FF:10040-101F4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005272 | ||
|accession_numbers=CAGE;DRX008656;DRR009528;DRZ000953;DRZ002338;DRZ012303;DRZ013688 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001870,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010040 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10040-101F4 | |id=FF:10040-101F4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010040 | ||
|is_obsolete= | |||
|library_id=CNhs10647 | |||
|library_id_phase_based=2:CNhs10647 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10040 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10040 | |||
|name=frontal lobe, adult, pool1 | |name=frontal lobe, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10647,LSID658,release008,COMPLETED | |profile_hcage=CNhs10647,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636563 | |rna_catalog_number=Cat:636563 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.06144317951982e-296!GO:0005737;cytoplasm;3.32055402463562e-149!GO:0044444;cytoplasmic part;3.05340705132751e-96!GO:0043226;organelle;4.61751400204791e-89!GO:0043229;intracellular organelle;1.55349448265684e-88!GO:0043227;membrane-bound organelle;4.2345960121045e-83!GO:0043231;intracellular membrane-bound organelle;5.98765839935233e-83!GO:0044422;organelle part;2.16082717844127e-60!GO:0005515;protein binding;1.45411400654555e-59!GO:0044446;intracellular organelle part;1.63656247925045e-59!GO:0032991;macromolecular complex;1.16471555277583e-55!GO:0016043;cellular component organization and biogenesis;5.62354723010674e-44!GO:0033036;macromolecule localization;3.5144759929864e-41!GO:0015031;protein transport;1.3586881082283e-40!GO:0003723;RNA binding;1.06976207716972e-37!GO:0005739;mitochondrion;1.06976207716972e-37!GO:0008104;protein localization;1.28400310984855e-37!GO:0031090;organelle membrane;5.67609365136055e-37!GO:0045184;establishment of protein localization;8.66588031084775e-37!GO:0030529;ribonucleoprotein complex;8.66588031084775e-37!GO:0043234;protein complex;3.22165299210935e-31!GO:0046907;intracellular transport;1.62955824928275e-30!GO:0051649;establishment of cellular localization;5.11404379027927e-29!GO:0051641;cellular localization;6.69991781083492e-29!GO:0044429;mitochondrial part;2.00402232510488e-28!GO:0043233;organelle lumen;2.63125652228659e-28!GO:0031974;membrane-enclosed lumen;2.63125652228659e-28!GO:0016192;vesicle-mediated transport;4.54305801317194e-27!GO:0044428;nuclear part;9.59744317828216e-27!GO:0031975;envelope;5.74567077383955e-24!GO:0031967;organelle envelope;7.72124676131609e-24!GO:0019538;protein metabolic process;2.49120877149519e-23!GO:0016071;mRNA metabolic process;4.12640819604309e-23!GO:0006886;intracellular protein transport;1.09037713115635e-22!GO:0006396;RNA processing;1.7763542863075e-22!GO:0044238;primary metabolic process;6.53256748161319e-22!GO:0008380;RNA splicing;2.2446758357511e-21!GO:0005829;cytosol;5.00823844492059e-21!GO:0005794;Golgi apparatus;1.19280421551535e-20!GO:0006119;oxidative phosphorylation;1.46388386607135e-20!GO:0044237;cellular metabolic process;3.29368380176173e-20!GO:0044260;cellular macromolecule metabolic process;3.88692394304072e-20!GO:0043170;macromolecule metabolic process;3.91065570042806e-20!GO:0005840;ribosome;9.7332833782991e-20!GO:0044267;cellular protein metabolic process;1.12104065182651e-19!GO:0006397;mRNA processing;1.28310451413913e-19!GO:0005740;mitochondrial envelope;1.65832871956841e-19!GO:0031982;vesicle;2.98757568930325e-19!GO:0031966;mitochondrial membrane;3.62111410322243e-19!GO:0031410;cytoplasmic vesicle;1.69448762277923e-18!GO:0031988;membrane-bound vesicle;3.67675556265332e-18!GO:0006996;organelle organization and biogenesis;7.9096209125413e-18!GO:0005634;nucleus;1.42121106841372e-17!GO:0016023;cytoplasmic membrane-bound vesicle;1.77030762917677e-17!GO:0000166;nucleotide binding;4.52403098851836e-17!GO:0006512;ubiquitin cycle;9.22444721664162e-17!GO:0019866;organelle inner membrane;9.49394076653507e-17!GO:0005743;mitochondrial inner membrane;2.03228582581297e-16!GO:0065003;macromolecular complex assembly;6.23377856199789e-16!GO:0031981;nuclear lumen;6.53147317464907e-16!GO:0003735;structural constituent of ribosome;8.87766688103224e-16!GO:0006412;translation;2.4690379562169e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.00759846403658e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;4.76107558304688e-15!GO:0016462;pyrophosphatase activity;5.50269941299196e-15!GO:0044455;mitochondrial membrane part;1.52679641946892e-14!GO:0045045;secretory pathway;1.74922167412185e-14!GO:0012505;endomembrane system;2.40530784299726e-14!GO:0005681;spliceosome;3.10724136702108e-14!GO:0017111;nucleoside-triphosphatase activity;3.21240546288978e-14!GO:0043412;biopolymer modification;3.5635271146596e-14!GO:0022607;cellular component assembly;4.19304355265113e-14!GO:0005746;mitochondrial respiratory chain;5.85060014875741e-14!GO:0016874;ligase activity;1.23628175955421e-13!GO:0043687;post-translational protein modification;1.9317863913519e-13!GO:0006464;protein modification process;2.20979230642605e-13!GO:0009058;biosynthetic process;2.70975694919182e-13!GO:0032553;ribonucleotide binding;2.70975694919182e-13!GO:0032555;purine ribonucleotide binding;2.70975694919182e-13!GO:0050136;NADH dehydrogenase (quinone) activity;7.97146232172611e-13!GO:0003954;NADH dehydrogenase activity;7.97146232172611e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.97146232172611e-13!GO:0007264;small GTPase mediated signal transduction;8.02263293599357e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.22030559236561e-12!GO:0006810;transport;1.26080437977829e-12!GO:0048770;pigment granule;1.26080437977829e-12!GO:0042470;melanosome;1.26080437977829e-12!GO:0033279;ribosomal subunit;1.60768866614878e-12!GO:0017076;purine nucleotide binding;2.50903594526295e-12!GO:0043283;biopolymer metabolic process;3.19026859269262e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.82499089043057e-12!GO:0006457;protein folding;6.41124640353973e-12!GO:0048193;Golgi vesicle transport;6.81854942582993e-12!GO:0030135;coated vesicle;8.00534342314774e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.2742724579179e-11!GO:0042773;ATP