FFCP PHASE1:Mm9::chr17:56615885..56615903,-: Difference between revisions
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{{FFCP|EntrezGene=19280|HGNC=|MCL_coexpression_id=108|UniProt=B0V2N1,Q3TQ52|association_with_transcript=0bp_to_ENSMUST00000025037,ENSMUST00000097302,ENSMUST00000113012,ENSMUST00000163594,NM_001252453,NM_001252455,NM_011218,uc008dby.2,uc008dbz.2,uc008dca.2,uc008dcb.2,uc008dcc.2,uc008dcd.2_5end|description=CAGE_peak_3_at_Ptprs_5end|id=chr17:56615885..56615903,-|ontology_enrichment_celltype=CL:0000221!9.21e-18!44;CL:0000133!9.21e-18!44;CL:0002319!1.96e-17!43;CL:0000540!5.97e-15!33;CL:0000047!5.97e-15!33;CL:0000031!5.97e-15!33;CL:0000404!5.97e-15!33;CL:0000055!1.27e-14!50;CL:0000393!5.00e-13!39;CL:0000211!5.00e-13!39;CL:0000117!4.07e-11!23;CL:0000337!4.07e-11!23|ontology_enrichment_celltype_v019_2=CL:0000221,5.51e-18,44;CL:0000133,5.51e-18,44;CL:0002319,1.19e-17,43;CL:0000540,3.90e-15,33;CL:0000047,3.90e-15,33;CL:0000031,3.90e-15,33;CL:0000404,3.90e-15,33;CL:0000393,3.48e-13,39;CL:0000211,3.48e-13,39;CL:0000117,3.01e-11,23;CL:0000337,3.01e-11,23;CL:0002321,6.67e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.69e-26!73;UBERON:0005743!1.69e-26!73;UBERON:0000073!1.30e-25!75;UBERON:0001016!1.30e-25!75;UBERON:0004121!2.83e-24!102;UBERON:0000924!2.83e-24!102;UBERON:0006601!2.83e-24!102;UBERON:0002346!3.32e-21!71;UBERON:0003075!3.32e-21!71;UBERON:0007284!3.32e-21!71;UBERON:0000033!1.01e-17!63;UBERON:0001049!1.77e-17!52;UBERON:0005068!1.77e-17!52;UBERON:0006241!1.77e-17!52;UBERON:0007135!1.77e-17!52;UBERON:0003056!5.63e-16!49;UBERON:0000955!1.09e-14!50;UBERON:0006238!1.09e-14!50;UBERON:0002616!1.78e-14!49;UBERON:0002020!8.59e-13!34;UBERON:0002780!1.31e-12!39;UBERON:0001890!1.31e-12!39;UBERON:0006240!1.31e-12!39;UBERON:0003080!1.35e-12!40;UBERON:0002791!4.63e-10!29;UBERON:0003528!4.63e-10!29;UBERON:0001893!4.63e-10!29;UBERON:0000153!9.64e-10!94;UBERON:0007811!1.35e-08!86;UBERON:0000468!1.81e-08!333;UBERON:0000956!3.40e-08!21;UBERON:0001869!3.40e-08!21;UBERON:0000203!3.40e-08!21;UBERON:0000922!6.80e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.64e-27,73;UBERON:0001016,6.03e-26,75;UBERON:0004121,8.10e-25,95;UBERON:0000924,8.10e-25,95;UBERON:0006601,8.10e-25,95;UBERON:0002346,1.25e-22,64;UBERON:0003075,1.25e-22,64;UBERON:0007284,1.25e-22,64;UBERON:0010371,6.80e-20,73;UBERON:0010314,9.15e-19,92;UBERON:0001049,1.07e-17,52;UBERON:0005068,1.07e-17,52;UBERON:0006241,1.07e-17,52;UBERON:0007135,1.07e-17,52;UBERON:0000073,1.56e-17,54;UBERON:0003056,3.57e-16,49;UBERON:0000955,6.18e-15,47;UBERON:0006238,6.18e-15,47;UBERON:0002616,1.01e-14,46;UBERON:0002020,6.01e-13,34;UBERON:0002780,9.23e-13,39;UBERON:0001890,9.23e-13,39;UBERON:0006240,9.23e-13,39;UBERON:0003080,9.49e-13,40;UBERON:0003528,3.54e-10,29;UBERON:0002791,3.54e-10,29;UBERON:0001893,3.54e-10,29;UBERON:0000956,2.75e-08,21;UBERON:0001869,2.75e-08,21;UBERON:0000203,2.75e-08,21;UBERON:0000922,3.69e-07,320|phase1_expression=9.76907967339243,0,0,0,0,1.17515490338323,1.16806320297763,0.516493293766305,0.281577444303333,0,0.513653