FFCP PHASE1:Mm9::chr13:24893040..24893053,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=79555 | |EntrezGene=79555 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q99LU8,Q3TVJ4 | |UniProt=Q99LU8,Q3TVJ4 | ||
|association_with_transcript=-472bp_to_ENSMUST00000019276,NM_024473,uc007pwi.1_5end | |association_with_transcript=-472bp_to_ENSMUST00000019276,NM_024473,uc007pwi.1_5end | ||
|cluster_id=chr13:24893040..24893053,+ | |||
|description=CAGE_peak_3_at_BC005537_5end | |description=CAGE_peak_3_at_BC005537_5end | ||
|id=chr13:24893040..24893053,+ | |id=chr13:24893040..24893053,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.63e-13!23;CL:0000337!1.63e-13!23;CL:0000540!3.17e-09!33;CL:0000047!3.17e-09!33;CL:0000031!3.17e-09!33;CL:0000404!3.17e-09!33;CL:0000393!8.20e-08!39;CL:0000211!8.20e-08!39 | |ontology_enrichment_celltype=CL:0000117!1.63e-13!23;CL:0000337!1.63e-13!23;CL:0000540!3.17e-09!33;CL:0000047!3.17e-09!33;CL:0000031!3.17e-09!33;CL:0000404!3.17e-09!33;CL:0000393!8.20e-08!39;CL:0000211!8.20e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.63e-13,23;CL:0000337,1.63e-13,23;CL:0000540,3.17e-09,33;CL:0000047,3.17e-09,33;CL:0000031,3.17e-09,33;CL:0000404,3.17e-09,33;CL:0000393,8.20e-08,39;CL:0000211,8.20e-08,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.85e-18!63;UBERON:0001049!5.55e-18!52;UBERON:0005068!5.55e-18!52;UBERON:0006241!5.55e-18!52;UBERON:0007135!5.55e-18!52;UBERON:0002346!1.44e-17!71;UBERON:0003075!1.44e-17!71;UBERON:0007284!1.44e-17!71;UBERON:0000955!1.75e-17!50;UBERON:0006238!1.75e-17!50;UBERON:0002616!8.21e-17!49;UBERON:0001017!8.62e-17!73;UBERON:0005743!8.62e-17!73;UBERON:0003056!1.13e-16!49;UBERON:0004121!2.03e-16!102;UBERON:0000924!2.03e-16!102;UBERON:0006601!2.03e-16!102;UBERON:0000073!1.54e-15!75;UBERON:0001016!1.54e-15!75;UBERON:0003080!2.76e-15!40;UBERON:0002020!3.92e-15!34;UBERON:0002780!7.22e-15!39;UBERON:0001890!7.22e-15!39;UBERON:0006240!7.22e-15!39;UBERON:0007811!5.21e-14!86;UBERON:0000153!1.93e-13!94;UBERON:0002791!1.91e-12!29;UBERON:0003528!1.91e-12!29;UBERON:0001893!1.91e-12!29;UBERON:0000956!3.36e-08!21;UBERON:0001869!3.36e-08!21;UBERON:0000203!3.36e-08!21 | |ontology_enrichment_uberon=UBERON:0000033!3.85e-18!63;UBERON:0001049!5.55e-18!52;UBERON:0005068!5.55e-18!52;UBERON:0006241!5.55e-18!52;UBERON:0007135!5.55e-18!52;UBERON:0002346!1.44e-17!71;UBERON:0003075!1.44e-17!71;UBERON:0007284!1.44e-17!71;UBERON:0000955!1.75e-17!50;UBERON:0006238!1.75e-17!50;UBERON:0002616!8.21e-17!49;UBERON:0001017!8.62e-17!73;UBERON:0005743!8.62e-17!73;UBERON:0003056!1.13e-16!49;UBERON:0004121!2.03e-16!102;UBERON:0000924!2.03e-16!102;UBERON:0006601!2.03e-16!102;UBERON:0000073!1.54e-15!75;UBERON:0001016!1.54e-15!75;UBERON:0003080!2.76e-15!40;UBERON:0002020!3.92e-15!34;UBERON:0002780!7.22e-15!39;UBERON:0001890!7.22e-15!39;UBERON:0006240!7.22e-15!39;UBERON:0007811!5.21e-14!86;UBERON:0000153!1.93e-13!94;UBERON:0002791!1.91e-12!29;UBERON:0003528!1.91e-12!29;UBERON:0001893!1.91e-12!29;UBERON:0000956!3.36e-08!21;UBERON:0001869!3.36e-08!21;UBERON:0000203!3.36e-08!