FFCP PHASE1:Mm9::chr4:48597953..48598006,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=230157 | |EntrezGene=230157 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |MCL_coexpression_id=22 | ||
|TSSclassifier=NA | |||
|UniProt=Q6PFE7 | |UniProt=Q6PFE7 | ||
|association_with_transcript=-39bp_to_ENSMUST00000030032_5end | |association_with_transcript=-39bp_to_ENSMUST00000030032_5end | ||
|cluster_id=chr4:48597953..48598006,+ | |||
|description=CAGE_peak_2_at_Tmeff1_5end | |description=CAGE_peak_2_at_Tmeff1_5end | ||
|id=chr4:48597953..48598006,+ | |id=chr4:48597953..48598006,+ | ||
|ontology_enrichment_celltype=CL:0000117!5.37e-14!23;CL:0000337!5.37e-14!23;CL:0000540!3.24e-13!33;CL:0000047!3.24e-13!33;CL:0000031!3.24e-13!33;CL:0000404!3.24e-13!33;CL:0000393!1.15e-12!39;CL:0000211!1.15e-12!39;CL:0002319!1.79e-09!43;CL:0000221!2.10e-09!44;CL:0000133!2.10e-09!44;CL:0000055!9.91e-09!50 | |ontology_enrichment_celltype=CL:0000117!5.37e-14!23;CL:0000337!5.37e-14!23;CL:0000540!3.24e-13!33;CL:0000047!3.24e-13!33;CL:0000031!3.24e-13!33;CL:0000404!3.24e-13!33;CL:0000393!1.15e-12!39;CL:0000211!1.15e-12!39;CL:0002319!1.79e-09!43;CL:0000221!2.10e-09!44;CL:0000133!2.10e-09!44;CL:0000055!9.91e-09!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.43e-14,23;CL:0000337,3.43e-14,23;CL:0000540,2.12e-13,33;CL:0000047,2.12e-13,33;CL:0000031,2.12e-13,33;CL:0000404,2.12e-13,33;CL:0000393,7.71e-13,39;CL:0000211,7.71e-13,39;CL:0002319,1.34e-09,43;CL:0000221,1.58e-09,44;CL:0000133,1.58e-09,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.17e-18!73;UBERON:0005743!1.17e-18!73;UBERON:0002020!3.63e-18!34;UBERON:0000073!6.40e-18!75;UBERON:0001016!6.40e-18!75;UBERON:0001049!1.18e-16!52;UBERON:0005068!1.18e-16!52;UBERON:0006241!1.18e-16!52;UBERON:0007135!1.18e-16!52;UBERON:0002346!8.72e-16!71;UBERON:0003075!8.72e-16!71;UBERON:0007284!8.72e-16!71;UBERON:0004121!2.97e-15!102;UBERON:0000924!2.97e-15!102;UBERON:0006601!2.97e-15!102;UBERON:0002791!3.48e-15!29;UBERON:0003528!3.48e-15!29;UBERON:0001893!3.48e-15!29;UBERON:0000955!6.41e-15!50;UBERON:0006238!6.41e-15!50;UBERON:0003056!1.17e-14!49;UBERON:0002780!1.22e-14!39;UBERON:0001890!1.22e-14!39;UBERON:0006240!1.22e-14!39;UBERON:0002616!1.30e-14!49;UBERON:0003080!1.54e-14!40;UBERON:0000033!1.10e-13!63;UBERON:0000956!8.44e-11!21;UBERON:0001869!8.44e-11!21;UBERON:0000203!8.44e-11!21;UBERON:0002619!2.71e-08!17;UBERON:0000025!1.66e-07!114;UBERON:0002021!8.49e-07!10;UBERON:0000411!8.49e-07!10;UBERON:0001950!8.49e-07!10 | |ontology_enrichment_uberon=UBERON:0001017!1.17e-18!73;UBERON:0005743!1.17e-18!73;UBERON:0002020!3.63e-18!34;UBERON:0000073!6.40e-18!75;UBERON:0001016!6.40e-18!75;UBERON:0001049!1.18e-16!52;UBERON:0005068!1.18e-16!52;UBERON:0006241!1.18e-16!52;UBERON:0007135!1.18e-16!52;UBERON:0002346!8.72e-16!71;UBERON:0003075!8.72e-16!71;UBERON:0007284!8.72e-16!71;UBERON:0004121!2.97e-15!102;UBERON:0000924!2.97e-15!102;UBERON:0006601!2.97e-15!102;UBERON:0002791!3.48e-15!29;UBERON:0003528!3.48e-15!29;UBERON:0001893!3.48e-15!29;UBERON:0000955!6.41e-15!50;UBERON:0006238!6.41e-15!50;UBERON:0003056!1.17e-14!49;UBERON:0002780!1.22e-14!39;UBERON:0001890!1.22e-14!39;UBERON:0006240!1.22e-14!39;UBERON:0002616!1.30e-14!49;UBERON:0003080!1.54e-14!40;UBERON:0000033!1.10e-13!63;UBERON:0000956!8.44e-11!21;UBERON:0001869!8.44e-11!21;UBERON:0000203!8.44e-11!21;UBERON:0002619!2.71e-08!17;UBERON:0000025!1.66e-07!114;UBERON:0002021!8.49e-07!10;UBERON:0000411!8.49e-07!10;UBERON:0001950!8.49e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.90e-19,73;UBERON:0002020,1.99e-18,34;UBERON:0001016,2.78e-18,75;UBERON:0000073,7.49e-18,54;UBERON:0002346,9.58e-18,64;UBERON:0003075,9.58e-18,64;UBERON:0007284,9.58e-18,64;UBERON:0001049,5.20e-17,52;UBERON:0005068,5.20e-17,52;UBERON:0006241,5.20e-17,52;UBERON:0007135,5.20e-17,52;UBERON:0004121,1.18e-16,95;UBERON:0000924,1.18e-16,95;UBERON:0006601,1.18e-16,95;UBERON:0010371,3.19e-16,73;UBERON:0010314,5.37e-16,92;UBERON:0003528,2.12e-15,29;UBERON:0002791,2.12e-15,29;UBERON:0001893,2.12e-15,29;UBERON:0003056,5.64e-15,49;UBERON:0002780,5.71e-15,39;UBERON:0001890,5.71e-15,39;UBERON:0006240,5.71e-15,39;UBERON:0003080,7.27e-15,40;UBERON:0000955,2.92e-14,47;UBERON:0006238,2.92e-14,47;UBERON:0002616,5.94e-14,46;UBERON:0000956,6.04e-11,21;UBERON:0001869,6.04e-11,21;UBERON:0000203,6.04e-11,21;UBERON:0002619,2.12e-08,17;UBERON:0000025,8.68e-08,114;UBERON:0002021,7.01e-07,10;UBERON:0000411,7.01e-07,10;UBERON:0001950,7.01e-07,10 | |||
|phase1_expression=3.20297694209588,0,0,0,0,1.84667199103079,1.16806320297763,0,0,0,0,0,0,0,0.333109761815663,0,0,0.157731082679119,0.411343300817216,0,4.5072943780067,0,0.261199789138935,0.639969691173627,0.22940928106717,0.57423196411502,1.29228598847722,0.215471232685889,0,0,1.10865255327652,0,0,15.8481681015439,2.02196133825892,2.82598897109437,2.6542016314108,0,0,0,0,0,0,2.7697299954627,2.73717714292689,6.05704282133549,5.47673941043627,4.14247797122848,1.97717564461025,1.55543919259427,3.21968769738334,1.43752564364972,0.167782606057736,0,0,5.91696702882678,6.5902691185914,3.09403255366465,21.0409119293982,17.4567023159771,18.3811107016792,5.42151251310611,3.55717918444456,1.7997994345628,2.96659908770092,5.6838409195688,1.49800055259202,2.68952813725088,23.6412316063329,21.6009501330705,24.3976955167603,14.568200204594,11.4851641294839,19.9660002720375,24.1530586965956,25.7381260250806,6.60695285996332,6.2566795661742,8.1411462625809,14.2437190748609,13.7231465403614,15.6274011167028,10.0505879640497,10.6924895906019,8.40390362772456,13.8475435172624,11.6744778255264,21.063137378259,3.10477392666055,1.73814588245607,1.15945795480671,0,0,0,0,0,0.421333260395256,4.94247935476367,7.27400812888033,4.94675404314476,4.22530259330042,5.13305909657271,7.64415719119937,7.11066703153331,8.44315059943735,8.86759529162845