FFCP PHASE1:Mm9::chr11:102254865..102254876,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=51799 | |EntrezGene=51799 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=O08576 | |UniProt=O08576 | ||
|association_with_transcript=116bp_to_uc007lrq.2,uc007lrr.2_5end | |association_with_transcript=116bp_to_uc007lrq.2,uc007lrr.2_5end | ||
|cluster_id=chr11:102254865..102254876,+ | |||
|description=CAGE_peak_3_at_Rundc3a_5end | |description=CAGE_peak_3_at_Rundc3a_5end | ||
|id=chr11:102254865..102254876,+ | |id=chr11:102254865..102254876,+ | ||
|ontology_enrichment_celltype=CL:0000221!9.98e-15!44;CL:0000133!9.98e-15!44;CL:0002319!1.39e-14!43;CL:0000540!3.70e-14!33;CL:0000047!3.70e-14!33;CL:0000031!3.70e-14!33;CL:0000404!3.70e-14!33;CL:0000055!2.84e-13!50;CL:0000393!4.24e-12!39;CL:0000211!4.24e-12!39;CL:0000117!1.79e-11!23;CL:0000337!1.79e-11!23 | |ontology_enrichment_celltype=CL:0000221!9.98e-15!44;CL:0000133!9.98e-15!44;CL:0002319!1.39e-14!43;CL:0000540!3.70e-14!33;CL:0000047!3.70e-14!33;CL:0000031!3.70e-14!33;CL:0000404!3.70e-14!33;CL:0000055!2.84e-13!50;CL:0000393!4.24e-12!39;CL:0000211!4.24e-12!39;CL:0000117!1.79e-11!23;CL:0000337!1.79e-11!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.47e-16,23;CL:0000337,3.47e-16,23;CL:0000540,2.09e-15,33;CL:0000047,2.09e-15,33;CL:0000031,2.09e-15,33;CL:0000404,2.09e-15,33;CL:0002319,9.16e-13,43;CL:0000221,2.49e-12,44;CL:0000133,2.49e-12,44;CL:0000393,3.97e-12,39;CL:0000211,3.97e-12,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!6.04e-36!71;UBERON:0003075!6.04e-36!71;UBERON:0007284!6.04e-36!71;UBERON:0000073!1.03e-35!75;UBERON:0001016!1.03e-35!75;UBERON:0001017!1.29e-35!73;UBERON:0005743!1.29e-35!73;UBERON:0004121!8.05e-35!102;UBERON:0000924!8.05e-35!102;UBERON:0006601!8.05e-35!102;UBERON:0001049!5.99e-29!52;UBERON:0005068!5.99e-29!52;UBERON:0006241!5.99e-29!52;UBERON:0007135!5.99e-29!52;UBERON:0000955!1.41e-28!50;UBERON:0006238!1.41e-28!50;UBERON:0000033!3.70e-28!63;UBERON:0002616!1.07e-27!49;UBERON:0003056!1.51e-22!49;UBERON:0003080!1.26e-21!40;UBERON:0002780!7.57e-21!39;UBERON:0001890!7.57e-21!39;UBERON:0006240!7.57e-21!39;UBERON:0002020!3.88e-18!34;UBERON:0007811!2.15e-17!86;UBERON:0002791!1.34e-15!29;UBERON:0003528!1.34e-15!29;UBERON:0001893!1.34e-15!29;UBERON:0000153!2.36e-14!94;UBERON:0000956!3.35e-12!21;UBERON:0001869!3.35e-12!21;UBERON:0000203!3.35e-12!21;UBERON:0002619!3.32e-10!17;UBERON:0003076!1.01e-07!12;UBERON:0003057!1.01e-07!12;UBERON:0002021!1.65e-07!10;UBERON:0000411!1.65e-07!10;UBERON:0001950!1.65e-07!10 | |ontology_enrichment_uberon=UBERON:0002346!6.04e-36!71;UBERON:0003075!6.04e-36!71;UBERON:0007284!6.04e-36!71;UBERON:0000073!1.03e-35!75;UBERON:0001016!1.03e-35!75;UBERON:0001017!1.29e-35!73;UBERON:0005743!1.29e-35!73;UBERON:0004121!8.05e-35!102;UBERON:0000924!8.05e-35!102;UBERON:0006601!8.05e-35!102;UBERON:0001049!5.99e-29!52;UBERON:0005068!5.99e-29!52;UBERON:0006241!5.99e-29!52;UBERON:0007135!5.99e-29!52;UBERON:0000955!1.41e-28!50;UBERON:0006238!1.41e-28!50;UBERON:0000033!3.70e-28!63;UBERON:0002616!1.07e-27!49;UBERON:0003056!1.51e-22!49;UBERON:0003080!1.26e-21!40;UBERON:0002780!7.57e-21!39;UBERON:0001890!7.57e-21!39;UBERON:0006240!7.57e-21!39;UBERON:0002020!3.88e-18!34;UBERON:0007811!2.15e-17!86;UBERON:0002791!1.34e-15!29;UBERON:0003528!1.34e-15!29;UBERON:0001893!1.34e-15!29;UBERON:0000153!2.36e-14!94;UBERON:0000956!3.