FFCP PHASE1:Mm9::chr4:149655682..149655742,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:149655682..149655742,+
|short_description=p1@Rere
|description=CAGE_peak_1_at_Rere_5end
|association_with_transcript=-12bp_to_ENSMUST00000105682_5end
|Ent...") |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=68703 | |EntrezGene=68703 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q80TZ9 | |UniProt=Q80TZ9 | ||
|association_with_transcript=-12bp_to_ENSMUST00000105682_5end | |||
|cluster_id=chr4:149655682..149655742,+ | |||
|description=CAGE_peak_1_at_Rere_5end | |||
|id=chr4:149655682..149655742,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.07e-12!33;CL:0000047!1.07e-12!33;CL:0000031!1.07e-12!33;CL:0000404!1.07e-12!33;CL:0000117!1.07e-08!23;CL:0000337!1.07e-08!23;CL:0000393!5.36e-08!39;CL:0000211!5.36e-08!39;CL:0002319!8.24e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.07e-12,33;CL:0000047,1.07e-12,33;CL:0000031,1.07e-12,33;CL:0000404,1.07e-12,33;CL:0000117,1.07e-08,23;CL:0000337,1.07e-08,23;CL:0000393,5.36e-08,39;CL:0000211,5.36e-08,39;CL:0002319,8.24e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.39e-15,95;UBERON:0000924,1.39e-15,95;UBERON:0006601,1.39e-15,95;UBERON:0001017,3.38e-14,73;UBERON:0002346,8.23e-14,64;UBERON:0003075,8.23e-14,64;UBERON:0007284,8.23e-14,64;UBERON:0001016,7.54e-13,75;UBERON:0010371,3.65e-12,73;UBERON:0000922,1.17e-10,320;UBERON:0003056,4.11e-10,49;UBERON:0000073,1.45e-09,54;UBERON:0001049,3.47e-09,52;UBERON:0005068,3.47e-09,52;UBERON:0006241,3.47e-09,52;UBERON:0007135,3.47e-09,52;UBERON:0010314,6.49e-09,92;UBERON:0000955,2.89e-08,47;UBERON:0006238,2.89e-08,47;UBERON:0002616,9.39e-08,46;UBERON:0000479,1.38e-07,349;UBERON:0003080,4.28e-07,40;UBERON:0002780,7.67e-07,39;UBERON:0001890,7.67e-07,39;UBERON:0006240,7.67e-07,39;UBERON:0002020,9.66e-07,34 | |||
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| ||
|short_description=p1@Rere | |||
}} | }} |
Latest revision as of 18:12, 26 September 2015
Short description: | p1@Rere |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rere_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENSMUST00000105682_5end |
EntrezGene: | Rere |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.07e-12 | 33 |
neuronal stem cell | 1.07e-12 | 33 |
neuroblast | 1.07e-12 | 33 |
electrically signaling cell | 1.07e-12 | 33 |
CNS neuron (sensu Vertebrata) | 1.07e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.07e-08 | 23 |
electrically responsive cell | 5.36e-08 | 39 |
electrically active cell | 5.36e-08 | 39 |
neural cell | 8.24e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.39e-15 | 95 |
ectoderm | 1.39e-15 | 95 |
presumptive ectoderm | 1.39e-15 | 95 |
central nervous system | 3.38e-14 | 73 |
neurectoderm | 8.23e-14 | 64 |
neural plate | 8.23e-14 | 64 |
presumptive neural plate | 8.23e-14 | 64 |
nervous system | 7.54e-13 | 75 |
ecto-epithelium | 3.65e-12 | 73 |
embryo | 1.17e-10 | 320 |
pre-chordal neural plate | 4.11e-10 | 49 |
regional part of nervous system | 1.45e-09 | 54 |
neural tube | 3.47e-09 | 52 |
neural rod | 3.47e-09 | 52 |
future spinal cord | 3.47e-09 | 52 |
neural keel | 3.47e-09 | 52 |
structure with developmental contribution from neural crest | 6.49e-09 | 92 |
brain | 2.89e-08 | 47 |
future brain | 2.89e-08 | 47 |
regional part of brain | 9.39e-08 | 46 |
tissue | 1.38e-07 | 349 |
anterior neural tube | 4.28e-07 | 40 |
regional part of forebrain | 7.67e-07 | 39 |
forebrain | 7.67e-07 | 39 |
future forebrain | 7.67e-07 | 39 |
gray matter | 9.66e-07 | 34 |