904676515,0.319088635981346,0,0,0.666219523631325,0,0,0.630924330716475,0.822686601634433,0,1.9559956734746,3.77305614563364,2.61199789138935,0.47997726838022,0.45881856213434,0,0,0.430942465371778,0,0.252030129759931,0.443461021310609,0,0,0,0.866554859253824,0.166234645358492,0.612508068787107,0.418531630736908,0,0.523523743973798,0,0,0,5.41356317294982,4.46058497365864,4.58866880404204,14.0830441982647,13.7355848519681,6.81027166476863,5.63846707315422,7.97922603264566,12.9377307928474,0.335565212115473,0,0.336093799142464,1.54355661621568,1.71920063963254,3.6097046459421,22.8617600771345,24.8625760257855,23.4517619297286,3.72728985276045,5.33576877666684,9.89889689009539,6.92206453796882,12.0781619540837,16.1784059679939,14.6002956022191,22.8117147078651,22.1409738863973,21.0324961351382,17.7103610330358,11.4851641294839,20.9459266657571,26.8367318851062,24.8189072384706,2.20231761998777,6.89511625660014,6.29786786350598,26.6410301214992,30.9228235376145,19.2737947106001,5.02529398202486,3.37657566019008,7.18151764551008,14.4368006882097,13.3829379951157,17.335148461753,1.28734528666413,3.92972112555285,4.34796733052517,0,0,0,0,0,0.421333260395256,0.340860645156116,0.259786004602869,0.70667914902068,7.88723150749411,3.84979432242953,5.09610479413291,0,4.32982082022428,3.80039798212648,2.52762222507392,0.11418387971906,0.517875767294343,2.9688427812965,5.37804512975021,4.87144765299426,3.92046345335299,3.61734337326294,4.58595957829249,2.76466500925286,0.741584903203122,1.01219549843938,1.76922110389975,4.85300549842228,2.42925670306433,0.969750506270444,0,9.66176630138106,10.4723353406728,1.53274233125155,2.51611761462433,1.79970819298022,1.14363204365758,4.94309110035915,2.74500361691176,19.3507702253811,6.08385120672968,8.18289463457058,4.1557608911912,3.89379031362618,10.7949725681335,2.86136032403214,3.0326731012041,2.52530227063769,11.0602376518298,8.96618207290544,12.9644733459851,13.2620239695429,18.6420007674638,15.5017601544668,20.6143794031403,5.69147415625834,6.6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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19280 | |||
|HGNC= | |||
|MCL_coexpression_id=108 | |||
|TSSclassifier=NA | |||
|UniProt=B0V2N1,Q3TQ52 | |||
|association_with_transcript=0bp_to_ENSMUST00000025037,ENSMUST00000097302,ENSMUST00000113012,ENSMUST00000163594,NM_001252453,NM_001252455,NM_011218,uc008dby.2,uc008dbz.2,uc008dca.2,uc008dcb.2,uc008dcc.2,uc008dcd.2_5end | |||
|cluster_id=chr17:56615885..56615903,- | |||
|description=CAGE_peak_3_at_Ptprs_5end | |||
|id=chr17:56615885..56615903,- | |||
|ontology_enrichment_celltype=CL:0000221!9.21e-18!44;CL:0000133!9.21e-18!44;CL:0002319!1.96e-17!43;CL:0000540!5.97e-15!33;CL:0000047!5.97e-15!33;CL:0000031!5.97e-15!33;CL:0000404!5.97e-15!33;CL:0000055!1.27e-14!50;CL:0000393!5.00e-13!39;CL:0000211!5.00e-13!39;CL:0000117!4.07e-11!23;CL:0000337!4.07e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.51e-18,44;CL:0000133,5.51e-18,44;CL:0002319,1.19e-17,43;CL:0000540,3.90e-15,33;CL:0000047,3.90e-15,33;CL:0000031,3