35e-12!21;UBERON:0001869!3.35e-12!21;UBERON:0000203!3.35e-12!21;UBERON:0002619!3.32e-10!17;UBERON:0003076!1.01e-07!12;UBERON:0003057!1.01e-07!12;UBERON:0002021!1.65e-07!10;UBERON:0000411!1.65e-07!10;UBERON:0001950!1.65e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.49e-46,73;UBERON:0001016,3.59e-44,75;UBERON:0000073,5.17e-44,54;UBERON:0001049,6.30e-41,52;UBERON:0005068,6.30e-41,52;UBERON:0006241,6.30e-41,52;UBERON:0007135,6.30e-41,52;UBERON:0000955,1.05e-39,47;UBERON:0006238,1.05e-39,47;UBERON:0002346,2.82e-38,64;UBERON:0003075,2.82e-38,64;UBERON:0007284,2.82e-38,64;UBERON:0002616,5.12e-38,46;UBERON:0004121,3.67e-35,95;UBERON:0000924,3.67e-35,95;UBERON:0006601,3.67e-35,95;UBERON:0010371,4.88e-32,73;UBERON:0003080,5.94e-32,40;UBERON:0002780,1.97e-30,39;UBERON:0001890,1.97e-30,39;UBERON:0006240,1.97e-30,39;UBERON:0010314,6.93e-29,92;UBERON:0003056,7.04e-28,49;UBERON:0002020,2.43e-26,34;UBERON:0003528,8.87e-25,29;UBERON:0002791,8.87e-25,29;UBERON:0001893,8.87e-25,29;UBERON:0000956,7.23e-17,21;UBERON:0001869,7.23e-17,21;UBERON:0000203,7.23e-17,21;UBERON:0002619,1.23e-14,17;UBERON:0002021,4.16e-14,10;UBERON:0000411,4.16e-14,10;UBERON:0001950,4.16e-14,10;UBERON:0000025,1.69e-12,114;UBERON:0004111,5.69e-11,122;UBERON:0002420,4.71e-09,8;UBERON:0007245,4.71e-09,8;UBERON:0010009,4.71e-09,8;UBERON:0010011,4.71e-09,8;UBERON:0000454,4.71e-09,8;UBERON:0003076,5.98e-09,12;UBERON:0003057,5.98e-09,12;UBERON:0011216,6.37e-09,194;UBERON:0002950,2.57e-07,4;UBERON:0001891,2.57e-07,4;UBERON:0009616,2.57e-07,4;UBERON:0010286,2.57e-07,4;UBERON:0004733,8.74e-07,6;UBERON:0004732,8.74e-07,6;UBERON:0002028,8.74e-07,6;UBERON:0007277,8.74e-07,6 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0.671517087647559,0.700837921786577,1.67860320474049,0,0.234064526321993,0,0,0.342401459862411,0,0,0.202475267389826,0,0,0,0,1.27564935226605,0,0,0,0,0,0.430761996159075,0.215471232685889,0,0,0.665191531965914,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.506884656097573,0.367093504323363,1.56478268869608,0.872100625521786,0.878744730937887,0.388859798148567,0,0,0,1.45072428402269,0,0,0,0,1.01158230429799,2.11596391708813,0.633831403506179,0.677689064138264,0,0,0,0,0.599200221036809,1.15265491596466,0.933206510776299,1.35005938331691,1.47227472945967,3.42781181284564,2.87129103237098,1.46988959057945,1.43768206527355,1.83843757322004,1.10115880999389,4.46905683298157,4.14737639791857,1.58263545276233,1.9212405156506,0,4.4669279840221,3.93933827022176,3.81995619442025,0.883885756421003,1.56608848879013,0.745597783301202,0.227178579999552,0.453429360640713,0.289864488701678,0.860423876981386,0,0,0,0,0.421333260395256,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,4.00793775475027,2.08182392119363,0.913396434936424,0.691846491768175,2.86373017049983,1.99900802130698,0.879666139307728,0.494389935468748,0,0,0,0,0,0,5.5628351432194,9.84399522023239,0,0,0,0,4.49371918214468,4.11750542536764,2.51308704225729,4.34560800480691,5.62574006126727,4.77912502486988,5.353961681236,0,0.124406970610093,0,0.210441855886474,0,0.689706313300419,0.360124259610698,1.35634336052144,0.680364991513279,0.640568601424249,0.468508622798644,1.81092359517311,0,0,0.175951124163949,0.219195732427575,0,0,0,0.199034266818493,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.20579897128254,0.720332286654991,0,0,0,0,0.515469845288373,0.605050573