synthesis coupled electron transport;3.2742724579179e-11!GO:0009059;macromolecule biosynthetic process;3.58230363681354e-11!GO:0030964;NADH dehydrogenase complex (quinone);4.06165419336634e-11!GO:0045271;respiratory chain complex I;4.06165419336634e-11!GO:0005747;mitochondrial respiratory chain complex I;4.06165419336634e-11!GO:0031980;mitochondrial lumen;4.06782918299743e-11!GO:0005759;mitochondrial matrix;4.06782918299743e-11!GO:0022618;protein-RNA complex assembly;8.29096651738302e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.45420963475053e-11!GO:0044249;cellular biosynthetic process;1.02428305302842e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.30633549976751e-10!GO:0019829;cation-transporting ATPase activity;1.41871462800199e-10!GO:0008092;cytoskeletal protein binding;1.43750409422994e-10!GO:0043005;neuron projection;1.59927237661234e-10!GO:0006511;ubiquitin-dependent protein catabolic process;1.59927237661234e-10!GO:0044431;Golgi apparatus part;1.95336954565899e-10!GO:0019941;modification-dependent protein catabolic process;2.2224899319043e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.2224899319043e-10!GO:0030695;GTPase regulator activity;2.27638578506149e-10!GO:0008135;translation factor activity, nucleic acid binding;2.33713454538757e-10!GO:0044257;cellular protein catabolic process;2.78982491877628e-10!GO:0005654;nucleoplasm;2.9477241951196e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.99098253670024e-10!GO:0003924;GTPase activity;3.69022205366888e-10!GO:0051234;establishment of localization;5.70842450933403e-10!GO:0005083;small GTPase regulator activity;6.13396946831347e-10!GO:0007399;nervous system development;8.12545730141279e-10!GO:0005768;endosome;1.05132639605305e-09!GO:0032940;secretion by cell;1.11297709552806e-09!GO:0051082;unfolded protein binding;1.35325392074122e-09!GO:0006605;protein targeting;1.55795882201474e-09!GO:0051179;localization;1.56481774404774e-09!GO:0044445;cytosolic part;2.24094197572517e-09!GO:0006793;phosphorus metabolic process;2.37676014045238e-09!GO:0006796;phosphate metabolic process;2.37676014045238e-09!GO:0008639;small protein conjugating enzyme activity;3.06360079310941e-09!GO:0005525;GTP binding;3.10468343325313e-09!GO:0044451;nucleoplasm part;3.83851321703756e-09!GO:0008565;protein transporter activity;4.78147317666069e-09!GO:0019787;small conjugating protein ligase activity;5.08852260237309e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.13346357680985e-09!GO:0004842;ubiquitin-protein ligase activity;5.13510604703294e-09!GO:0044265;cellular macromolecule catabolic process;5.35387954076142e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.13909563121109e-09!GO:0043228;non-membrane-bound organelle;8.02455567433574e-09!GO:0043232;intracellular non-membrane-bound organelle;8.02455567433574e-09!GO:0000502;proteasome complex (sensu Eukaryota);9.88261563650049e-09!GO:0005783;endoplasmic reticulum;9.88261563650049e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.07334915691155e-08!GO:0015986;ATP synthesis coupled proton transport;1.32086128500124e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.32086128500124e-08!GO:0030136;clathrin-coated vesicle;2.32158477541821e-08!GO:0030163;protein catabolic process;3.97320236146518e-08!GO:0007010;cytoskeleton organization and biogenesis;4.15430306386997e-08!GO:0016044;membrane organization and biogenesis;4.6256672403062e-08!GO:0000139;Golgi membrane;5.54133340746928e-08!GO:0010467;gene expression;6.75148480955477e-08!GO:0016881;acid-amino acid ligase activity;7.02933289642245e-08!GO:0008134;transcription factor binding;7.31329596744855e-08!GO:0043285;biopolymer catabolic process;9.51691080208064e-08!GO:0003743;translation initiation factor activity;9.95349411794075e-08!GO:0032561;guanyl ribonucleotide binding;1.0146391178137e-07!GO:0019001;guanyl nucleotide binding;1.0146391178137e-07!GO:0032559;adenyl ribonucleotide binding;1.05255799633799e-07!GO:0051186;cofactor metabolic process;1.20471393193887e-07!GO:0019717;synaptosome;1.66630536000534e-07!GO:0015935;small ribosomal subunit;1.8583866707949e-07!GO:0015631;tubulin binding;2.01104937178507e-07!GO:0006461;protein complex assembly;2.11213218160337e-07!GO:0006413;translational initiation;2.24039755463019e-07!GO:0044248;cellular catabolic process;2.41525934079696e-07!GO:0009060;aerobic respiration;2.53099866104387e-07!GO:0046034;ATP metabolic process;2.53099866104387e-07!GO:0006446;regulation of translational initiation;2.54324966667307e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.57896397869004e-07!GO:0005524;ATP binding;3.01212752158347e-07!GO:0045333;cellular respiration;3.63896336391859e-07!GO:0016604;nuclear body;3.81745934586138e-07!GO:0016607;nuclear speck;4.53591853515298e-07!GO:0048471;perinuclear region of cytoplasm;5.11640959447294e-07!GO:0009141;nucleoside triphosphate metabolic process;6.24505171376681e-07!GO:0044440;endosomal part;6.48634045511921e-07!GO:0010008;endosome membrane;6.48634045511921e-07!GO:0006754;ATP biosynthetic process;6.81204692802027e-07!GO:0006753;nucleoside phosphate metabolic process;6.81204692802027e-07!GO:0030554;adenyl nucleotide binding;6.92426584850054e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.25171121106237e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.25171121106237e-07!GO:0006163;purine nucleotide metabolic process;7.54958502229576e-07!GO:0030036;actin cytoskeleton organization and biogenesis;7.94086059422861e-07!GO:0048475;coated membrane;7.97644196731749e-07!GO:0030117;membrane coat;7.97644196731749e-07!GO:0015630;microtubule cytoskeleton;8.42938654144973e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.52246787204643e-07!GO:0009199;ribonucleoside triphosphate metabolic process;9.21044114775422e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.29543320298052e-07!GO:0009057;macromolecule catabolic process;9.74687306183723e-07!GO:0009150;purine ribonucleotide metabolic process;1.00019062557767e-06!GO:0019226;transmission of nerve impulse;1.09709383429472e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.13621504045023e-06!GO:0000375;RNA splicing, via transesterification