FFCP PHASE1:Mm9::chr13:41345245..41345319,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=108934 | |EntrezGene=108934 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |MCL_coexpression_id=60 | ||
|TSSclassifier=NA | |||
|UniProt=E9Q942 | |UniProt=E9Q942 | ||
|association_with_transcript=16bp_to_ENSMUST00000165561_5end | |association_with_transcript=16bp_to_ENSMUST00000165561_5end | ||
|cluster_id=chr13:41345245..41345319,+ | |||
|description=CAGE_peak_3_at_BC024659_5end | |description=CAGE_peak_3_at_BC024659_5end | ||
|id=chr13:41345245..41345319,+ | |id=chr13:41345245..41345319,+ | ||
|ontology_enrichment_celltype=CL:0000540!5.06e-12!33;CL:0000047!5.06e-12!33;CL:0000031!5.06e-12!33;CL:0000404!5.06e-12!33;CL:0000117!5.97e-09!23;CL:0000337!5.97e-09!23;CL:0000393!1.39e-07!39;CL:0000211!1.39e-07!39 | |ontology_enrichment_celltype=CL:0000540!5.06e-12!33;CL:0000047!5.06e-12!33;CL:0000031!5.06e-12!33;CL:0000404!5.06e-12!33;CL:0000117!5.97e-09!23;CL:0000337!5.97e-09!23;CL:0000393!1.39e-07!39;CL:0000211!1.39e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.88e-12,33;CL:0000047,3.88e-12,33;CL:0000031,3.88e-12,33;CL:0000404,3.88e-12,33;CL:0000117,4.95e-09,23;CL:0000337,4.95e-09,23;CL:0000393,1.52e-07,39;CL:0000211,1.52e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!7.11e-19!94;UBERON:0007811!3.40e-18!86;UBERON:0001017!1.04e-17!73;UBERON:0005743!1.04e-17!73;UBERON:0000073!1.09e-16!75;UBERON:0001016!1.09e-16!75;UBERON:0002346!2.45e-15!71;UBERON:0003075!2.45e-15!71;UBERON:0007284!2.45e-15!71;UBERON:0004121!3.31e-15!102;UBERON:0000924!3.31e-15!102;UBERON:0006601!3.31e-15!102;UBERON:0000033!5.62e-15!63;UBERON:0003056!2.84e-14!49;UBERON:0001049!6.79e-14!52;UBERON:0005068!6.79e-14!52;UBERON:0006241!6.79e-14!52;UBERON:0007135!6.79e-14!52;UBERON:0002020!1.18e-13!34;UBERON:0000955!1.68e-13!50;UBERON:0006238!1.68e-13!50;UBERON:0002616!5.92e-13!49;UBERON:0002791!2.30e-11!29;UBERON:0003528!2.30e-11!29;UBERON:0001893!2.30e-11!29;UBERON:0003080!4.91e-11!40;UBERON:0002780!1.33e-10!39;UBERON:0001890!1.33e-10!39;UBERON:0006240!1.33e-10!39;UBERON:0000956!2.62e-08!21;UBERON:0001869!2.62e-08!21;UBERON:0000203!2.62e-08!21;UBERON:0002021!6.02e-08!10;UBERON:0000411!6.02e-08!10;UBERON:0001950!6.02e-08!10;UBERON:0002619!6.05e-07!17 | |ontology_enrichment_uberon=UBERON:0000153!7.11e-19!94;UBERON:0007811!3.40e-18!86;UBERON:0001017!1.04e-17!73;UBERON:0005743!1.04e-17!73;UBERON:0000073!1.09e-16!75;UBERON:0001016!1.09e-16!75;UBERON:0002346!2.45e-15!71;UBERON:0003075!2.45e-15!71;UBERON:0007284!2.45e-15!71;UBERON:0004121!3.31e-15!102;UBERON:0000924!3.31e-15!102;UBERON:0006601!3.31e-15!102;UBERON:0000033!5.62e-15!63;UBERON:0003056!2.84e-14!49;UBERON:0001049!6.79e-14!52;UBERON:0005068!6.79e-14!52;UBERON:0006241!6.79e-14!52;UBERON:0007135!6.79e-14!52;UBERON:0002020!1.18e-13!34;UBERON:0000955!1.68e-13!50;UBERON:0006238!1.68e-13!50;UBERON:0002616!5.92e-13!49;UBERON:0002791!2.30e-11!29;UBERON:0003528!2.30e-11!29;UBERON:0001893!2.30e-11!29;UBERON:0003080!4.91e-11!40;UBERON:0002780!1.33e-10!39;UBERON:0001890!1.33e-10!39;UBERON:0006240!1.33e-10!39;UBERON:0000956!2.62e-08!21;UBERON:0001869!2.62e-08!21;UBERON:0000203!2.62e-08!21;UBERON:0002021!6.02e-08!10;UBERON:0000411!6.02e-08!10;UBERON:0001950!6.02e-08!10;UBERON:0002619!6.05e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.53e-19,64;UBERON:0003075,4.53e-19,64;UBERON:0007284,4.53e-19,64;UBERON:0004121,7.51e-18,95;UBERON:0000924,7.51e-18,95;UBERON:0006601,7.51e-18,95;UBERON:0001017,9.48e-18,73;UBERON:0010371,4.36e-17,73;UBERON:0001016,1.01e-16,75;UBERON:0000073,1.63e-15,54;UBERON:0003056,2.27e-14,49;UBERON:0001049,3.86e-14,52;UBERON:0005068,3.86e-14,52;UBERON:0006241,3.86e-14,52;UBERON:0007135,3.86e-14,52;UBERON:0002020,9.69e-14,34;UBERON:0000955,4.56e-12,47;UBERON:0006238,4.56e-12,47;UBERON:0002616,1.56e-11,46;UBERON:0003528,1.99e-11,29;UBERON:0002791,1.99e-11,29;UBERON:0001893,1.99e-11,29;UBERON:0003080,4.23e-11,40;UBERON:0002780,1.16e-10,39;UBERON:0001890,1.16e-10,39;UBERON:0006240,1.16e-10,39;UBERON:0010314,3.28e-10,92;UBERON:0000956,2.45e-08,21;UBERON:0001869,2.45e-08,21;UBERON:0000203,2.45e-08,21;UBERON:0002021,5.12e-08,10;UBERON:0000411,5.12e-08,10;UBERON:0001950,5.12e-08,10;UBERON:0002619,5.83e-07,17 | |||