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.29e-19,54;UBERON:0001049,5.55e-18,52;UBERON:0005068,5.55e-18,52;UBERON:0006241,5.55e-18,52;UBERON:0007135,5.55e-18,52;UBERON:0002346,7.22e-18,64;UBERON:0003075,7.22e-18,64;UBERON:0007284,7.22e-18,64;UBERON:0010371,9.89e-18,73;UBERON:0001017,8.62e-17,73;UBERON:0003056,1.13e-16,49;UBERON:0004121,2.89e-16,95;UBERON:0000924,2.89e-16,95;UBERON:0006601,2.89e-16,95;UBERON:0000955,8.02e-16,47;UBERON:0006238,8.02e-16,47;UBERON:0001016,1.54e-15,75;UBERON:0003080,2.76e-15,40;UBERON:0002616,3.61e-15,46;UBERON:0002020,3.92e-15,34;UBERON:0002780,7.22e-15,39;UBERON:0001890,7.22e-15,39;UBERON:0006240,7.22e-15,39;UBERON:0010314,8.71e-14,92;UBERON:0003528,1.91e-12,29;UBERON:0002791,1.91e-12,29;UBERON:0001893,1.91e-12,29;UBERON:0000956,3.36e-08,21;UBERON:0001869,3.36e-08,21;UBERON:0000203,3.36e-08,21 | |||
|phase1_expression=11.2104192973356,4.53668029931169,8.18998630901165,2.41971369045464,4.00716583957078,5.37213670118047,3.27057696833736,12.9123323441576,6.05391505252167,5.85161315804984,2.73948749160808,3.74929147278081,11.641649635322,11.8891747289836,8.66085380720723,8.30148596298286,16.0899231969474,6.46697438984387,10.1464680868247,11.4585205985468,10.2051948181284,5.26242041364692,0.783599367416806,5.11975752938901,4.12936705920906,4.01962374880514,5.1691439539089,5.17130958446134,4.3705386474966,5.29263272495855,5.09980174507201,1.27006134691926,4.30545351309199,0,4.33277429626912,2.1610503896604,3.47087905646027,7.11503772252743,5.4693474116666,2.09409497589519,8.2352408324342,5.46436387966757,7.2826552954673,7.80560271448579,8.51566222243922,3.30384153891027,4.69434806608824,4.14247797122848,4.17403747195497,4.6663175777828,3.77963338388479,1.43752564364972,7.04686945442493,7.25362142011344,6.72187598284928,6.68874533693462,9.16907007804022,5.15672092277442,21.2432283902578,16.398720357433,10.775133859605,1.0165335962074,0.889294796111139,3.1496490104849,5.93319817540185,4.2628806896766,8.08920298399693,7.68436610643109,15.1386833970377,18.6308194897733,19.3498964443271,11.9973413449598,16.3442720304194,19.2310554767478,15.814502718009,15.6267193723704,27.5289702498472,17.6208526557559,11.6740965274745,27.1685752724199,21.5910838901687,23.962015045611,14.5175159480718,11.8180148106653,14.9742282821274,20.6240009831567,14.2371680799103,19.7583412574819,4.84647637332378,4.23200736597999,6.95674772884027,0,3.39985666853875,3.2382191498269,0,3.13618820968135,6.60088774619234,8.52151612890289,8.05336614268893,6.00677276667578,12.3942209403479,15.3991772897181,15.2883143823987,28.4426681261332,3.68034769719064,3.80039798212648,3.0331466700887,7.19358442230078,11.3932668804756,8.46120192669501,7.45986905094384,7.00270600117925,5.99600292865752,6.93324146542064,12.5819916635204,8.92232798440696,8.89901883843746,6.2177723475562,2.65383165584962,10.5148452465816,6.40440403535141,6.78825354389311,7.45567044872489,13.4679166625312,19.2690970268379,4.34276993854605,4.07371423320129,1.19980546198682,3.17675567682662,12.7322043494099,14.1825186873774,21.7382029155255,18.7730265807659,18.9229438424445,15.584103341967,16.2241263067758,12.4244023897386,9.70374370758726,7.58168275301024,15.3622554797126,5.98554037628437,3.67843367093557,10.2635413989049,9.49440352365005,15.3762488082001,12.5551445879