reactions;1.13621504045023e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.13621504045023e-06!GO:0016310;phosphorylation;1.16257923896349e-06!GO:0006164;purine nucleotide biosynthetic process;1.38503271584599e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.41814038256901e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.79452751416328e-06!GO:0005761;mitochondrial ribosome;2.07355427890263e-06!GO:0000313;organellar ribosome;2.07355427890263e-06!GO:0009259;ribonucleotide metabolic process;2.15426937814257e-06!GO:0030425;dendrite;2.26773937104571e-06!GO:0008287;protein serine/threonine phosphatase complex;2.29824339769176e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.32142616125038e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.72934831278773e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.72934831278773e-06!GO:0006913;nucleocytoplasmic transport;3.26043126123484e-06!GO:0007242;intracellular signaling cascade;3.33764617364721e-06!GO:0031965;nuclear membrane;3.51518125154861e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.56614836219883e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.56614836219883e-06!GO:0030029;actin filament-based process;4.6454518408225e-06!GO:0051169;nuclear transport;4.71707832206692e-06!GO:0019899;enzyme binding;5.14213160673839e-06!GO:0007265;Ras protein signal transduction;5.213771533481e-06!GO:0006099;tricarboxylic acid cycle;5.24888008374589e-06!GO:0046356;acetyl-CoA catabolic process;5.24888008374589e-06!GO:0042623;ATPase activity, coupled;6.3708342859244e-06!GO:0009260;ribonucleotide biosynthetic process;7.25241720141189e-06!GO:0006732;coenzyme metabolic process;7.53786159800737e-06!GO:0015934;large ribosomal subunit;7.85380487629262e-06!GO:0016887;ATPase activity;1.06882102139938e-05!GO:0005905;coated pit;1.18714702814057e-05!GO:0005798;Golgi-associated vesicle;1.20504741058887e-05!GO:0048489;synaptic vesicle transport;1.24137928673513e-05!GO:0003779;actin binding;1.24279950096458e-05!GO:0051056;regulation of small GTPase mediated signal transduction;1.29827065951833e-05!GO:0032446;protein modification by small protein conjugation;1.33635658425732e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.41688280379807e-05!GO:0005635;nuclear envelope;1.44362340409417e-05!GO:0008021;synaptic vesicle;1.45795967532361e-05!GO:0005770;late endosome;1.49282391744848e-05!GO:0009109;coenzyme catabolic process;1.80965477495989e-05!GO:0045259;proton-transporting ATP synthase complex;1.98850842906896e-05!GO:0005874;microtubule;2.00267602263198e-05!GO:0005769;early endosome;2.01349172133337e-05!GO:0006084;acetyl-CoA metabolic process;2.2587020122481e-05!GO:0016567;protein ubiquitination;2.46011541782777e-05!GO:0005730;nucleolus;2.46573347650548e-05!GO:0009055;electron carrier activity;2.73102112993763e-05!GO:0030120;vesicle coat;3.00368841997447e-05!GO:0030662;coated vesicle membrane;3.00368841997447e-05!GO:0044432;endoplasmic reticulum part;3.36714869478579e-05!GO:0031252;leading edge;3.69339454300411e-05!GO:0007269;neurotransmitter secretion;4.02140341074657e-05!GO:0008047;enzyme activator activity;4.24156062718971e-05!GO:0022890;inorganic cation transmembrane transporter activity;5.13125173187035e-05!GO:0007268;synaptic transmission;5.57216930440521e-05!GO:0006897;endocytosis;6.39360601647918e-05!GO:0010324;membrane invagination;6.39360601647918e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.30117136141308e-05!GO:0008017;microtubule binding;7.40011763866639e-05!GO:0051128;regulation of cellular component organization and biogenesis;7.54659509512257e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.40122752113805e-05!GO:0015399;primary active transmembrane transporter activity;8.40122752113805e-05!GO:0008654;phospholipid biosynthetic process;8.78949906686703e-05!GO:0005096;GTPase activator activity;9.24847730619273e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.78238684188202e-05!GO:0006613;cotranslational protein targeting to membrane;9.9472526354672e-05!GO:0051187;cofactor catabolic process;0.000105953016896317!GO:0006888;ER to Golgi vesicle-mediated transport;0.000121243018884825!GO:0006403;RNA localization;0.000156823515705196!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000168819166382999!GO:0045055;regulated secretory pathway;0.000175685475430341!GO:0006650;glycerophospholipid metabolic process;0.000176274251790323!GO:0003712;transcription cofactor activity;0.000181619999550376!GO:0017038;protein import;0.00019080736270835!GO:0043492;ATPase activity, coupled to movement of substances;0.000192981979647936!GO:0030133;transport vesicle;0.000194689482358469!GO:0005789;endoplasmic reticulum membrane;0.000200372736706657!GO:0050657;nucleic acid transport;0.000200372736706657!GO:0051236;establishment of RNA localization;0.000200372736706657!GO:0050658;RNA transport;0.000200372736706657!GO:0000151;ubiquitin ligase complex;0.000213681625469151!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.00022283377202272!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000265779751874838!GO:0046467;membrane lipid biosynthetic process;0.0002800851740059!GO:0005085;guanyl-nucleotide exchange factor activity;0.000317106302469721!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000329306761241287!GO:0009056;catabolic process;0.000351059980016839!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000353929483648135!GO:0016301;kinase activity;0.000370183234112922!GO:0016568;chromatin modification;0.000409083685456963!GO:0000245;spliceosome assembly;0.00041942059631955!GO:0005643;nuclear pore;0.000457801962835647!GO:0046578;regulation of Ras protein signal transduction;0.000488729192091237!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000509014164977019!GO:0030384;phosphoinositide metabolic process;0.000510734863863129!GO:0016311;dephosphorylation;0.000528039750118358!GO:0030118;clathrin coat;0.000534393432149787!GO:0031072;heat shock protein binding;0.000596007141080839!