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|phase1_expression=2.08193501236232,1.74487703819681,0.454999239389536,0.90739263392049,1.00179145989269,1.51091344720701,2.10251376535973,3.74457637980571,11.2630977721333,10.5329036844897,10.1018601253048,9.6524312384357,4.28001824828014,2.36035086531293,2.33176833270964,0.404950534779652,0,0.630924330716475,0.959801035240171,0.84877930359606,16.4983982893075,0.893618560807968,0.522399578277871,0.319984845586813,0.91763712426868,0,0,0.215471232685889,0.380046838912748,0,0.221730510655305,1.27006134691926,2.46025915033828,0,1.44425809875637,1.16364251750945,1.02084678131185,0.418531630736908,0,0,1.17646297606203,0.683045484958446,0.971020706062307,1.00717454380462,0.506884656097573,0.734187008646726,0,1.09012578190223,0.439372365468944,0.777719596297134,0.839918529752175,1.43752564364972,0.335565212115473,2.90144856804538,3.02484419228218,0.771778308107841,0.573066879877513,1.03134418455488,4.85559506063035,3.70293685490423,4.43681982454325,1.0165335962074,0,1.3498495759221,0.988866362566974,2.1314403448383,0.898800331555214,1.15265491596466,6.0139975138917,4.18518408828241,6.73039876324422,8.56952953211411,6.84692476950002,4.65465037016825,5.84657373211242,4.5960939330501,15.4162233399144,23.4944702076745,17.050325191443,4.87979264601717,6.12967212136145,5.73004707612436,11.725685958058,5.06486349028512,11.0014738399303,10.606629077052,10.1083893367363,8.76077395378913,1.36307147999731,1.20914496170857,0.579728977403356,0.860423876981386,3.39985666853875,2.15881276655127,1.29955283489534,2.68816132258401,3.23022166303029,2.55645483867087,1.29893002301434,1.41335829804136,2.11265129665021,1.28326477414318,2.54805239706646,0,0,0.506719730950197,0.505524445014783,5.25245846707676,1.29468941823586,0.445326417194474,2.08182392119363,2.13125834818499,2.07553947530453,0.753613202763113,1.76383060703557,1.63366568728578,1.97755974187499,2.02439099687876,0.884610551949874,4.20593809863264,2.87093973998512,5.33362778448744,0,10.8328894894272,9.84399522023239,0.766371165625774,1.55759661857696,1.19980546198682,1.14363204365758,8.68785708547972,15.0975198930147,7.91622418311046,39.9795936442236,46.2844977767898,16.4152555202052,19.3067103050632,3.1570202793598,1.8661045591514,0.758168275301024,7.15502310014011,4.42409506073193,3.67843367093557,5.40186389416048,5.12396380641431,8.70867189136997,12.5551445879153,11.9001190190856,13.7112786491678,4.31135985865684,3.21480336285293,3.87092473160687,6.1374805079721,2.78047249225598,4.179025998266,4.32142486456681,2.9855140022774,1.40442637462647,0.257347907114715,0.568326998791185,2.07125772535502,0.938104239924385,1.98068267607116,2.3674473558521,0.983821158737019,3.23960937063494,2.55787339225449,2.95100741539581,1.5179494507732,1.31647879930784,1.80584210487005,2.02672023864639,2.48539978623065,4.61055242111206,2.41571553768669,25.6553737248235,7.20332286654991,0,0.264450566663544,2.98603550749328,5.34144345279009,2.70621668776396,2.62188582010345,2.2237804384487,0.760902504450237,1.89811624617805,1.31759163779209,0,0.994782360205754,0.58489226135736,1.79763881730844,0.648414149624083,0.199141273254367,3.60369011810855,2.85621281524322,0,2.8511185898344,0.775809948670503,1.8936671370386,1.45444035385792,0.885660887877613,0.627994911365499,0.493588655687202,1.48226313543