FFCP PHASE1:Mm9::chr7:30089029..30089032,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=29861 | |EntrezGene=29861 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=Q6GTK4,Q9QX66 | |UniProt=Q6GTK4,Q9QX66 | ||
|association_with_transcript=5bp_to_NM_013874,uc009gbo.1_5end | |association_with_transcript=5bp_to_NM_013874,uc009gbo.1_5end | ||
|cluster_id=chr7:30089029..30089032,+ | |||
|description=CAGE_peak_10_at_Dpf1_5end | |description=CAGE_peak_10_at_Dpf1_5end | ||
|id=chr7:30089029..30089032,+ | |id=chr7:30089029..30089032,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.63e-16!23;CL:0000337!2.63e-16!23;CL:0000221!8.83e-12!44;CL:0000133!8.83e-12!44;CL:0000540!2.34e-11!33;CL:0000047!2.34e-11!33;CL:0000031!2.34e-11!33;CL:0000404!2.34e-11!33;CL:0002319!4.85e-11!43;CL:0000393!7.09e-09!39;CL:0000211!7.09e-09!39;CL:0000055!1.02e-08!50;CL:0002609!6.32e-07!6 | |ontology_enrichment_celltype=CL:0000117!2.63e-16!23;CL:0000337!2.63e-16!23;CL:0000221!8.83e-12!44;CL:0000133!8.83e-12!44;CL:0000540!2.34e-11!33;CL:0000047!2.34e-11!33;CL:0000031!2.34e-11!33;CL:0000404!2.34e-11!33;CL:0002319!4.85e-11!43;CL:0000393!7.09e-09!39;CL:0000211!7.09e-09!39;CL:0000055!1.02e-08!50;CL:0002609!6.32e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002611,1.42e-35,2;CL:0000117,8.62e-13,23;CL:0000337,8.62e-13,23;CL:0000540,4.09e-09,33;CL:0000047,4.09e-09,33;CL:0000031,4.09e-09,33;CL:0000404,4.09e-09,33;CL:0000393,8.35e-08,39;CL:0000211,8.35e-08,39;CL:0002613,3.18e-07,3;CL:0002319,3.94e-07,43;CL:0000120,5.46e-07,3;CL:0000221,5.56e-07,44;CL:0000133,5.56e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.57e-19!34;UBERON:0001049!3.81e-14!52;UBERON:0005068!3.81e-14!52;UBERON:0006241!3.81e-14!52;UBERON:0007135!3.81e-14!52;UBERON:0000073!7.98e-14!75;UBERON:0001016!7.98e-14!75;UBERON:0001017!1.87e-13!73;UBERON:0005743!1.87e-13!73;UBERON:0002791!8.68e-13!29;UBERON:0003528!8.68e-13!29;UBERON:0001893!8.68e-13!29;UBERON:0002780!1.20e-10!39;UBERON:0001890!1.20e-10!39;UBERON:0006240!1.20e-10!39;UBERON:0003080!2.99e-10!40;UBERON:0002346!3.47e-10!71;UBERON:0003075!3.47e-10!71;UBERON:0007284!3.47e-10!71;UBERON:0004121!4.33e-10!102;UBERON:0000924!4.33e-10!102;UBERON:0006601!4.33e-10!102;UBERON:0001948!1.98e-09!5;UBERON:0002315!1.98e-09!5;UBERON:0000955!2.10e-09!50;UBERON:0006238!2.10e-09!50;UBERON:0003056!2.72e-09!49;UBERON:0000956!6.67e-09!21;UBERON:0001869!6.67e-09!21;UBERON:0000203!6.67e-09!21;UBERON:0000369!9.19e-09!5;UBERON:0002435!9.19e-09!5;UBERON:0000204!9.19e-09!5;UBERON:0010082!9.19e-09!5;UBERON:0000033!1.18e-08!63;UBERON:0002616!1.53e-08!49;UBERON:0002240!9.77e-08!6;UBERON:0005174!9.77e-08!6;UBERON:0001137!9.77e-08!6 | |ontology_enrichment_uberon=UBERON:0002020!2.57e-19!34;UBERON:0001049!3.81e-14!52;UBERON:0005068!3.81e-14!52;UBERON:0006241!3.81e-14!52;UBERON:0007135!3.81e-14!52;UBERON:0000073!7.98e-14!75;UBERON:0001016!7.98e-14!75;UBERON:0001017!1.87e-13!73;UBERON:0005743!1.87e-13!73;UBERON:0002791!8.68e-13!29;UBERON:0003528!8.68e-13!29;UBERON:0001893!8.68e-13!29;UBERON:0002780!1.20e-10!39;UBERON:0001890!1.20e-10!39;UBERON:0006240!1.20e-10!39;UBERON:0003080!2.99e-10!40;UBERON:0002346!3.47e-10!71;UBERON:0003075!3.47e-10!71;UBERON:0007284!3.47e-10!71;UBERON:0004121!4.33e-10!102;UBERON:0000924!4.33e-10!102;UBERON:0006601!4.33e-10!102;UBERON:0001948!1.98e-09!5;UBERON:0002315!1.98e-09!5;UBERON:0000955!2.10e-09!50;UBERON:0006238!2.10e-09!50;UBERON:0003056!2.72e-09!49;UBERON:0000956!6.67e-09!21;UBERON:0001869!6.67e-09!21;UBERON:0000203!6.67e-09!21;UBERON:0000369!9.19e-09!5;UBERON:0002435!9.19e-09!5;UBERON:0000204!9.19e-09!5;UBERON:0010082!9.19e-09!5;UBERON:0000033!1.18e-08!63;UBERON:0002616!1.53e-08!49;UBERON:0002240!9.77e-08!6;UBERON:0005174!9.77e-08!6;UBERON:0001137!9.77e-08!6