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000604017819429717!GO:0030027;lamellipodium;0.000604017819429717!GO:0044453;nuclear membrane part;0.000604652712869291!GO:0003729;mRNA binding;0.000633881443705048!GO:0007019;microtubule depolymerization;0.000657046969926105!GO:0004721;phosphoprotein phosphatase activity;0.000671219948385581!GO:0001505;regulation of neurotransmitter levels;0.000688196182574287!GO:0019208;phosphatase regulator activity;0.00070405101581403!GO:0008601;protein phosphatase type 2A regulator activity;0.000762388678674763!GO:0005793;ER-Golgi intermediate compartment;0.000843571581855165!GO:0006643;membrane lipid metabolic process;0.00088246364522995!GO:0000159;protein phosphatase type 2A complex;0.000897144654809503!GO:0000902;cell morphogenesis;0.00089819666618109!GO:0032989;cellular structure morphogenesis;0.00089819666618109!GO:0051188;cofactor biosynthetic process;0.000915764356708136!GO:0005741;mitochondrial outer membrane;0.000921052250502738!GO:0051246;regulation of protein metabolic process;0.000921052250502738!GO:0016197;endosome transport;0.000922847554992487!GO:0008026;ATP-dependent helicase activity;0.000926903092613491!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000986532891000538!GO:0019902;phosphatase binding;0.00102351044259803!GO:0015980;energy derivation by oxidation of organic compounds;0.00103426054055024!GO:0022406;membrane docking;0.00104511809237812!GO:0048278;vesicle docking;0.00104511809237812!GO:0006752;group transfer coenzyme metabolic process;0.00111948149944153!GO:0043566;structure-specific DNA binding;0.00112341337720188!GO:0005773;vacuole;0.00114691594156418!GO:0006904;vesicle docking during exocytosis;0.0011613776002621!GO:0006470;protein amino acid dephosphorylation;0.00116247736546931!GO:0004386;helicase activity;0.00117757411841672!GO:0016791;phosphoric monoester hydrolase activity;0.00124469957257614!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.001317317592112!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00132711036705665!GO:0004674;protein serine/threonine kinase activity;0.00136236570832208!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00138025688726268!GO:0030427;site of polarized growth;0.00142296122351709!GO:0050767;regulation of neurogenesis;0.001439418404879!GO:0005516;calmodulin binding;0.00169663932000797!GO:0048167;regulation of synaptic plasticity;0.001724178512503!GO:0030426;growth cone;0.00172837417685715!GO:0003724;RNA helicase activity;0.00174001885096151!GO:0016564;transcription repressor activity;0.00178174608420164!GO:0006323;DNA packaging;0.00185752047640279!GO:0030054;cell junction;0.00185752047640279!GO:0006612;protein targeting to membrane;0.00188949213435529!GO:0019867;outer membrane;0.00191704838581033!GO:0031968;organelle outer membrane;0.00193581231150664!GO:0003697;single-stranded DNA binding;0.00196238618954153!GO:0016740;transferase activity;0.0019889860230046!GO:0016050;vesicle organization and biogenesis;0.0019889860230046!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00199781791037292!GO:0007266;Rho protein signal transduction;0.00199944873514785!GO:0046488;phosphatidylinositol metabolic process;0.00204488642558982!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0021560183176945!GO:0006891;intra-Golgi vesicle-mediated transport;0.00215860108212878!GO:0031114;regulation of microtubule depolymerization;0.00217433910152238!GO:0007026;negative regulation of microtubule depolymerization;0.00217433910152238!GO:0030424;axon;0.0021852726938425!GO:0019888;protein phosphatase regulator activity;0.00220717399169142!GO:0048523;negative regulation of cellular process;0.00233407173701488!GO:0004722;protein serine/threonine phosphatase activity;0.00243139035587772!GO:0051028;mRNA transport;0.00248333410584878!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00264442050837288!GO:0043623;cellular protein complex assembly;0.00264442050837288!GO:0006892;post-Golgi vesicle-mediated transport;0.00273432199697609!GO:0045786;negative regulation of progression through cell cycle;0.002770801478885!GO:0044456;synapse part;0.00277624680803216!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00278238201299593!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00278238201299593!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00278238201299593!GO:0031901;early endosome membrane;0.00288049911546849!GO:0048487;beta-tubulin binding;0.00289880250328539!GO:0005869;dynactin complex;0.00299648571994532!GO:0051087;chaperone binding;0.00301282264368591!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00307062576304628!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00307062576304628!GO:0004812;aminoacyl-tRNA ligase activity;0.00307062576304628!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00307062576304628!GO:0005938;cell cortex;0.00312700171735561!GO:0050803;regulation of synapse structure and activity;0.00313848588535299!GO:0031902;late endosome membrane;0.00323095508468187!GO:0005875;microtubule associated complex;0.00350134579388524!GO:0012506;vesicle membrane;0.00370026389717!GO:0009108;coenzyme biosynthetic process;0.00375483756804225!GO:0008154;actin polymerization and/or depolymerization;0.00382767757826102!GO:0043038;amino acid activation;0.00429650897270598!GO:0006418;tRNA aminoacylation for protein translation;0.00429650897270598!GO:0043039;tRNA aminoacylation;0.00429650897270598!GO:0006606;protein import into nucleus;0.00473926595664623!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00502358374540494!GO:0050839;cell adhesion molecule binding;0.00517254985847216!GO:0048500;signal recognition particle;0.00524093931578116!GO:0009966;regulation of signal transduction;0.00524093931578116!GO:0032011;ARF protein signal transduction;0.00524093931578116!GO:0032012;regulation of ARF protein signal transduction;0.00524093931578116!GO:0051170;nuclear import;0.00525177321349542!GO:0006259;DNA metabolic process;0.00528110066679862!GO:0051427;hormone receptor binding;0.00536504492821067!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00546840037790264!GO:0043209;myelin sheath;0.00546840037790264!GO:0004667;prostaglandin-D synthase activity;0.00546840037790264!GO:0050802;circadian sleep/wake cycle, sleep;0.00546840037790264!GO:0022410;circadian sleep/wake cycle process;0.00546840037790264!GO:0042749;regulation of circadian sleep/wake cycle;0.00546840037790264!GO:0030660;Golgi-associated vesicle membrane;0.00558574414159522!GO:0051168;nuclear export;0.0056095832665911!GO:0043021;ribonucleoprotein binding;0.00573966638186526!