0.183151624267265,0.214368379079066,1.00314420807073,1.6942555278512,0.460325236507177,0.572895513439397,0.515559547031063,0.685082519770642,0.755393897389701,0.675022500231806,1.80128481289688,1.81256963593682,0,0.830298780673413,1.99512436700516,0.682934423016537,0,0,0.183843508450014,0.44449345560323,0,0.64183841918363,0.505394423527595,0.760437899670719,0.188626341386076,0.280924522409647,0.320125762024346,0.229741875822453,0,0.347652977834566,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0.354951612318675,0.715308569841963,0.581385666529314,0.752875043322645,0.25384382367503,0,0.526139422875686,0.271608227691724,0.561142271657738,0.355905054372522,0.492522411877817,0.409231043169689,0.309873682371932,0.578719832943424,0.999242311751784,0,0.859484216193193,0,0.441182838239031,0 | ||
|short_description=p3@Gm13375 | |||
}} | }} |
Latest revision as of 08:57, 26 September 2015
Short description: | p3@Gm13375 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gm13375_5end |
Coexpression cluster: | MCL_coexpression_mm9:2852 |
Association with transcript: | -129bp_to_NR_033225, uc012brm.1_5end |
EntrezGene: | Gm13375 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.14e-26 | 43 |
ectodermal cell | 1.98e-25 | 44 |
neurectodermal cell | 1.98e-25 | 44 |
CNS neuron (sensu Vertebrata) | 2.49e-23 | 23 |
neuroblast (sensu Vertebrata) | 2.49e-23 | 23 |
neuron | 6.54e-18 | 33 |
neuronal stem cell | 6.54e-18 | 33 |
neuroblast | 6.54e-18 | 33 |
electrically signaling cell | 6.54e-18 | 33 |
embryonic cell | 7.76e-15 | 70 |
electrically responsive cell | 3.52e-14 | 39 |
electrically active cell | 3.52e-14 | 39 |
oligodendrocyte precursor cell | 5.27e-12 | 8 |
neuron of cerebral cortex | 1.46e-10 | 6 |
migratory neural crest cell | 2.94e-09 | 10 |
neuron associated cell | 2.94e-09 | 10 |
glial cell (sensu Vertebrata) | 2.94e-09 | 10 |
neuron associated cell (sensu Vertebrata) | 2.94e-09 | 10 |
glial cell | 2.94e-09 | 10 |
glioblast | 2.94e-09 | 10 |
glioblast (sensu Vertebrata) | 2.94e-09 | 10 |
oligodendrocyte | 7.34e-09 | 6 |
macroglial cell | 7.34e-09 | 6 |
astrocyte | 7.34e-09 | 6 |