FFCP PHASE1:Mm9::chr5:135028284..135028314,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr5:135028284..135028314,- to FFCP PHASE1:Mm9::chr5:135028284..135028314,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=269713 | |EntrezGene=269713 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3505 | |||
|TSSclassifier=NA | |||
|UniProt=Q9Z0H8 | |UniProt=Q9Z0H8 | ||
|association_with_transcript=0bp_to_ENSMUST00000036999,ENSMUST00000100647,NM_001039162,NM_009990,uc008zwi.1,uc008zwj.1_5end | |||
|cluster_id=chr5:135028284..135028314,- | |||
|description=CAGE_peak_2_at_Clip2_5end | |||
|id=chr5:135028284..135028314,- | |||
|ontology_enrichment_celltype=CL:0000540!2.12e-16!33;CL:0000047!2.12e-16!33;CL:0000031!2.12e-16!33;CL:0000404!2.12e-16!33;CL:0000117!2.85e-14!23;CL:0000337!2.85e-14!23;CL:0000393!1.38e-12!39;CL:0000211!1.38e-12!39;CL:0002319!3.95e-12!43;CL:0000221!7.43e-12!44;CL:0000133!7.43e-12!44;CL:0000055!5.23e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.81e-16,33;CL:0000047,1.81e-16,33;CL:0000031,1.81e-16,33;CL:0000404,1.81e-16,33;CL:0000117,2.50e-14,23;CL:0000337,2.50e-14,23;CL:0000393,1.27e-12,39;CL:0000211,1.27e-12,39;CL:0002319,4.87e-12,43;CL:0000221,9.13e-12,44;CL:0000133,9.13e-12,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.27e-20!75;UBERON:0001016!1.27e-20!75;UBERON:0001017!5.11e-20!73;UBERON:0005743!5.11e-20!73;UBERON:0002346!1.32e-14!71;UBERON:0003075!1.32e-14!71;UBERON:0007284!1.32e-14!71;UBERON:0004121!2.17e-14!102;UBERON:0000924!2.17e-14!102;UBERON:0006601!2.17e-14!102;UBERON:0001049!7.74e-14!52;UBERON:0005068!7.74e-14!52;UBERON:0006241!7.74e-14!52;UBERON:0007135!7.74e-14!52;UBERON:0000955!4.43e-13!50;UBERON:0006238!4.43e-13!50;UBERON:0002020!5.38e-13!34;UBERON:0003056!5.48e-13!49;UBERON:0002616!1.70e-12!49;UBERON:0000033!2.57e-12!63;UBERON:0003080!6.81e-12!40;UBERON:0002780!2.38e-11!39;UBERON:0001890!2.38e-11!39;UBERON:0006240!2.38e-11!39;UBERON:0002791!1.12e-10!29;UBERON:0003528!1.12e-10!29;UBERON:0001893!1.12e-10!29;UBERON:0007811!3.48e-07!86;UBERON:0000153!4.33e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.47e-20,75;UBERON:0001017,5.92e-20,73;UBERON:0002346,3.55e-16,64;UBERON:0003075,3.55e-16,64;UBERON:0007284,3.55e-16,64;UBERON:0004121,3.64e-15,95;UBERON:0000924,3.64e-15,95;UBERON:0006601,3.64e-15,95;UBERON:0000073,8.08e-15,54;UBERON:0001049,7.68e-14,52;UBERON:0005068,7.68e-14,52;UBERON:0006241,7.68e-14,52;UBERON:0007135,7.68e-14,52;UBERON:0002020,5.49e-13,34;UBERON:0003056,6.16e-13,49;UBERON:0003080,6.92e-12,40;UBERON:0000955,9.02e-12,47;UBERON:0006238,9.02e-12,47;UBERON:0002780,2.42e-11,39;UBERON:0001890,2.42e-11,39;UBERON:0006240,2.42e-11,39;UBERON:0002616,3.34e-11,46;UBERON:0003528,1.16e-10,29;UBERON:0002791,1.16e-10,29;UBERON:0001893,1.16e-10,29;UBERON:0010371,1.59e-10,73;UBERON:0010314,1.20e-07,92 | |||
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| ||
|short_description=p2@Clip2 | |||
}} | }} |
Latest revision as of 23:41, 1 October 2015
Short description: | p2@Clip2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Clip2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3505 |
Association with transcript: | 0bp_to_ENSMUST00000036999, ENSMUST00000100647, NM_001039162, NM_009990, uc008zwi.1, uc008zwj.1_5end |
EntrezGene: | Clip2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.81e-16 | 33 |
neuronal stem cell | 1.81e-16 | 33 |
neuroblast | 1.81e-16 | 33 |
electrically signaling cell | 1.81e-16 | 33 |
CNS neuron (sensu Vertebrata) | 2.50e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.50e-14 | 23 |
electrically responsive cell | 1.27e-12 | 39 |
electrically active cell | 1.27e-12 | 39 |
neural cell | 4.87e-12 | 43 |
ectodermal cell | 9.13e-12 | 44 |
neurectodermal cell | 9.13e-12 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.47e-20 | 75 |
central nervous system | 5.92e-20 | 73 |
neurectoderm | 3.55e-16 | 64 |
neural plate | 3.55e-16 | 64 |
presumptive neural plate | 3.55e-16 | 64 |
ectoderm-derived structure | 3.64e-15 | 95 |
ectoderm | 3.64e-15 | 95 |
presumptive ectoderm | 3.64e-15 | 95 |
regional part of nervous system | 8.08e-15 | 54 |
neural tube | 7.68e-14 | 52 |
neural rod | 7.68e-14 | 52 |
future spinal cord | 7.68e-14 | 52 |
neural keel | 7.68e-14 | 52 |
gray matter | 5.49e-13 | 34 |
pre-chordal neural plate | 6.16e-13 | 49 |
anterior neural tube | 6.92e-12 | 40 |
brain | 9.02e-12 | 47 |
future brain | 9.02e-12 | 47 |
regional part of forebrain | 2.42e-11 | 39 |
forebrain | 2.42e-11 | 39 |
future forebrain | 2.42e-11 | 39 |
regional part of brain | 3.34e-11 | 46 |
brain grey matter | 1.16e-10 | 29 |
regional part of telencephalon | 1.16e-10 | 29 |
telencephalon | 1.16e-10 | 29 |
ecto-epithelium | 1.59e-10 | 73 |
structure with developmental contribution from neural crest | 1.20e-07 | 92 |