.90e-15,33;CL:0000404,3.90e-15,33;CL:0000393,3.48e-13,39;CL:0000211,3.48e-13,39;CL:0000117,3.01e-11,23;CL:0000337,3.01e-11,23;CL:0002321,6.67e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.69e-26!73;UBERON:0005743!1.69e-26!73;UBERON:0000073!1.30e-25!75;UBERON:0001016!1.30e-25!75;UBERON:0004121!2.83e-24!102;UBERON:0000924!2.83e-24!102;UBERON:0006601!2.83e-24!102;UBERON:0002346!3.32e-21!71;UBERON:0003075!3.32e-21!71;UBERON:0007284!3.32e-21!71;UBERON:0000033!1.01e-17!63;UBERON:0001049!1.77e-17!52;UBERON:0005068!1.77e-17!52;UBERON:0006241!1.77e-17!52;UBERON:0007135!1.77e-17!52;UBERON:0003056!5.63e-16!49;UBERON:0000955!1.09e-14!50;UBERON:0006238!1.09e-14!50;UBERON:0002616!1.78e-14!49;UBERON:0002020!8.59e-13!34;UBERON:0002780!1.31e-12!39;UBERON:0001890!1.31e-12!39;UBERON:0006240!1.31e-12!39;UBERON:0003080!1.35e-12!40;UBERON:0002791!4.63e-10!29;UBERON:0003528!4.63e-10!29;UBERON:0001893!4.63e-10!29;UBERON:0000153!9.64e-10!94;UBERON:0007811!1.35e-08!86;UBERON:0000468!1.81e-08!333;UBERON:0000956!3.40e-08!21;UBERON:0001869!3.40e-08!21;UBERON:0000203!3.40e-08!21;UBERON:0000922!6.80e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.64e-27,73;UBERON:0001016,6.03e-26,75;UBERON:0004121,8.10e-25,95;UBERON:0000924,8.10e-25,95;UBERON:0006601,8.10e-25,95;UBERON:0002346,1.25e-22,64;UBERON:0003075,1.25e-22,64;UBERON:0007284,1.25e-22,64;UBERON:0010371,6.80e-20,73;UBERON:0010314,9.15e-19,92;UBERON:0001049,1.07e-17,52;UBERON:0005068,1.07e-17,52;UBERON:0006241,1.07e-17,52;UBERON:0007135,1.07e-17,52;UBERON:0000073,1.56e-17,54;UBERON:0003056,3.57e-16,49;UBERON:0000955,6.18e-15,47;UBERON:0006238,6.18e-15,47;UBERON:0002616,1.01e-14,46;UBERON:0002020,6.01e-13,34;UBERON:0002780,9.23e-13,39;UBERON:0001890,9.23e-13,39;UBERON:0006240,9.23e-13,39;UBERON:0003080,9.49e-13,40;UBERON:0003528,3.54e-10,29;UBERON:0002791,3.54e-10,29;UBERON:0001893,3.54e-10,29;UBERON:0000956,2.75e-08,21;UBERON:0001869,2.75e-08,21;UBERON:0000203,2.75e-08,21;UBERON:0000922,3.69e-07,320 | |||
|phase1_expression=9.76907967339243,0,0,0,0,1.17515490338323,1.16806320297763,0.516493293766305,0.281577444303333,0,0.513653904676515,0.319088635981346,0,0,0.666219523631325,0,0,0.630924330716475,0.822686601634433,0,1.9559956734746,3.77305614563364,2.61199789138935,0.47997726838022,0.45881856213434,0,0,0.430942465371778,0,0.252030129759931,0.443461021310609,0,0,0,0.866554859253824,0.166234645358492,0.612508068787107,0.418531630736908,0,0.523523743973798,0,0,0,5.41356317294982,4.46058497365864,4.58866880404204,14.0830441982647,13.7355848519681,6.81027166476863,5.63846707315422,7.97922603264566,12.9377307928474,0.335565212115473,0,0.336093799142464,1.54355661621568,1.71920063963254,3.6097046459421,22.8617600771345,24.8625760257855,23.4517619297286,3.72728985276045,5.33576877666684,9.89889689009539,6.92206453796882,12.0781619540837,16.1784059679939,14.6002956022191,22.8117147078651,22.1409738863973,21.0324961351382,17.7103610330358,11.4851641294839,20.9459266657571,26.8367318851062,24.8189072384706,2.20231761998777,6.89511625660014,6.29786786350598,26.6410301