870028,0,0.380451252225118,0,0.164698954724011,0.502670417600539,0.397912944082302,0,0,0,0.199141273254367,0.189667900953082,0.342745537829186,0,0,0.193952487167626,0.280543279561274,0.126473074248515,0,0,0.123397163921801,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0.318909537314974,0.327726629431476,0,0,0,0,0,0,2.88991061978026,3.16471553798949,0.491804836130026,0,1.57754109708128,1.17131623288992,0.861693590931196,0,0.668396022247182,1.41538265394416,0.809621403349789,2.04579100537918,0.790575555893047,8.9969968598106,0.425820255624806,0,0.162886959353576,0,0,0.485561272309963,0.604647113929502,0.188605079755898,0.295301892880773,0,0.258428293168221,0.727067458955011,1.78248689192361,0,0,0,5.7874732978144,0.720244376125241,0.646793418913773,1.07168517515796,0.709360934569094,1.24858172321449,1.64549020602121,2.43571959291679,0,0.21183207086382,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0.279902904647316,0.138199973804424,0,0.158167996790568,0.609958401380546,0.108005340821801,0.627264888043406,0,0.404593039154462,0.165306911450672,0.26175594198403,0,0,0,0.299033092087958,0.496375471371293,0.194451188344048,0.129159823477731,0.337912250981556,0.234714477291508,0,0,0,0,0,0,0.102710957164827,0,0,0,0.240390899039938,0,0,0.0762068066549998,0.100826185136841,0.292373642219257,0.288635524920988,0.116876902181569,0,0,0,0,0.19318959403219,0,0.36630324853453,0.214368379079066,0,5.0827665835536,3.68260189205742,1.71868654031819,3.43706364687375,1.37016503954128,3.7769694869485,6.07520250208625,1.35096360967266,3.62513927187364,3.10656187051092,0.207574695168353,0.798049746802062,0,0,0.628839487883947,0.183843508450014,0,0.824140228955577,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.468207537349412,0.128050304809739,0.402048282689293,0.476293691283074,0.231768651889711,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0,0,0.581385666529314,0,0.25384382367503,0.182927972872773,0.263069711437843,0,0.561142271657738,0.474540072496697,0.591026894253381,0.409231043169689,0.309873682371932,0.192906610981141,0.499621155875892,0,0.214871054048298,0.191288332068843,0,0 | |phase1_expression=0.80074423552397,0,0,0,0,0.671517087647559,0.700837921786577,1.67860320474049,0,0.234064526321993,0,0,0.342401459862411,0,0,0.202475267389826,0,0,0,0,1.27564935226605,0,0,0,0,0,0.430761996159075,0.215471232685889,0,0,0.665191531965914,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.506884656097573,0.367093504323363,1.56478268869608,0.872100625521786,0.878744730937887,0.388859798148567,0,0,0,1.45072428402269,0,0,0,0,1.01158230429799,2.11596391708813,0.633831403506179,0.677689064138264,0,0,0,0,0.599200221036809,1.15265491596466,0.933206510776299,1.35005938331691,1.47227472945967,3.42781181284564,2.87129103237098,1.46988959057945,1.43768206527355,1.83843757322004,1.10115880999389,4.46905683298157,4.14737639791857,1.58263545276233,1.9212405156506,0,4.4669279840221,3.93933827022176,3.81995619442025,0.883885756421003,1.56608848879013,0.745597783301202,0.227178579999552,0.453429360640713,0.289864488701678,0.860423876981386,0,0,0,0,0.421333260395256,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,4.00793775475027,2.08182392119363,0.913396434936424,0.691846491768175,2.86373017049983,1.99900802130698,0.879666139307728,0.494389935468748,0,0,0,0,0,0,5.5628351432194,9.84399522023239,0,0,0,0,4.49371918