153,13.493048336601,18.6266426932091,4.31135985865684,6.05139456537022,6.51019159406611,7.89104636739269,6.67313398141435,7.66154766348766,9.26019613835746,5.37392520409932,0.702213187313235,1.80143534980301,3.40996199274711,2.69263504296152,5.39409937956521,6.48223421259654,6.8655973319711,5.70616272067471,9.87309522479221,5.8133486187602,4.82892122519315,9.45799273174073,7.5697530960201,7.55170334763838,8.91756905004413,5.70179950958796,6.36695334344047,5.90508242545636,15.9820360908737,25.4174392576833,5.28670052774077,4.49565963328025,5.75878276445132,5.80591679651096,5.92790322081629,5.84882221407693,4.22518283305254,3.23383564391351,5.21981967698963,3.62337700392824,5.27803938480566,8.75408476981064,6.04388670069272,8.98819408654222,4.32276099749388,6.57166201739412,7.58671603812327,5.1411830674378,6.76246414038483,6.51684249105006,5.62462212786115,7.85521182771568,6.76630947229553,4.13308414342886,5.18095801876537,6.91024117962083,1.48226313543574,7.00749444007595,6.87956482896211,4.94696647246678,8.31726497692862,5.06472035480075,5.0925170356284,7.76779571117189,15.4028465436284,2.19649130550465,10.0637744569148,5.58211421502755,3.43241440426017,2.02063102357689,3.04975602987251,2.41221760681684,6.28160846566456,6.44270800019648,5.86673915191293,7.29903868833309,8.21415869009757,5.86271901046355,6.18913466303636,8.58588050574315,6.30540576424764,10.85176979279,7.97273843287435,8.52089236521838,6.73471429276993,8.53429445630918,3.01582567878545,6.52686820582452,1.47529281905711,4.13905119457099,9.63303539926752,11.8383803458125,6.22952792431367,6.81671503451807,4.41711507182759,5.0757036758563,6.89354872744957,4.30143836314594,7.35235624471901,9.34152551603147,4.45291771842384,7.59865230569411,7.11518000303742,21.8498495166829,5.67760340833074,8.90328018336276,11.2392001953967,7.4236555337641,15.9294166007955,6.31229654002952,3.32555912661226,4.14931175462976,5.02013217897314,6.14870295887855,8.78656196771952,6.18007340111759,9.62542921638748,5.05658812697306,4.21674434299995,6.18813259489121,17.3624198934432,7.74262704334634,6.46793418913772,11.3598628566744,9.93105308396732,9.63191615051181,13.3284706687718,10.9607381681256,4.22409074514679,8.26145076368899,5.95426674748397,14.8397627647332,12.7556897089765,7.78036731573211,7.5204576721976,8.53532678674319,5.82961673259701,8.71498919449395,8.03093139749908,7.63631411463923,7.77817014952789,9.41842285023455,11.2089266731241,10.9813523139131,7.47905091972963,5.45810664062266,8.01559848065658,4.77335309007557,4.9032079005076,5.69294507955176,7.88438987999149,8.781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|phase1_expression=11.2104192973356,4.53668029931169,8.18998630901165,2.41971369045464,4.00716583957078,5.37213670118047,3.27057696833736,12.9123323441576,6.05391505252167,5.85161315804984,2.73948749160808,3.74929147278081,11.641649635322,11.8891747289836,8.66085380720723,8.30148596298286,16.0899231969474,6.46697438984387,10.1464680868247,11.4585205985468,10.2051948181284,5.26242041364692,0.783599367416806,5.11975752938901,4.12936705920906,4.01962374880514,5.1691439539089,5.17130958446134,4.3705386474966,5.29263272495855,5.09980174507201,1.27