,8.08839112023653,0.34255163915718,0,0.742210695324124,4.68410382268567,5.1759131313064,2.53677046981664,2.86373017049983,3.88042733547826,2.01066546127481,1.97755974187499,3.03658649531814,0,1.7794353494215,0.441683036920787,1.45462575940567,1.86391761218122,1.75668478206928,1.04723353406728,0.255457055208591,0.11981512450592,0,0,4.49371918214468,12.8100168789215,36.1884534085049,11.9938780932671,12.7857728665165,8.10373373782284,9.89671704713322,4.68461073711455,0.373220911830279,0.252722758433675,4.62972082950243,4.68433594665733,8.96618207290544,5.76198815377118,4.9732589885786,5.30684693380357,3.33095672740609,5.43470002446427,2.58703370739016,5.6047678162539,5.10586416453112,5.80638709741031,6.1374805079721,5.28289773528636,4.52727816478817,1.64625709126355,7.76233640592123,0,0,0,6.42089894860056,4.45599513964083,5.76198596675248,5.44512891845984,4.13204886669548,7.86762275725629,4.88321283975857,8.04820204198858,4.55384835231961,4.93679549740441,3.2833492815819,3.16168357228837,2.33919979880532,1.53685080703735,2.28150911892632,13.8791366052324,15.4356918568927,0.330418782983798,0.528901133327089,5.97207101498655,4.41249676534833,5.92790322081629,4.03367049246685,2.2237804384487,2.47293313946327,0.474529061544512,2.14108641141214,1.50801125280162,0.397912944082302,2.14460495831032,1.79763881730844,0.864552199498777,1.99141273254367,3.79335801906163,6.16941968092536,7.88954149711563,3.86937522906097,4.65485969202302,4.83937157243198,1.70738650235495,0.738050739898011,0.627994911365499,0.123397163921801,0,1.00107063429656,1.76903095601883,1.12431056192427,0.202860121388503,0.964708639009667,0,0.287696137450811,0,0.274561413188081,1.43768206527355,0.744281895337007,0,0,0.179397413521912,0,6.46636165583116,6.06372517665551,5.21487924614483,5.7713329163564,4.22442446919304,6.19773152534718,5.2369600994923,7.21994497073856,7.09358148477859,7.30833475840957,10.0456504254217,6.06294264448231,6.21665934717224,4.91806799177139,0,0.54390568381871,3.93411418415229,3.86311444826625,4.97706828962155,7.85318300167761,8.52461715958712,0.757412781613119,8.83423014365519,5.46614242015294,3.44677436372478,4.77937595905104,4.45597348164788,4.52922449262132,4.45291771842384,7.3063964477828,5.13874111330481,6.74774764485795,2.12910127812403,5.87616492101942,7.00413925220377,3.13443233647817,3.98235415019888,3.64170954232472,4.83717691143602,3.01768127609437,2.36241514304618,4.30409207121498,2.32585463851399,2.18120237686503,3.20847640546249,1.8962205476149,2.10837217149998,2.06271086496374,0,4.32146625675145,4.78627129996192,5.5727629108214,5.85222771019503,6.42127743367454,7.56925494769756,1.8267896946876,4.22409074514679,7.83778662196135,1.98475558249466,2.30840754118072,2.26050197374268,2.89502039655148,4.17803204010978,5.25250879184196,0.874442509889552,5.7481843623258,0.341741761595705,4.54051109519089,1.85194527369712,0,0,0,0,0,0,1.90934123603023,4.9