214468,4.11750542536764,2.51308704225729,4.34560800480691,5.62574006126727,4.77912502486988,5.353961681236,0,0.124406970610093,0,0.210441855886474,0,0.689706313300419,0.360124259610698,1.35634336052144,0.680364991513279,0.640568601424249,0.468508622798644,1.81092359517311,0,0,0.175951124163949,0.219195732427575,0,0,0,0.199034266818493,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.20579897128254,0.720332286654991,0,0,0,0,0.515469845288373,0.605050573870028,0,0.380451252225118,0,0.164698954724011,0.502670417600539,0.397912944082302,0,0,0,0.199141273254367,0.189667900953082,0.342745537829186,0,0,0.193952487167626,0.280543279561274,0.126473074248515,0,0,0.123397163921801,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0.318909537314974,0.327726629431476,0,0,0,0,0,0,2.88991061978026,3.16471553798949,0.491804836130026,0,1.57754109708128,1.17131623288992,0.861693590931196,0,0.668396022247182,1.41538265394416,0.809621403349789,2.04579100537918,0.790575555893047,8.9969968598106,0.425820255624806,0,0.162886959353576,0,0,0.485561272309963,0.604647113929502,0.188605079755898,0.295301892880773,0,0.258428293168221,0.727067458955011,1.78248689192361,0,0,0,5.7874732978144,0.720244376125241,0.646793418913773,1.07168517515796,0.709360934569094,1.24858172321449,1.64549020602121,2.43571959291679,0,0.21183207086382,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0.279902904647316,0.138199973804424,0,0.158167996790568,0.609958401380546,0.108005340821801,0.627264888043406,0,0.404593039154462,0.165306911450672,0.26175594198403,0,0,0,0.299033092087958,0.496375471371293,0.194451188344048,0.129159823477731,0.337912250981556,0.234714477291508,0,0,0,0,0,0,0.102710957164827,0,0,0,0.240390899039938,0,0,0.0762068066549998,0.100826185136841,0.292373642219257,0.288635524920988,0.116876902181569,0,0,0,0,0.19318959403219,0,0.36630324853453,0.214368379079066,0,5.0827665835536,3.68260189205742,1.71868654031819,3.43706364687375,1.37016503954128,3.7769694869485,6.07520250208625,1.35096360967266,3.62513927187364,3.10656187051092,0.207574695168353,0.798049746802062,0,0,0.628839487883947,0.183843508450014,0,0.824140228955577,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.468207537349412,0.128050304809739,0.402048282689293,0.476293691283074,0.231768651889711,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0,0,0.581385666529314,0,0.25384382367503,0.182927972872773,0.263069711437843,0,0.561142271657738,0.474540072496697,0.591026894253381,0.409231043169689,0.309873682371932,0.192906610981141,0.499621155875892,0,0.214871054048298,0.191288332068843,0,0 | ||
|short_description=p3@Rundc3a | |short_description=p3@Rundc3a | ||
}} | }} |
Latest revision as of 18:21, 26 September 2015
Short description: | p3@Rundc3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rundc3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 116bp_to_uc007lrq.2, uc007lrr.2_5end |
EntrezGene: | Rundc3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.47e-16 | 23 |
neuroblast (sensu Vertebrata) | 3.47e-16 | 23 |
neuron | 2.09e-15 | 33 |
neuronal stem cell | 2.09e-15 | 33 |
neuroblast | 2.09e-15 | 33 |
electrically signaling cell | 2.09e-15 | 33 |
neural cell | 9.16e-13 | 43 |
ectodermal cell | 2.49e-12 | 44 |
neurectodermal cell | 2.49e-12 | 44 |
electrically responsive cell | 3.97e-12 | 39 |
electrically active cell | 3.97e-12 | 39 |