006134691926,4.30545351309199,0,4.33277429626912,2.1610503896604,3.47087905646027,7.11503772252743,5.4693474116666,2.09409497589519,8.2352408324342,5.46436387966757,7.2826552954673,7.80560271448579,8.51566222243922,3.30384153891027,4.69434806608824,4.14247797122848,4.17403747195497,4.6663175777828,3.77963338388479,1.43752564364972,7.04686945442493,7.25362142011344,6.72187598284928,6.68874533693462,9.16907007804022,5.15672092277442,21.2432283902578,16.398720357433,10.775133859605,1.0165335962074,0.889294796111139,3.1496490104849,5.93319817540185,4.2628806896766,8.08920298399693,7.68436610643109,15.1386833970377,18.6308194897733,19.3498964443271,11.9973413449598,16.3442720304194,19.2310554767478,15.814502718009,15.6267193723704,27.5289702498472,17.6208526557559,11.6740965274745,27.1685752724199,21.5910838901687,23.962015045611,14.5175159480718,11.8180148106653,14.9742282821274,20.6240009831567,14.2371680799103,19.7583412574819,4.84647637332378,4.23200736597999,6.95674772884027,0,3.39985666853875,3.2382191498269,0,3.13618820968135,6.60088774619234,8.52151612890289,8.05336614268893,6.00677276667578,12.3942209403479,15.3991772897181,15.2883143823987,28.4426681261332,3.68034769719064,3.80039798212648,3.0331466700887,7.19358442230078,11.3932668804756,8.46120192669501,7.45986905094384,7.00270600117925,5.99600292865752,6.93324146542064,12.5819916635204,8.92232798440696,8.89901883843746,6.2177723475562,2.65383165584962,10.5148452465816,6.40440403535141,6.78825354389311,7.45567044872489,13.4679166625312,19.2690970268379,4.34276993854605,4.07371423320129,1.19980546198682,3.17675567682662,12.7322043494099,14.1825186873774,21.7382029155255,18.7730265807659,18.9229438424445,15.584103341967,16.2241263067758,12.4244023897386,9.70374370758726,7.58168275301024,15.3622554797126,5.98554037628437,3.67843367093557,10.2635413989049,9.49440352365005,15.3762488082001,12.5551445879153,13.493048336601,18.6266426932091,4.31135985865684,6.05139456537022,6.51019159406611,7.89104636739269,6.67313398141435,7.66154766348766,9.26019613835746,5.37392520409932,0.702213187313235,1.80143534980301,3.40996199274711,2.69263504296152,5.39409937956521,6.48223421259654,6.8655973319711,5.70616272067471,9.87309522479221,5.8133486187602,4.82892122519315,9.45799273174073,7.5697530960201,7.55170334763838,8.91756905004413,5.70179950958796,6.36695334344047,5.90508242545636,15.9820360908737,25.4174392576833,5.28670052774077,4.49565963328025,5.75878276445132,5.80591679651096,5.92790322081629,5.84882221407693,4.22518283305254,3.23383564391351,5.21981967698963,3.62337700392824,5.27803938480566,8.75408476981064,6.04388670069272,8.98819408654222,4.32276099749388,6.57166201739412,7.58671603812327,5.1411830674378,6.76246414038483,6.51684249105006,5.62462212786115,7.85521182771568,6.76630947229553,4.13308414342886,5.18095801876537,6.91024117962083,1.48226313543574,7.00749444007595,6.87956482896211,4.94696647246678,8.31726497692862,5.06472035480075,5.0925170356284,7.76779571117189,15.4028465436284,2.19649130550465,10.0637744569148,5.58211421502755,3.43241440426017,2.02063102357689,3.04975602987251,2.41221760681684,6.28160846566456,6.44270800019648,5.86673915191293,7.29903