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00585597213359728!GO:0019198;transmembrane receptor protein phosphatase activity;0.00585597213359728!GO:0046474;glycerophospholipid biosynthetic process;0.00608245550148489!GO:0006644;phospholipid metabolic process;0.00608625388136887!GO:0016126;sterol biosynthetic process;0.00613011277857598!GO:0006607;NLS-bearing substrate import into nucleus;0.00623537107844778!GO:0005813;centrosome;0.00629802352221115!GO:0003714;transcription corepressor activity;0.0063179121058737!GO:0065002;intracellular protein transport across a membrane;0.00637358680323024!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00638582354052945!GO:0048699;generation of neurons;0.00668824935180821!GO:0051261;protein depolymerization;0.00683342095838295!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0069696824162173!GO:0055083;monovalent inorganic anion homeostasis;0.0069696824162173!GO:0055064;chloride ion homeostasis;0.0069696824162173!GO:0030644;cellular chloride ion homeostasis;0.0069696824162173!GO:0043087;regulation of GTPase activity;0.00717475156370684!GO:0005774;vacuolar membrane;0.0076397308103524!GO:0007272;ensheathment of neurons;0.00772204358501071!GO:0008366;axon ensheathment;0.00772204358501071!GO:0050811;GABA receptor binding;0.00787087602511516!GO:0005839;proteasome core complex (sensu Eukaryota);0.00789632327115168!GO:0030532;small nuclear ribonucleoprotein complex;0.00794411678823569!GO:0044433;cytoplasmic vesicle part;0.00797963806251096!GO:0030258;lipid modification;0.00806105846819823!GO:0030658;transport vesicle membrane;0.00807880297075721!GO:0005048;signal sequence binding;0.00811487128742801!GO:0016070;RNA metabolic process;0.0081340502821616!GO:0007017;microtubule-based process;0.00840967605543706!GO:0051920;peroxiredoxin activity;0.00861497176039934!GO:0005099;Ras GTPase activator activity;0.0088496915015519!GO:0035257;nuclear hormone receptor binding;0.00908229683527515!GO:0000323;lytic vacuole;0.00918289549592049!GO:0005764;lysosome;0.00918289549592049!GO:0019903;protein phosphatase binding;0.00940399193492584!GO:0031109;microtubule polymerization or depolymerization;0.0106000873862326!GO:0042578;phosphoric ester hydrolase activity;0.0106604575191076!GO:0006414;translational elongation;0.0107011433229365!GO:0022008;neurogenesis;0.0107079853817322!GO:0001508;regulation of action potential;0.0107269867632206!GO:0009117;nucleotide metabolic process;0.0108322529648573!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0108966718006896!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0109251918637189!GO:0045047;protein targeting to ER;0.0109251918637189!GO:0042254;ribosome biogenesis and assembly;0.0110492172779496!GO:0048519;negative regulation of biological process;0.0112153165353176!GO:0044448;cell cortex part;0.0112153165353176!GO:0003746;translation elongation factor activity;0.0116828660081036!GO:0030137;COPI-coated vesicle;0.012306295811884!GO:0051540;metal cluster binding;0.0124085940755536!GO:0051536;iron-sulfur cluster binding;0.0124085940755536!GO:0030742;GTP-dependent protein binding;0.0124789826499265!GO:0008186;RNA-dependent ATPase activity;0.0127348448427029!GO:0008180;signalosome;0.0129252173341466!GO:0003713;transcription coactivator activity;0.0131913448282325!GO:0005815;microtubule organizing center;0.0134264393611528!GO:0019904;protein domain specific binding;0.0135857674541847!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0142352316441715!GO:0030867;rough endoplasmic reticulum membrane;0.014508298485406!GO:0001578;microtubule bundle formation;0.014988964714025!GO:0030182;neuron differentiation;0.0150548313031816!GO:0006887;exocytosis;0.0150841398436037!GO:0016363;nuclear matrix;0.0152502680579023!GO:0000314;organellar small ribosomal subunit;0.0152638015997124!GO:0005763;mitochondrial small ribosomal subunit;0.0152638015997124!GO:0005791;rough endoplasmic reticulum;0.0153242065555255!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0154509429178313!GO:0045296;cadherin binding;0.0154509429178313!GO:0016079;synaptic vesicle exocytosis;0.0155676076458661!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0162569033037339!GO:0006818;hydrogen transport;0.017308488651921!GO:0046489;phosphoinositide biosynthetic process;0.0175989512708793!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.01779096052487!GO:0006665;sphingolipid metabolic process;0.017802127360949!GO:0007034;vacuolar transport;0.017802127360949!GO:0030041;actin filament polymerization;0.0178929479839281!GO:0030132;clathrin coat of coated pit;0.0181005980939635!GO:0019887;protein kinase regulator activity;0.018149444612467!GO:0035035;histone acetyltransferase binding;0.0185756662110882!GO:0019783;small conjugating protein-specific protease activity;0.0185919838663222!GO:0005092;GDP-dissociation inhibitor activity;0.0186806887853713!GO:0004298;threonine endopeptidase activity;0.0189916644175909!GO:0006695;cholesterol biosynthetic process;0.0189916644175909!GO:0008312;7S RNA binding;0.0189916644175909!GO:0000209;protein polyubiquitination;0.0191457693577299!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0191457693577299!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0191457693577299!GO:0015629;actin cytoskeleton;0.0194898408161931!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0195719359501508!GO:0008610;lipid biosynthetic process;0.020099202852733!GO:0006661;phosphatidylinositol biosynthetic process;0.0203778562796335!GO:0000287;magnesium ion binding;0.020962275060507!GO:0046930;pore complex;0.0211960829785045!GO:0030659;cytoplasmic vesicle membrane;0.0216349471571596!GO:0008250;oligosaccharyl transferase complex;0.0216349471571596!GO:0004683;calmodulin-dependent protein kinase activity;0.0222388638607622!GO:0008088;axon cargo transport;0.0225013931968437!GO:0005868;cytoplasmic dynein complex;0.022805061885287!GO:0035258;steroid hormone receptor binding;0.0228893199480199!GO:0005885;Arp2/3 protein complex;0.0230377230218415!GO:0006402;mRNA catabolic process;0.0230377230218415!GO:0005765;lysosomal membrane;0.0233192740526406!GO:0000904;cellular morphogenesis during differentiation;0.0233865631689186!GO:0004843;ubiquitin-specific protease activity;0.0234087942133325!GO:0030030;cell projection organization and biogenesis;0.0234446734934659!GO:0048858;cell projection morphogenesis;0.0234446734934659!GO:0032990;cell part morphogenesis;0.0234446734934659!GO:0015992;proton transport;0.0237208903856142!GO:0030125;clathrin vesicle coat;0.0248126881026022!GO:0030665;clathrin coated vesicle membrane;0.0248126881026022!GO:0044437;vacuolar part;0.0251867287430026!