214992,30.9228235376145,19.2737947106001,5.02529398202486,3.37657566019008,7.18151764551008,14.4368006882097,13.3829379951157,17.335148461753,1.28734528666413,3.92972112555285,4.34796733052517,0,0,0,0,0,0.421333260395256,0.340860645156116,0.259786004602869,0.70667914902068,7.88723150749411,3.84979432242953,5.09610479413291,0,4.32982082022428,3.80039798212648,2.52762222507392,0.11418387971906,0.517875767294343,2.9688427812965,5.37804512975021,4.87144765299426,3.92046345335299,3.61734337326294,4.58595957829249,2.76466500925286,0.741584903203122,1.01219549843938,1.76922110389975,4.85300549842228,2.42925670306433,0.969750506270444,0,9.66176630138106,10.4723353406728,1.53274233125155,2.51611761462433,1.79970819298022,1.14363204365758,4.94309110035915,2.74500361691176,19.3507702253811,6.08385120672968,8.18289463457058,4.1557608911912,3.89379031362618,10.7949725681335,2.86136032403214,3.0326731012041,2.52530227063769,11.0602376518298,8.96618207290544,12.9644733459851,13.2620239695429,18.6420007674638,15.5017601544668,20.6143794031403,5.69147415625834,6.68260778091811,9.64441008855878,12.4925298156404,8.32943783224784,5.00485048606076,7.3132954969655,4.32142486456681,7.76233640592123,3.51106593656617,1.02939162845886,2.84163499395593,6.21377317606506,4.69052119962192,4.14142741360334,7.57583153872673,7.67380503814875,6.47921874126989,2.55787339225449,6.17028823219124,2.6856028744449,4.77223564749093,2.29834449710733,2.67527071501324,2.19299981137998,0.878200461164203,1.8788898626452,7.14985825118033,19.4489717396848,0,0.264450566663544,9.38468302355029,8.82499353069666,5.7990357594942,3.22693639397348,3.33567065767305,2.28270751335071,0.474529061544512,0.823494773620054,3.01602250560323,1.98956472041151,3.11942539390592,0.898819408654221,0.864552199498777,0.796565093017469,6.82804443431094,8.79713547094912,7.88954149711563,6.31319116320474,7.95205197387266,9.74887896475428,4.67950374719504,0.885660887877613,0.627994911365499,0.370191491765402,0,2.00214126859313,1.57247196090562,0.449724224769707,0.608580364165509,1.20588579876208,1.01850340712568,0.575392274901621,0.324270453550071,0.274561413188081,4.31304619582064,1.11642284300551,0.936113019343682,0.252578877947112,0,0,0.554259570499814,5.11626811780309,7.49638891633319,3.39490171550376,5.16318546234705,5.02518772325447,4.99891645860629,4.29294025287157,7.25121662888479,5.53661724121937,7.01600982092943,2.62181303545181,2.07221978239075,1.88043776155965,4.52373851817817,1.08781136763742,0.983528546038072,1.10374698521893,4.81651769963376,5.04010252346474,3.44263385291018,2.7771801992481,5.99465616890888,11.3227235846025,11.4174400798383,10.9925647058174,10.4715376818725,12.4553673547086,7.2865926301481,7.3063964477828,12.6492088942888,6.74774764485795,2.2710413633323,12.9987890677096,9.77321756121457,5.44401405809367,0,5.34117399540959,3.02323556964751,1.69744571780308,2.65771703592696,3.99665692327106,4.39328098385976,4.72593848320757,3.92147116223193,0.948110273807448,1.05418608574999,1.03135543248187,3.40439605753788,10.0834212657534,11.1248468