868833309,8.21415869009757,5.86271901046355,6.18913466303636,8.58588050574315,6.30540576424764,10.85176979279,7.97273843287435,8.52089236521838,6.73471429276993,8.53429445630918,3.01582567878545,6.52686820582452,1.47529281905711,4.13905119457099,9.63303539926752,11.8383803458125,6.22952792431367,6.81671503451807,4.41711507182759,5.0757036758563,6.89354872744957,4.30143836314594,7.35235624471901,9.34152551603147,4.45291771842384,7.59865230569411,7.11518000303742,21.8498495166829,5.67760340833074,8.90328018336276,11.2392001953967,7.4236555337641,15.9294166007955,6.31229654002952,3.32555912661226,4.14931175462976,5.02013217897314,6.14870295887855,8.78656196771952,6.18007340111759,9.62542921638748,5.05658812697306,4.21674434299995,6.18813259489121,17.3624198934432,7.74262704334634,6.46793418913772,11.3598628566744,9.93105308396732,9.63191615051181,13.3284706687718,10.9607381681256,4.22409074514679,8.26145076368899,5.95426674748397,14.8397627647332,12.7556897089765,7.78036731573211,7.5204576721976,8.53532678674319,5.82961673259701,8.71498919449395,8.03093139749908,7.63631411463923,7.77817014952789,9.41842285023455,11.2089266731241,10.9813523139131,7.47905091972963,5.45810664062266,8.01559848065658,4.77335309007557,4.9032079005076,5.69294507955176,7.88438987999149,8.781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| ||
|short_description=p3@BC005537 | |short_description=p3@BC005537 | ||
}} | }} |
Latest revision as of 07:55, 27 September 2015
Short description: | p3@BC005537 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_BC005537_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -472bp_to_ENSMUST00000019276, NM_024473, uc007pwi.1_5end |
EntrezGene: | BC005537 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.63e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.63e-13 | 23 |
neuron | 3.17e-09 | 33 |
neuronal stem cell | 3.17e-09 | 33 |
neuroblast | 3.17e-09 | 33 |
electrically signaling cell | 3.17e-09 | 33 |
electrically responsive cell | 8.20e-08 | 39 |
electrically active cell | 8.20e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.29e-19 | 54 |
neural tube | 5.55e-18 | 52 |
neural rod | 5.55e-18 | 52 |
future spinal cord | 5.55e-18 | 52 |
neural keel | 5.55e-18 | 52 |
neurectoderm | 7.22e-18 | 64 |
neural plate | 7.22e-18 | 64 |
presumptive neural plate | 7.22e-18 | 64 |
ecto-epithelium | 9.89e-18 | 73 |
central nervous system | 8.62e-17 | 73 |
pre-chordal neural plate | 1.13e-16 | 49 |
ectoderm-derived structure | 2.89e-16 | 95 |
ectoderm | 2.89e-16 | 95 |
presumptive ectoderm | 2.89e-16 | 95 |
brain | 8.02e-16 | 47 |
future brain | 8.02e-16 | 47 |
nervous system | 1.54e-15 | 75 |
anterior neural tube | 2.76e-15 | 40 |
regional part of brain | 3.61e-15 | 46 |
gray matter | 3.92e-15 | 34 |
regional part of forebrain | 7.22e-15 | 39 |
forebrain | 7.22e-15 | 39 |
future forebrain | 7.22e-15 | 39 |
structure with developmental contribution from neural crest | 8.71e-14 | 92 |
brain grey matter | 1.91e-12 | 29 |
regional part of telencephalon | 1.91e-12 | 29 |
telencephalon | 1.91e-12 | 29 |
cerebral cortex | 3.36e-08 | 21 |
cerebral hemisphere | 3.36e-08 | 21 |
pallium | 3.36e-08 | 21 |