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0251932647793343!GO:0043025;cell soma;0.025275976335232!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.025567686747915!GO:0019894;kinesin binding;0.025762960870276!GO:0031371;ubiquitin conjugating enzyme complex;0.0261564563106089!GO:0008139;nuclear localization sequence binding;0.0268164125339083!GO:0033673;negative regulation of kinase activity;0.0269176860136611!GO:0006469;negative regulation of protein kinase activity;0.0269176860136611!GO:0000062;acyl-CoA binding;0.0269945214945457!GO:0045211;postsynaptic membrane;0.0272266340599466!GO:0005100;Rho GTPase activator activity;0.0274298577568302!GO:0004221;ubiquitin thiolesterase activity;0.0275938788052953!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0278123189366878!GO:0031124;mRNA 3'-end processing;0.0278365948197766!GO:0007611;learning and/or memory;0.0280245518603916!GO:0004004;ATP-dependent RNA helicase activity;0.0291290940089551!GO:0000059;protein import into nucleus, docking;0.0315253062489484!GO:0043681;protein import into mitochondrion;0.0315775431535535!GO:0048667;neuron morphogenesis during differentiation;0.0322071819021902!GO:0048812;neurite morphogenesis;0.0322071819021902!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0325534993195251!GO:0033043;regulation of organelle organization and biogenesis;0.0325534993195251!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0327121609217056!GO:0048666;neuron development;0.0327121609217056!GO:0048168;regulation of neuronal synaptic plasticity;0.0329387076628216!GO:0042026;protein refolding;0.0330345653897031!GO:0006376;mRNA splice site selection;0.0334227356414284!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0334227356414284!GO:0009165;nucleotide biosynthetic process;0.0336860813664158!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0344536759707382!GO:0001726;ruffle;0.0349713762786234!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0350262118357194!GO:0033130;acetylcholine receptor binding;0.0353342793649094!GO:0031175;neurite development;0.0356517202119706!GO:0019911;structural constituent of myelin sheath;0.0357699281746987!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0362353034514547!GO:0051276;chromosome organization and biogenesis;0.0367986655605158!GO:0003711;transcription elongation regulator activity;0.0369646362423918!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0369646362423918!GO:0016859;cis-trans isomerase activity;0.0388867455535718!GO:0051539;4 iron, 4 sulfur cluster binding;0.0394309293281333!GO:0006595;polyamine metabolic process;0.0394538477001166!GO:0019207;kinase regulator activity;0.0403727176843234!GO:0051287;NAD binding;0.0408383088456118!GO:0016579;protein deubiquitination;0.0408383088456118!GO:0030663;COPI coated vesicle membrane;0.0408383088456118!GO:0030126;COPI vesicle coat;0.0408383088456118!GO:0046839;phospholipid dephosphorylation;0.0408383088456118!GO:0030119;AP-type membrane coat adaptor complex;0.0408625108769813!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0410361986794884!GO:0008022;protein C-terminus binding;0.0411374542367915!GO:0004576;oligosaccharyl transferase activity;0.0417924615056329!GO:0006333;chromatin assembly or disassembly;0.0424565601125905!GO:0005762;mitochondrial large ribosomal subunit;0.0425260049447727!GO:0000315;organellar large ribosomal subunit;0.0425260049447727!GO:0007158;neuron adhesion;0.0427734842659712!GO:0051252;regulation of RNA metabolic process;0.0428740192777738!GO:0003725;double-stranded RNA binding;0.0431782760610012!GO:0042670;retinal cone cell differentiation;0.0431782760610012!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0431782760610012!GO:0046549;retinal cone cell development;0.0431782760610012!GO:0005952;cAMP-dependent protein kinase complex;0.0431782760610012!GO:0007041;lysosomal transport;0.0434817320320567!GO:0051020;GTPase binding;0.0436411918902311!GO:0042995;cell projection;0.0438349943516906!GO:0035023;regulation of Rho protein signal transduction;0.0441942456896556!GO:0051348;negative regulation of transferase activity;0.0442152403181243!GO:0006672;ceramide metabolic process;0.044762230295749!GO:0006399;tRNA metabolic process;0.0447799282024869!GO:0030911;TPR domain binding;0.0459535123610247!GO:0009066;aspartate family amino acid metabolic process;0.046109566735161!GO:0004672;protein kinase activity;0.0464614894434327!GO:0009892;negative regulation of metabolic process;0.0469833419685783!GO:0030131;clathrin adaptor complex;0.0474488638135691!GO:0048488;synaptic vesicle endocytosis;0.0479425175317862!GO:0042552;myelination;0.0482788866905946!GO:0006611;protein export from nucleus;0.0484589906234591!GO:0006366;transcription from RNA polymerase II promoter;0.0485550420150871!GO:0006378;mRNA polyadenylation;0.0491581518238563!GO:0043407;negative regulation of MAP kinase activity;0.0494162432466758 | |||
|sample_id=10040 | |sample_id=10040 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=frontal lobe | |sample_tissue=frontal lobe | ||
