FF:10043-101F7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002370 | |DRA_sample_Accession=CAGE@SAMD00005030 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005030 | |||
|accession_numbers=CAGE;DRX008746;DRR009618;DRZ001043;DRZ002428;DRZ012393;DRZ013778 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057115;DRR062874;DRZ007950 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002370,UBERON:0000479,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0004177,UBERON:0005057,UBERON:0002530,UBERON:0005058,UBERON:0010317,UBERON:0000153,UBERON:0002390,UBERON:0000949,UBERON:0002193,UBERON:0002405,UBERON:0009113 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010043 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.77!594.12!TCF7;;chr4:109090075..109090095,-!p2@LEF1!2.33!214.53!LEF1;;chr4:109087445..109087463,-!p1@LEF1!2.26!180.51!LEF1;;chr3:18486354..18486377,-!p2@SATB1!2.17!180.89!SATB1;;chr1:151798546..151798590,-!p2@RORC!2.03!105.09!RORC;;chr3:18480217..18480239,-!p3@SATB1!2.00!98.45!SATB1;;chr8:60031619..60031676,-!p1@TOX!1.97!194.42!TOX;;chr5:133450365..133450444,+!p1@TCF7!1.86!306.77!TCF7;;chr17:37934365..37934387,-!p2@IKZF3!1.85!69.96!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.83!66.92!ATXN7;;chr5:133451347..133451358,+!p3@TCF7!1.82!65.12!TCF7;;chr20:21686317..21686350,+!p1@PAX1!1.79!60.83!PAX1;;chr7:50343634..50343717,+!p2@IKZF1!1.76!56.86!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!1.72!51.65!IRF8;;chr3:18487057..18487105,-!p4@SATB1!1.68!46.87!SATB1;;chr2:214015111..214015179,-!p1@IKZF2!1.65!76.60!IKZF2;;chr10:8096631..8096660,+!p1@GATA3!1.64!51.65!GATA3;;chr2:100759010..100759035,-!p1@AFF3!1.63!41.90!AFF3;;chr6:135502501..135502546,+!p1@MYB!1.62!48.60!MYB;;chrY:21906594..21906622,-!p1@KDM5D!1.61!39.48!KDM5D;;chr10:8096772..8096787,+!p2@GATA3!1.60!45.19!GATA3;;chr14:37131058..37131139,+!p1@PAX9!1.60!38.67!PAX9;;chr21:36421535..36421610,-!p2@RUNX1!1.59!129.74!RUNX1;;chr9:117150254..117150271,-!p1@AKNA!1.58!98.70!AKNA;;chr6:135502408..135502459,+!p2@MYB!1.58!42.65!MYB;;chr16:68119324..68119364,+!p1@NFATC3!1.57!155.75!NFATC3;;chr9:77112244..77112262,+!p1@RORB!1.55!38.30!RORB;;chr4:109090054..109090073,-!p7@LEF1!1.54!33.83!LEF1;;chr2:214013461..214013517,-!p6@IKZF2!1.52!32.34!IKZF2;;chr11:47400078..47400106,-!p1@SPI1!1.51!31.35!SPI1;;chr7:50344251..50344288,+!p3@IKZF1!1.51!31.29!IKZF1;;chr6:91006518..91006570,-!p1@BACH2!1.50!69.28!BACH2;;chr4:109087906..109087928,-!p12@LEF1!1.50!30.85!LEF1;;chr2:100759037..100759058,-!p2@AFF3!1.48!29.30!AFF3;;chr2:214014959..214015006,-!p4@IKZF2!1.47!28.74!IKZF2;;chr7:50348268..50348366,+!p4@IKZF1!1.47!28.43!IKZF1;;chr3:189507432..189507459,+!p1@TP63!1.46!28.00!TP63;;chr1:92949