574,2.50267658574141,3.14494392181125,0.674586337154561,1.62288097110802,1.20588579876208,0.763877555344259,0.287696137450811,1.45921704097532,0.823684239564244,0,2.60498663367952,2.18426371180192,2.02063102357689,1.79397413521912,4.3419916922703,0.369506380333209,2.84237117655727,0.488894929326078,1.69745085775188,1.64283173801951,2.34508760418542,2.38043640886014,0.780534591431195,2.52216230569906,0.664394068946325,1.75400245523236,0.655453258862952,1.03610989119537,1.3018415272336,0,0.54390568381871,1.47529281905711,0.827810238914197,7.70642831941401,12.7760738385501,2.29508923527346,7.06918596172244,8.51872192423893,6.63745865304285,13.3562506594335,4.77937595905104,6.01556420022464,7.07691326972081,10.5250782435473,7.3063964477828,7.11518000303742,16.0660658210904,3.54850213020672,3.73937767701236,4.0721739838394,1.31976098378028,6.63725691699814,3.39892890616974,1.81394134178851,5.28094223316515,4.13422650033082,2.45948118355142,2.84271122485043,1.45413491791002,4.63446591900138,3.47640433729398,0,5.15677716240934,2.7235168460303,2.88097750450096,1.81102157295856,1.50035924522115,2.6601035046341,2.67553226403106,2.63278432963394,3.65357938937519,2.58138878870081,6.14313005505079,0.220528398054962,2.14352128823924,6.29711264114032,4.40284351975538,3.70054266409723,1.80554989719567,1.1659233465194,6.11903496634682,0.854354403989263,2.68302928352189,2.59272338317596,2.44878994106098,2.1871076435364,1.37266903923914,1.5298058699447,1.6794174278839,1.24379976423981,0.954670618015114,3.16335993581135,2.84647253977588,2.70013352054503,2.71814784818809,1.31017538247707,1.75323650300267,2.23164330458407,0.785267825952089,0.90730481304255,0,75.5348537836815,2.39226473670366,2.97825282822776,1.36115831840833,3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| ||
|short_description=p3@BC024659 | |short_description=p3@BC024659 | ||
}} | }} |
Latest revision as of 14:36, 1 October 2015
Short description: | p3@BC024659 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_BC024659_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 16bp_to_ENSMUST00000165561_5end |
EntrezGene: | BC024659 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.88e-12 | 33 |
neuronal stem cell | 3.88e-12 | 33 |
neuroblast | 3.88e-12 | 33 |
electrically signaling cell | 3.88e-12 | 33 |
CNS neuron (sensu Vertebrata) | 4.95e-09 | 23 |
neuroblast (sensu Vertebrata) | 4.95e-09 | 23 |
electrically responsive cell | 1.52e-07 | 39 |
electrically active cell | 1.52e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 4.53e-19 | 64 |
neural plate | 4.53e-19 | 64 |
presumptive neural plate | 4.53e-19 | 64 |
ectoderm-derived structure | 7.51e-18 | 95 |
ectoderm | 7.51e-18 | 95 |
presumptive ectoderm | 7.51e-18 | 95 |
central nervous system | 9.48e-18 | 73 |
ecto-epithelium | 4.36e-17 | 73 |
nervous system | 1.01e-16 | 75 |
regional part of nervous system | 1.63e-15 | 54 |
pre-chordal neural plate | 2.27e-14 | 49 |
neural tube | 3.86e-14 | 52 |
neural rod | 3.86e-14 | 52 |
future spinal cord | 3.86e-14 | 52 |
neural keel | 3.86e-14 | 52 |
gray matter | 9.69e-14 | 34 |
brain | 4.56e-12 | 47 |
future brain | 4.56e-12 | 47 |
regional part of brain | 1.56e-11 | 46 |
brain grey matter | 1.99e-11 | 29 |
regional part of telencephalon | 1.99e-11 | 29 |
telencephalon | 1.99e-11 | 29 |
anterior neural tube | 4.23e-11 | 40 |
regional part of forebrain | 1.16e-10 | 39 |
forebrain | 1.16e-10 | 39 |
future forebrain | 1.16e-10 | 39 |
structure with developmental contribution from neural crest | 3.28e-10 | 92 |
cerebral cortex | 2.45e-08 | 21 |
cerebral hemisphere | 2.45e-08 | 21 |
pallium | 2.45e-08 | 21 |
occipital lobe | 5.12e-08 | 10 |
visual cortex | 5.12e-08 | 10 |
neocortex | 5.12e-08 | 10 |
regional part of cerebral cortex | 5.83e-07 | 17 |