|top_motifs=NHLH1,2:4.36644742416;REST:4.3334838519;EGR1..3:4.05452705296;PRRX1,2:4.03047404809;AHR_ARNT_ARNT2:3.97434103742;MYFfamily:3.79623220476;ZFP161:3.74953730268;ATF2:3.5953442607;MTE{core}:3.47046669052;MED-1{core}:3.46217452004;ZBTB6:3.28627739565;CUX2:3.2703854288;PAX5:3.24461796749;TFAP2B:3.12020606022;RREB1:3.10911539055;RFX1:3.10673315327;MTF1:3.06848865945;GTF2I:2.8949070556;PRDM1:2.86168550943;DBP:2.83329871185;HOXA9_MEIS1:2.81819842167;HIC1:2.78589852958;MZF1:2.69196057781;SOX2:2.6870402346;SMAD1..7,9:2.57830114451;POU5F1:2.56415675469;OCT4_SOX2{dimer}:2.55407577611;BREu{core}:2.54111893288;NKX3-2:2.48750368276;TGIF1:2.4424238565;FOXM1:2.40658887505;SOX5:2.40496055458;JUN:2.37183092951;LMO2:2.33897330349;NANOG:2.32169226921;POU6F1:2.29366543084;NKX2-3_NKX2-5:2.24381381062;GFI1B:2.24003843705;RFX2..5_RFXANK_RFXAP:2.21798473802;PATZ1:2.18607326108;MAZ:2.1565669529;SOX{8,9,10}:2.10185914257;SOX17:2.08468240054;MAFB:2.05389288913;PAX6:2.02130886926;TFDP1:2.00479403135;NRF1:1.9803220911;CDC5L:1.9226632782;LEF1_TCF7_TCF7L1,2:1.8519322718;GCM1,2:1.82222963345;NFIX:1.80882641992;HMGA1,2:1.76793381233;POU3F1..4:1.69314022603;GATA4:1.62188973256;ARID5B:1.60669669463;KLF4:1.53677183685;HBP1_HMGB_SSRP1_UBTF:1.53095667243;HOX{A4,D4}:1.49906818048;FOXQ1:1.49363056474;NFIL3:1.43982375976;ESRRA:1.3801257512;FOX{F1,F2,J1}:1.34801783891;EBF1:1.34172914525;ZNF238:1.33722278569;MYOD1:1.32714060005;RORA:1.32704763169;RBPJ:1.32559945285;XBP1:1.29295167949;STAT1,3:1.20099228169;EP300:1.19664411819;ADNP_IRX_SIX_ZHX:1.14659445785;GTF2A1,2:1.13257810509;ALX1:1.10526844263;SP1:1.06520536994;SREBF1,2:1.05321241695;ZNF143:0.993249993025;ZNF384:0.990333971698;MEF2{A,B,C,D}:0.97065824204;ZNF423:0.911062805261;CREB1:0.889073714529;CRX:0.870062756422;BPTF:0.830507970396;YY1:0.82640216312;FOXP1:0.812332313587;HAND1,2:0.764106046578;ZEB1:0.760328574761;TLX2:0.753457064763;SPZ1:0.730456342579;FOXN1:0.726833742565;GFI1:0.708937335611;FOXP3:0.662947121565;TFAP2{A,C}:0.637810863842;NKX6-1,2:0.621551987949;T:0.595969222993;TBX4,5:0.592156313793;TLX1..3_NFIC{dimer}:0.580264604919;MYBL2:0.563458681695;PAX4:0.544757381719;ATF4:0.509610048254;TEF:0.491339340339;ATF5_CREB3:0.480763942281;FOX{D1,D2}:0.478440158514;NR3C1:0.471948838427;GZF1:0.41815075244;HMX1:0.383794983898;FOXA2:0.344022361733;POU1F1:0.34087678842;XCPE1{core}:0.288664239914;ONECUT1,2:0.25378044901;ZIC1..3:0.209434440737;NANOG{mouse}:0.161565846431;PBX1:0.130706869801;VSX1,2:0.129003668653;AR:0.117437876365;FOX{I1,J2}:0.0987748399429;IRF7:0.0958556257525;bHLH_family:0.0708969777238;IKZF2:0.0537803680308;PDX1:0.0201453790078;NFY{A,B,C}:0.0196793982634;PAX2:-0.00582401929854;PAX1,9:-0.0831193862219;IKZF1:-0.0841174151664;FOXD3:-0.0844575622644;NFE2L2:-0.108384483949;NFATC1..3:-0.120786807483;HOX{A6,A7,B6,B7}:-0.196265303897;PAX3,7:-0.222318324637;SNAI1..3:-0.25387378925;DMAP1_NCOR{1,2}_SMARC:-0.303690368875;FOXO1,3,4:-0.334529362205;GATA6:-0.339211768081;FOXL1:-0.33958806633;TAL1_TCF{3,4,12}:-0.377143447772;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.382762942695;TFAP4:-0.385820987779;ZNF148:-0.39133214086;IRF1,2:-0.410833564275;LHX3,4:-0.430566192667;TOPORS:-0.449595286768;NFE2L1:-0.472369790054;SPI1:-0.478377939773;PAX8:-0.490571066115;NR5A1,2:-0.491702737627;NFE2:-0.497520414934;UFEwm:-0.4998825763;HSF1,2:-0.594154251802;SPIB:-0.693196077045;NR1H4:-0.706177585555;CEBPA,B_DDIT3:-0.727244234384;ATF6:-0.749282035981;STAT2,4,6:-0.756627899684;ETS1,2:-0.785050764533;HNF1A:-0.820861924115;ELK1,4_GABP{A,B1}:-0.85683801138;FOSL2:-0.868170834738;TFCP2:-0.873595749619;ZBTB16:-0.893920693787;TP53:-0.903396860347;ESR1:-0.956936473137;BACH2:-0.98088883525;FOS_FOS{B,L1}_JUN{B,D}:-1.03045554647;GLI1..3:-1.04815116677;TEAD1:-1.05384641573;PPARG:-1.14332568313;HNF4A_NR2F1,2:-1.16532093389;NKX3-1:-1.18700953705;E2F1..5:-1.20670294052;HIF1A:-1.21321164898;RUNX1..3:-1.22190324933;NFKB1_REL_RELA:-1.28304261586;NKX2-2,8:-1.28576002978;SRF:-1.29998067621;HLF:-1.31076685081;TBP:-1.38557065667;MYB:-1.39720470679;RXR{A,B,G}:-1.40006108713;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.40336570584;ELF1,2,4:-1.43017763776;NKX2-1,4:-1.48102484123;EVI1:-1.56517849776;ALX4:-1.61669742808;RXRA_VDR{dimer}:-1.70967794693;CDX1,2,4:-1.72671605279;AIRE:-1.74388711563;STAT5{A,B}:-1.75239024104;POU2F1..3:-1.77773955899;PITX1..3:-1.8013910043;EN1,2:-1.8067620792;HES1:-2.14946481019;HOX{A5,B5}:-2.24702718931;NR6A1:-3.24728793109 | |top_motifs=NHLH1,2:4.36644742416;REST:4.3334838519;EGR1..3:4.05452705296;PRRX1,2:4.03047404809;AHR_ARNT_ARNT2:3.97434103742;MYFfamily:3.79623220476;ZFP161:3.74953730268;ATF2:3.5953442607;MTE{core}:3.47046669052;MED-1{core}:3.46217452004;ZBTB6:3.28627739565;CUX2:3.2703854288;PAX5:3.24461796749;TFAP2B:3.12020606022;RREB1:3.10911539055;RFX1:3.10673315327;MTF1:3.06848865945;GTF2I:2.8949070556;PRDM1:2.86168550943;DBP:2.83329871185;HOXA9_MEIS1:2.81819842167;HIC1:2.78589852958;MZF1:2.69196057781;SOX2:2.6870402346;SMAD1..7,9:2.57830114451;POU5F1:2.56415675469;OCT4_SOX2{dimer}:2.55407577611;BREu{core}:2.54111893288;NKX3-2:2.48750368276;TGIF1:2.4424238565;FOXM1:2.40658887505;SOX5:2.40496055458;JUN:2.37183092951;LMO2:2.33897330349;NANOG:2.32169226921;POU6F1:2.29366543084;NKX2-3_NKX2-5:2.24381381062;GFI1B:2.24003843705;RFX2..5_RFXANK_RFXAP:2.21798473802;PATZ1:2.18607326108;MAZ:2.1565669529;SOX{8,9,10}:2.10185914257;SOX17:2.08468240054;MAFB:2.05389288913;PAX6:2.02130886926;TFDP1:2.00479403135;NRF1:1.9803220911;CDC5L:1.9226632782;LEF1_TCF7_TCF7L1,2:1.8519322718;GCM1,2:1.82222963345;NFIX:1.80882641992;HMGA1,2:1.76793381233;POU3F1..4:1.69314022603;GATA4:1.62188973256;ARID5B:1.60669669463;KLF4:1.53677183685;HBP1_HMGB_SSRP1_UBTF:1.53095667243;HOX{A4,D4}:1.49906818048;FOXQ1:1.49363056474;NFIL3:1.43982375976;ESRRA:1.3801257512;FOX{F1,F2,J1}:1.34801783891;EBF1:1.34172914525;ZNF238:1.33722278569;MYOD1:1.32714060005;RORA:1.32704763169;RBPJ:1.32559945285;XBP1:1.29295167949;STAT1,3:1.20099228169;EP300:1.19664411819;ADNP_IRX_SIX_ZHX:1.14659445785;GTF2A1,2:1.13257810509;ALX1:1.10526844263;SP1:1.06520536994;SREBF1,2:1.05321241695;ZNF143:0.993249993025;ZNF384:0.990333971698;MEF2{A,B,C,D}:0.97065824204;ZNF423:0.911062805261;CREB1:0.889073714529;CRX:0.870062756422;BPTF:0.830507970396;YY1:0.82640216312;FOXP1:0.812332313587;HAND1,2:0.764106046578;ZEB1:0.760328574761;TLX2:0.753457064763;SPZ1:0.730456342579;FOXN1:0.726833742565;GFI1:0.708937335611;FOXP3:0.662947121565;TFAP2{A,C}:0.637810863842;NKX6-1,2:0.621551987949;T:0.595969222993;TBX4,5:0.592156313793;TLX1..3_NFIC{dimer}:0.580264604919;MYBL2:0.563458681695;PAX4:0.544757381719;ATF4:0.509610048254;TEF:0.491339340339;ATF5_CREB3:0.480763942281;FOX{D1,D2}:0.478440158514;NR3C1:0.471948838427;GZF1:0.41815075244;HMX1:0.383794983898;FOXA2:0.344022361733;POU1F1:0.34087678842;XCPE1{core}:0.288664239914;ONECUT1,2:0.25378044901;ZIC1..3:0.209434440737;NANOG{mouse}:0.161565846