Template:FFCP: Difference between revisions
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{{Fontsize|3|CAGE Expression}} | {{Fontsize|3|CAGE Expression}} | ||
---- | ---- | ||
<html><script type="text/ | <html><script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script> | ||
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | <script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | ||
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script> | <script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script> | ||
<style type="text/css" title="currentStyle"> | <style type="text/css" title="currentStyle"> | ||
@import "/5/sstar/rb_js/datatables | @import "/5/sstar/rb_js/html5button/datatables.css"; | ||
@import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | @import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | ||
</style> | </style> | ||
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<script type="text/javascript"> | <script type="text/javascript"> | ||
$(document).ready(function() { | $(document).ready(function() { | ||
var oTable = $('#gene_exptable'). | var oTable = $('#gene_exptable').DataTable({ | ||
dom: 'frt', | |||
scrollY: "300px", | |||
paging: false, | |||
scrollCollapse: true, | |||
pageLength: -1, | |||
order: [[1,'desc']], | |||
columnDefs: [{ orderSequence: [ "desc", "asc" ], targets: [ 1 ] }, { type: "html-num", targets: [ 0 ] } ] | |||
}); | }); | ||
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom"); | $('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom"); | ||
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// chart checkbox | // chart checkbox | ||
for (var i2=1; i2< | for (var i2=1; i2<$('#gene_exptable thead th').length; i2++){ | ||
key2 = i2-1; | key2 = i2-1; | ||
$("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 + | $("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 + | ||
'" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">' | '" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">' | ||
+ $( | + $('#gene_exptable thead th:nth-child('+(i2+1)+')').text() + '</label><br/>'); | ||
} | } | ||
function collectdata(){ | function collectdata(){ | ||
data = []; | data = []; | ||
for (i2=1, len2= | for (i2=1, len2=$('#gene_exptable thead th').length; i2<len2; i2++){ | ||
var plots = []; | var plots = []; | ||
for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) { | for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) { | ||
plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]); | plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]); | ||
} | } | ||
data.push({"label": $( | data.push({"label": $('#gene_exptable thead th:nth-child('+(i2+1)+')').text(), "data": plots}); | ||
} | } | ||
slist = []; | slist = []; | ||
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---- | ---- | ||
<html> | <html> | ||
<script type="text/ | <script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script> | ||
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | <script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | ||
<style type="text/css" title="currentStyle"> | <style type="text/css" title="currentStyle"> | ||
@import "/5/sstar/rb_js/datatables | @import "/5/sstar/rb_js/html5button/datatables.css"; | ||
@import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | @import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | ||
.table_title{ | .table_title{ | ||
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$(document).ready(function() { | $(document).ready(function() { | ||
var oTable = $('.enrichment_list'). | var oTable = $('.enrichment_list').DataTable({ | ||
dom: 'frtip', | |||
scrollCollapse: false, | |||
columnDefs: [{ orderable: false, targets: [ 0 ] }, { type: "html-num", width: "50pt", targets: [1] }], | |||
order: [[ 1, "asc" ]] | |||
}); | }); | ||
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{{#if:{{{ontology_enrichment_celltype_v019_2}}}| | {{#if:{{{ontology_enrichment_celltype_v019_2}}}| | ||
<div style="float:left;width:33%;"> | <div style="float:left;width:33%;"> | ||
<table class="enrichment_list"><caption class="table_title">Cell type</caption><html><thead></html> | <table class="enrichment_list stripe cell-border order-column compact"><caption class="table_title">Cell type</caption><html><thead></html> | ||
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | <tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | ||
<html></thead><tbody></html> | <html></thead><tbody></html> | ||
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}}{{#if:{{{ontology_enrichment_uberon_v019_2}}}| | }}{{#if:{{{ontology_enrichment_uberon_v019_2}}}| | ||
<div style="float:left;width:33%;"> | <div style="float:left;width:33%;"> | ||
<table class="enrichment_list"><caption class="table_title">Uber anatomy</caption><html><thead></html> | <table class="enrichment_list stripe cell-border order-column compact"><caption class="table_title">Uber anatomy</caption><html><thead></html> | ||
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | <tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | ||
<html></thead><tbody></html> | <html></thead><tbody></html> | ||
Revision as of 18:58, 15 February 2018
| Short description: | |
|---|---|
| Species: | |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | |
| Coexpression cluster: | |
| Association with transcript: | |
| EntrezGene: | {{{EntrezGene}}} |
| HGNC: | NA |
| UniProt: | NA |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
"FFCP" is not a number.
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