053169,12.8602221018955,12.4138163549592,11.7723419617367,12.0120785039548,10.3518082698964,0.23467170806371,0,0.441056796109924,1.6488625294148,4.03661066739764,3.19658502119226,3.46179797609096,1.47726809770555,0.291480836629851,5.37733375830478,0.170870880797853,7.22354037871279,2.96311243791539,0.941842285023455,0.410082683163076,1.37266903923914,2.88963330989554,2.79902904647316,1.93479963326193,0,7.11755985557555,6.09958401380546,4.75223499615926,4.18176592028937,3.71216358368502,3.2367443132357,3.14083131756277,1.30877970992015,0.648074866458964,1.24267862617385,0.56369293868419,7.7748603942869,6.783798108741,11.2781689239548,7.62042958518613,6.9272011451219,9.27122185301456,6.64042362704146,3.56521771047417,0.241584120826006,0.288030006257865,1.58005560314089,3.64905387522296,2.97861775777999,2.07873316764472,2.14832034800978,2.78153896693771,1.80293174279953,2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| |||
|short_description=p3@Ptprs | |||
}} |
Latest revision as of 17:13, 26 September 2015
Short description: | p3@Ptprs |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ptprs_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | 0bp_to_ENSMUST00000025037, ENSMUST00000097302, ENSMUST00000113012, ENSMUST00000163594, NM_001252453, NM_001252455, NM_011218, uc008dby.2, uc008dbz.2, uc008dca.2, uc008dcb.2, uc008dcc.2, uc008dcd.2_5end |
EntrezGene: | Ptprs |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.51e-18 | 44 |
neurectodermal cell | 5.51e-18 | 44 |
neural cell | 1.19e-17 | 43 |
neuron | 3.90e-15 | 33 |
neuronal stem cell | 3.90e-15 | 33 |
neuroblast | 3.90e-15 | 33 |
electrically signaling cell | 3.90e-15 | 33 |
electrically responsive cell | 3.48e-13 | 39 |
electrically active cell | 3.48e-13 | 39 |
CNS neuron (sensu Vertebrata) | 3.01e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.01e-11 | 23 |
embryonic cell | 6.67e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.64e-27 | 73 |
nervous system | 6.03e-26 | 75 |
ectoderm-derived structure | 8.10e-25 | 95 |
ectoderm | 8.10e-25 | 95 |
presumptive ectoderm | 8.10e-25 | 95 |
neurectoderm | 1.25e-22 | 64 |
neural plate | 1.25e-22 | 64 |
presumptive neural plate | 1.25e-22 | 64 |
ecto-epithelium | 6.80e-20 | 73 |
structure with developmental contribution from neural crest | 9.15e-19 | 92 |
neural tube | 1.07e-17 | 52 |
neural rod | 1.07e-17 | 52 |
future spinal cord | 1.07e-17 | 52 |
neural keel | 1.07e-17 | 52 |
regional part of nervous system | 1.56e-17 | 54 |
pre-chordal neural plate | 3.57e-16 | 49 |
brain | 6.18e-15 | 47 |
future brain | 6.18e-15 | 47 |
regional part of brain | 1.01e-14 | 46 |
gray matter | 6.01e-13 | 34 |
regional part of forebrain | 9.23e-13 | 39 |
forebrain | 9.23e-13 | 39 |
future forebrain | 9.23e-13 | 39 |
anterior neural tube | 9.49e-13 | 40 |
brain grey matter | 3.54e-10 | 29 |
regional part of telencephalon | 3.54e-10 | 29 |
telencephalon | 3.54e-10 | 29 |
cerebral cortex | 2.75e-08 | 21 |
cerebral hemisphere | 2.75e-08 | 21 |
pallium | 2.75e-08 | 21 |
embryo | 3.69e-07 | 320 |