431;PBX1:0.130706869801;VSX1,2:0.129003668653;AR:0.117437876365;FOX{I1,J2}:0.0987748399429;IRF7:0.0958556257525;bHLH_family:0.0708969777238;IKZF2:0.0537803680308;PDX1:0.0201453790078;NFY{A,B,C}:0.0196793982634;PAX2:-0.00582401929854;PAX1,9:-0.0831193862219;IKZF1:-0.0841174151664;FOXD3:-0.0844575622644;NFE2L2:-0.108384483949;NFATC1..3:-0.120786807483;HOX{A6,A7,B6,B7}:-0.196265303897;PAX3,7:-0.222318324637;SNAI1..3:-0.25387378925;DMAP1_NCOR{1,2}_SMARC:-0.303690368875;FOXO1,3,4:-0.334529362205;GATA6:-0.339211768081;FOXL1:-0.33958806633;TAL1_TCF{3,4,12}:-0.377143447772;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.382762942695;TFAP4:-0.385820987779;ZNF148:-0.39133214086;IRF1,2:-0.410833564275;LHX3,4:-0.430566192667;TOPORS:-0.449595286768;NFE2L1:-0.472369790054;SPI1:-0.478377939773;PAX8:-0.490571066115;NR5A1,2:-0.491702737627;NFE2:-0.497520414934;UFEwm:-0.4998825763;HSF1,2:-0.594154251802;SPIB:-0.693196077045;NR1H4:-0.706177585555;CEBPA,B_DDIT3:-0.727244234384;ATF6:-0.749282035981;STAT2,4,6:-0.756627899684;ETS1,2:-0.785050764533;HNF1A:-0.820861924115;ELK1,4_GABP{A,B1}:-0.85683801138;FOSL2:-0.868170834738;TFCP2:-0.873595749619;ZBTB16:-0.893920693787;TP53:-0.903396860347;ESR1:-0.956936473137;BACH2:-0.98088883525;FOS_FOS{B,L1}_JUN{B,D}:-1.03045554647;GLI1..3:-1.04815116677;TEAD1:-1.05384641573;PPARG:-1.14332568313;HNF4A_NR2F1,2:-1.16532093389;NKX3-1:-1.18700953705;E2F1..5:-1.20670294052;HIF1A:-1.21321164898;RUNX1..3:-1.22190324933;NFKB1_REL_RELA:-1.28304261586;NKX2-2,8:-1.28576002978;SRF:-1.29998067621;HLF:-1.31076685081;TBP:-1.38557065667;MYB:-1.39720470679;RXR{A,B,G}:-1.40006108713;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.40336570584;ELF1,2,4:-1.43017763776;NKX2-1,4:-1.48102484123;EVI1:-1.56517849776;ALX4:-1.61669742808;RXRA_VDR{dimer}:-1.70967794693;CDX1,2,4:-1.72671605279;AIRE:-1.74388711563;STAT5{A,B}:-1.75239024104;POU2F1..3:-1.77773955899;PITX1..3:-1.8013910043;EN1,2:-1.8067620792;HES1:-2.14946481019;HOX{A5,B5}:-2.24702718931;NR6A1:-3.24728793109 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10040-101F4;search_select_hide=table117:FF:10040-101F4 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | frontal lobe, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10647 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10647
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10647
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0377 |
| 10 | 10 | 0.0335 |
| 100 | 100 | 0.3 |
| 101 | 101 | 0.674 |
| 102 | 102 | 0.781 |
| 103 | 103 | 0.219 |
| 104 | 104 | 0.136 |
| 105 | 105 | 0.299 |
| 106 | 106 | 0.0439 |
| 107 | 107 | 0.115 |
| 108 | 108 | 0.806 |
| 109 | 109 | 0.00725 |
| 11 | 11 | 0.0148 |
| 110 | 110 | 0.0462 |
| 111 | 111 | 0.0624 |
| 112 | 112 | 0.292 |
| 113 | 113 | 0.604 |
| 114 | 114 | 0.0936 |
| 115 | 115 | 0.89 |
| 116 | 116 | 0.148 |
| 117 | 117 | 0.0107 |
| 118 | 118 | 0.116 |
| 119 | 119 | 0.0942 |
| 12 | 12 | 0.684 |
| 120 | 120 | 0.162 |
| 121 | 121 | 0.587 |
| 122 | 122 | 0.673 |
| 123 | 123 | 0.679 |
| 124 | 124 | 0.0379 |
| 125 | 125 | 0.215 |
| 126 | 126 | 0.0316 |
| 127 | 127 | 0.465 |
| 128 | 128 | 0.14 |
| 129 | 129 | 0.547 |
| 13 | 13 | 0.00151 |
| 130 | 130 | 0.475 |
| 131 | 131 | 0.0647 |
| 132 | 132 | 0.767 |
| 133 | 133 | 0.00497 |
| 134 | 134 | 0.303 |
| 135 | 135 | 0.193 |
| 136 | 136 | 0.00943 |
| 137 | 137 | 0.785 |
| 138 | 138 | 0.866 |
| 139 | 139 | 0.0742 |
| 14 | 14 | 0.846 |
| 140 | 140 | 0.0792 |
| 141 | 141 | 0.273 |
| 142 | 142 | 0.764 |
| 143 | 143 | 0.0194 |
| 144 | 144 | 0.891 |
| 145 | 145 | 0.0842 |
| 146 | 146 | 0.586 |
| 147 | 147 | 0.936 |
| 148 | 148 | 0.154 |
| 149 | 149 | 0.284 |
| 15 | 15 | 0.0739 |
| 150 | 150 | 0.173 |
| 151 | 151 | 0.622 |
| 152 | 152 | 0.114 |
| 153 | 153 | 0.775 |
| 154 | 154 | 0.571 |
| 155 | 155 | 0.462 |
| 156 | 156 | 0.428 |
| 157 | 157 | 0.433 |
| 158 | 158 | 0.605 |
| 159 | 159 | 0.0412 |
| 16 | 16 | 0.0722 |
| 160 | 160 | 0.185 |
| 161 | 161 | 0.198 |
| 162 | 162 | 0.985 |
| 163 | 163 | 0.776 |
| 164 | 164 | 0.0205 |
| 165 | 165 | 0.0403 |
| 166 | 166 | 0.847 |
| 167 | 167 | 0.422 |
| 168 | 168 | 0.672 |
| 169 | 169 | 0.00743 |
| 17 | 17 | 0.147 |
| 18 | 18 | 0.19 |
| 19 | 19 | 0.182 |
| 2 | 2 | 0.947 |
| 20 | 20 | 0.104 |
| 21 | 21 | 0.07 |
| 22 | 22 | 0.219 |
| 23 | 23 | 0.388 |
| 24 | 24 | 0.1 |
| 25 | 25 | 0.48 |
| 26 | 26 | 1.14024e-4 |
| 27 | 27 | 0.916 |
| 28 | 28 | 0.691 |
| 29 | 29 | 0.0139 |
| 3 | 3 | 0.0314 |
| 30 | 30 | 0.686 |
| 31 | 31 | 0.885 |
| 32 | 32 | 0.0205 |
| 33 | 33 | 0.0735 |
| 34 | 34 | 0.706 |
| 35 | 35 | 0.498 |
| 36 | 36 | 0.115 |
| 37 | 37 | 0.0383 |
| 38 | 38 | 0.302 |
| 39 | 39 | 0.218 |
| 4 | 4 | 0.866 |
| 40 | 40 | 0.0483 |
| 41 | 41 | 0.385 |
| 42 | 42 | 0.206 |
| 43 | 43 | 0.102 |
| 44 | 44 | 0.0754 |
| 45 | 45 | 0.759 |
| 46 | 46 | 0.0592 |
| 47 | 47 | 0.0614 |
| 48 | 48 | 0.0546 |
| 49 | 49 | 0.135 |
| 5 | 5 | 0.501 |
| 50 | 50 | 0.342 |
| 51 | 51 | 0.508 |
| 52 | 52 | 0.579 |
| 53 | 53 | 0.929 |
| 54 | 54 | 0.452 |
| 55 | 55 | 0.39 |
| 56 | 56 | 0.459 |
| 57 | 57 | 0.239 |
| 58 | 58 | 0.31 |
| 59 | 59 | 0.116 |
| 6 | 6 | 0.592 |
| 60 | 60 | 0.0705 |
| 61 | 61 | 0.0726 |
| 62 | 62 | 0.164 |
| 63 | 63 | 0.15 |
| 64 | 64 | 0.201 |
| 65 | 65 | 0.241 |
| 66 | 66 | 0.295 |
| 67 | 67 | 0.331 |
| 68 | 68 | 0.361 |
| 69 | 69 | 0.269 |
| 7 | 7 | 0.0618 |
| 70 | 70 | 0.0238 |
| 71 | 71 | 0.0113 |
| 72 | 72 | 0.484 |
| 73 | 73 | 0.04 |
| 74 | 74 | 0.767 |
| 75 | 75 | 0.033 |
| 76 | 76 | 0.438 |
| 77 | 77 | 0.186 |
| 78 | 78 | 0.00297 |
| 79 | 79 | 0.143 |
| 8 | 8 | 0.0491 |
| 80 | 80 | 0.912 |
| 81 | 81 | 0.559 |
| 82 | 82 | 0.461 |
| 83 | 83 | 0.162 |
| 84 | 84 | 0.638 |
| 85 | 85 | 0.184 |
| 86 | 86 | 0.209 |
| 87 | 87 | 0.00343 |
| 88 | 88 | 0.848 |
| 89 | 89 | 0.514 |
| 9 | 9 | 0.479 |
| 90 | 90 | 0.0523 |
| 91 | 91 | 0.458 |
| 92 | 92 | 0.438 |
| 93 | 93 | 0.714 |
| 94 | 94 | 0.0765 |
| 95 | 95 | 0.025 |
| 96 | 96 | 0.941 |
| 97 | 97 | 0.768 |
| 98 | 98 | 0.193 |
| 99 | 99 | 0.673 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10647
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001870 (frontal cortex)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010040 (human frontal lobe - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
