Personal tools

Template:FFCP others: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
mNo edit summary
 
(2 intermediate revisions by the same user not shown)
Line 18: Line 18:
{{Fontsize|3|CAGE Expression}}
{{Fontsize|3|CAGE Expression}}
----
----
<html><script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<html><script type="text/javascript" language="javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
Line 209: Line 210:
{{#set:genomic_location_end={{#explode:{{#explode:{{PAGENAME}}|..|-1}}|,|0}}}}
{{#set:genomic_location_end={{#explode:{{#explode:{{PAGENAME}}|..|-1}}|,|0}}}}
{{#set:strand={{#explode:{{PAGENAME}}|,|-1}}}}
{{#set:strand={{#explode:{{PAGENAME}}|,|-1}}}}
{{#set:dpi_dataset={{{DPIdataset}}}}}
{{#set:TSS_like_by_RIKEN_classifier={{{TSSclassifier}}}}}
<!--{{#set:GencodeV16b_All_Build2_RSEM10_CPAT_consensus={{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}}}}-->{{#set:DHS_support={{{DHSsupport}}}}}


{{#set:cage_peaks_id={{{cage_peaks_id}}}}}
{{#set:cage_peaks_id={{{cage_peaks_id}}}}}
Line 219: Line 217:
{{#set:score={{{score}}}}}
{{#set:score={{{score}}}}}
{{#set:strand={{{strand}}}}}
{{#set:strand={{{strand}}}}}
{{#set:ensembl_transcript_id={{{ensembl_transcript_id}}}}}
{{#set:ensembl_transcript_id={{{ensembl_transcript_id|}}}}}
{{#set:ensembl_gene_id={{{ensembl_gene_id}}}}}
{{#set:ensembl_gene_id={{{ensembl_gene_id}}}}}
{{#set:ensembl_gene_name={{{ensembl_gene_name}}}}}
{{#set:ensembl_gene_name={{{ensembl_gene_name}}}}}
Line 226: Line 224:
{{#set:genscan_gene_name={{{genscan_gene_name}}}}}
{{#set:genscan_gene_name={{{genscan_gene_name}}}}}
{{#set:est_gene_name={{{est_gene_name}}}}}
{{#set:est_gene_name={{{est_gene_name}}}}}
{{#set:aldb_lincRNA={{{aldb_lincRNA}}}}}
{{#set:noncode={{{noncode}}}}}
{{#set:species={{{species}}}}}
{{#set:species={{{species}}}}}


[[Category:FFCP]]
[[Category:FFCP]]

Latest revision as of 13:07, 25 January 2019


CAGE_peaks_ID:{{{cage_peaks_id}}}
Chr:{{{chromosome}}}
Start:{{{start}}}
End:{{{end}}}
Score:{{{score}}}
Strand:{{{strand}}}
Ensembl_transcript_id:{{{ensembl_transcript_id}}}
Augustus_gene_name:{{{augustus_gene_name}}}
RefSeq_transcript_id:{{{refseq_transcript_id}}}
Genscan_gene_name:{{{genscan_gene_name}}}
EST_gene_name:{{{est_gene_name}}}


CAGE Expression







  • Click each plot point to find sample in table






"FFCP others" is not a number.


Property "Cage peaks id" (as page type) with input value "{{{cage_peaks_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Property "Start" (as page type) with input value "{{{start}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "End" (as page type) with input value "{{{end}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Score" (as page type) with input value "{{{score}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.


Property "Ensembl gene id" (as page type) with input value "{{{ensembl_gene_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Ensembl gene name" (as page type) with input value "{{{ensembl_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Augustus gene name" (as page type) with input value "{{{augustus_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Refseq transcript id" (as page type) with input value "{{{refseq_transcript_id}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Genscan gene name" (as page type) with input value "{{{genscan_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Est gene name" (as page type) with input value "{{{est_gene_name}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.