032079005076,6.70954241518601,5.40026704109006,5.01811910434725,3.49380101993884,2.69728692769641,3.05817786183743,2.35580347785627,2.07383957266869,0,2.25477175473676,8.82147621659475,11.7475528224539,10.5003641705786,9.81614658430756,8.44780627453891,9.27122185301456,13.8016647934587,19.2941193743308,8.45544422891021,4.32045009386798,0.316011120628178,4.25722952109345,2.56777392912068,0.77952493786677,0.895133478337407,0.993406773906324,0.120195449519969,0.295379054349154,0.302899349844443,0.304827226619999,0.100826185136841,0.0974578807397524,0.192423683280659,0,1.81384306892169,13.0971712490698,9.41995494399495,11.7519231454855,1.9318959403219,0.187682475451182,4.39563898241436,3.00115730710692,0.501572104035363,13.5540442228096,10.1271552031579,11.457910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| ||
|short_description=p2@Tmeff1 | |short_description=p2@Tmeff1 | ||
}} | }} |
Latest revision as of 01:52, 27 September 2015
Short description: | p2@Tmeff1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tmeff1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -39bp_to_ENSMUST00000030032_5end |
EntrezGene: | Tmeff1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.43e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.43e-14 | 23 |
neuron | 2.12e-13 | 33 |
neuronal stem cell | 2.12e-13 | 33 |
neuroblast | 2.12e-13 | 33 |
electrically signaling cell | 2.12e-13 | 33 |
electrically responsive cell | 7.71e-13 | 39 |
electrically active cell | 7.71e-13 | 39 |
neural cell | 1.34e-09 | 43 |
ectodermal cell | 1.58e-09 | 44 |
neurectodermal cell | 1.58e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.90e-19 | 73 |
gray matter | 1.99e-18 | 34 |
nervous system | 2.78e-18 | 75 |
regional part of nervous system | 7.49e-18 | 54 |
neurectoderm | 9.58e-18 | 64 |
neural plate | 9.58e-18 | 64 |
presumptive neural plate | 9.58e-18 | 64 |
neural tube | 5.20e-17 | 52 |
neural rod | 5.20e-17 | 52 |
future spinal cord | 5.20e-17 | 52 |
neural keel | 5.20e-17 | 52 |
ectoderm-derived structure | 1.18e-16 | 95 |
ectoderm | 1.18e-16 | 95 |
presumptive ectoderm | 1.18e-16 | 95 |
ecto-epithelium | 3.19e-16 | 73 |
structure with developmental contribution from neural crest | 5.37e-16 | 92 |
brain grey matter | 2.12e-15 | 29 |
regional part of telencephalon | 2.12e-15 | 29 |
telencephalon | 2.12e-15 | 29 |
pre-chordal neural plate | 5.64e-15 | 49 |
regional part of forebrain | 5.71e-15 | 39 |
forebrain | 5.71e-15 | 39 |
future forebrain | 5.71e-15 | 39 |
anterior neural tube | 7.27e-15 | 40 |
brain | 2.92e-14 | 47 |
future brain | 2.92e-14 | 47 |
regional part of brain | 5.94e-14 | 46 |
cerebral cortex | 6.04e-11 | 21 |
cerebral hemisphere | 6.04e-11 | 21 |
pallium | 6.04e-11 | 21 |
regional part of cerebral cortex | 2.12e-08 | 17 |
tube | 8.68e-08 | 114 |
occipital lobe | 7.01e-07 | 10 |
visual cortex | 7.01e-07 | 10 |
neocortex | 7.01e-07 | 10 |