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002256,1.42e-35,2;UBERON:0001948,6.06e-15,5;UBERON:0002315,6.06e-15,5;UBERON:0002240,1.24e-12,6;UBERON:0005174,1.24e-12,6;UBERON:0001137,1.24e-12,6;UBERON:0002020,6.61e-09,34;UBERON:0003076,8.26e-07,12;UBERON:0003057,8.26e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0.439372365468944,0,0,0,0,0,0,0,0,0,0.809265843438391,0.528990979272033,1.26766280701236,0,0.889294796111139,0,0,0,0,0,0.311068836925433,0.270011876663381,0,1.42825492201902,1.32521124570968,0.857435594504678,0.287536413054709,0.919218786610021,0,0,0,0.527545150920775,1.82975287204819,0.52091337055676,0,0,0,0.589257170947335,0.854230084794618,0.745597783301202,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0.457500602818626,0.502617408451458,0.173824320192276,0.255715457330331,0.41557608911912,0,0,0,0,0,0,0,0.180062129805349,0,0.136072998302656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0.642642632843614,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0.343706364687375,0,0,1.35004500046361,0,0,0,0.103787347584177,0,0.170733605754134,0,0.209613162627982,0.183843508450014,0,0,0,0,0.25347929989024,0,0.187283014939765,0.0640251524048693,0.114870937911227,0.476293691283074,0,0.192909220463705,0,0.441596760403192,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0.749431733813838,0,0.214871054048298,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0.439372365468944,0,0,0,0,0,0,0,0,0,0.809265843438391,0.528990979272033,1.26766280701236,0,0.889294796111139,0,0,0,0,0,0.311068836925433,0.270011876663381,0,1.42825492201902,1.32521124570968,0.857435594504678,0.287536413054709,0.919218786610021,0,0,0,0.527545150920775,1.82975287204819,0.52091337055676,0,0,0,0.589257170947335,0.854230084794618,0.745597783301202,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0.457500602818626,0.502617408451458,0.173824320192276,0.255715457330331,0.41557608911912,0,0,0,0,0,0,0,0.180062129805349,0,0.136072998302656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0.642642632843614,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0.343706364687375,0,0,1.35004500046361,0,0,0,0.103787347584177,0,0.170733605754134,0,0.209613162627982,0.183843508450014,0,0,0,0,0.25347929989024,0,0.187283014939765,0.0640251524048693,0.114870937911227,0.476293691283074,0,0.192909220463705,0,0.441596760403192,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0.749431733813838,0,0.214871054048298,0,0,0 | ||
|short_description=p10@Dpf1 | |short_description=p10@Dpf1 | ||
}} | }} |
Latest revision as of 13:54, 26 September 2015
Short description: | p10@Dpf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_Dpf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 5bp_to_NM_013874, uc009gbo.1_5end |
EntrezGene: | Dpf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the dorsal spinal cord | 1.42e-35 | 2 |
CNS neuron (sensu Vertebrata) | 8.62e-13 | 23 |
neuroblast (sensu Vertebrata) | 8.62e-13 | 23 |
neuron | 4.09e-09 | 33 |
neuronal stem cell | 4.09e-09 | 33 |
neuroblast | 4.09e-09 | 33 |
electrically signaling cell | 4.09e-09 | 33 |
electrically responsive cell | 8.35e-08 | 39 |
electrically active cell | 8.35e-08 | 39 |
striatum neuron | 3.18e-07 | 3 |
neural cell | 3.94e-07 | 43 |
granule cell | 5.46e-07 | 3 |
ectodermal cell | 5.56e-07 | 44 |
neurectodermal cell | 5.56e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
dorsal horn of spinal cord | 1.42e-35 | 2 |
regional part of spinal cord | 6.06e-15 | 5 |
gray matter of spinal cord | 6.06e-15 | 5 |
spinal cord | 1.24e-12 | 6 |
dorsal region element | 1.24e-12 | 6 |
dorsum | 1.24e-12 | 6 |
gray matter | 6.61e-09 | 34 |
posterior neural tube | 8.26e-07 | 12 |
chordal neural plate | 8.26e-07 | 12 |