331..92949377,-!p2@GFI1!1.46!28.00!GFI1;;chr4:109089901..109089930,-!p3@LEF1!1.45!27.31!LEF1;;chr13:41593425..41593480,-!p1@ELF1!1.44!161.33!ELF1;;chr3:71355163..71355209,-!p5@FOXP1!1.44!36.44!FOXP1;;chr3:141868293..141868355,-!p2@TFDP2!1.43!218.94!TFDP2;;chr15:57210961..57211012,+!p3@TCF12!1.43!81.38!TCF12;;chr6:391743..391759,+!p1@IRF4!1.43!26.13!IRF4;;chr1:23857698..23857733,-!p1@E2F2!1.42!46.06!E2F2;;chr3:111314186..111314204,-!p1@ZBED2!1.41!24.83!ZBED2;;chr2:68592406..68592424,+!p1@PLEK!1.40!24.33!PLEK;;chr3:18480173..18480189,-!p6@SATB1!1.40!24.15!SATB1;;chr2:60778035..60778060,-!p4@BCL11A!1.39!27.87!BCL11A;;chr11:128392273..128392308,-!p2@ETS1!1.35!88.33!ETS1;;chr7:50344289..50344323,+!p1@IKZF1!1.35!21.54!IKZF1;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.86!HIF3A;;chr2:42795745..42795824,+!p1@MTA3!1.33!182.00!MTA3;;chr4:109090106..109090124,-!p10@LEF1!1.32!20.05!LEF1;;chr7:50343895..50343936,+!p5@IKZF1!1.32!19.86!IKZF1;;chr4:109086321..109086357,-!p16@LEF1!1.31!19.37!LEF1;;chr12:103351444..103351461,+!p1@ASCL1!1.26!17.01!ASCL1;;chr6:91006575..91006602,-!p2@BACH2!1.25!24.64!BACH2;;chr11:128392309..128392350,-!p3@ETS1!1.24!38.36!ETS1;;chr1:209979467..209979494,-!p1@IRF6!1.24!18.50!IRF6;;chr19:50922187..50922204,+!p1@SPIB!1.24!16.33!SPIB;;chr21:47063625..47063658,+!p1@PCBP3!1.23!69.09!PCBP3;;chr13:72441315..72441454,-!p1@DACH1!1.23!31.72!DACH1;;chr2:60781201..60781258,-!p3@BCL11A!1.23!15.89!BCL11A;;chr4:109086403..109086421,-!p19@LEF1!1.23!15.83!LEF1;;chr3:114819124..114819200,-!p3@ZBTB20!1.20!34.02!ZBTB20;;chr2:100758991..100759009,-!p3@AFF3!1.20!14.96!AFF3;;chr4:109089996..109090012,-!p5@LEF1!1.19!14.65!LEF1;;chr9:1050331..1050363,+!p1@DMRT2!1.19!14.65!DMRT2;;chr20:21686290..21686311,+!p2@PAX1!1.19!14.34!PAX1;;chr3:141747459..141747475,-!p1@TFDP2!1.18!115.71!TFDP2;;chr3:71179699..71179744,-!p2@FOXP1!1.18!104.78!FOXP1;;chr2:70142232..70142251,+!p1@MXD1!1.18!79.39!MXD1;;chr4:109088940..109089037,-!p4@LEF1!1.18!14.15!LEF1;;chr17:80797886..80797906,-!p1@ZNF750!1.17!13.78!ZNF750;;chr20:42543441..42543497,+!p1@TOX2!1.15!59.22!TOX2;;chr9:3525867..3525902,-!p3@RFX3!1.15!45.44!RFX3;;chr4:109087885..109087899,-!p23@LEF1!1.15!12.97!LEF1;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.91!IKZF3;;chr8:60031563..60031574,-!p7@TOX!1.13!12.54!TOX;;chr2:214015343..214015366,-!p3@IKZF2!1.13!12.41!IKZF2;;chr7:44143925..44143970,+!p1@AEBP1!1.12!269.96!AEBP1;;chr16:79634624..79634642,-!p1@MAF!1.12!47.43!MAF;;chr21:39870339..39870443,-!p1@ERG!1.12!12.17!ERG;;chr20:62680984..62680999,-!p1@SOX18!1.11!15.95!SOX18;;chr10:8095593..8095625,+!p3@GATA3!1.10!13.72!GATA3;;chr15:57025732..57025743,-!p6@ZNF280D!1.10!11.67!ZNF280D;;chr11:111249993..111250006,-!p1@POU2AF1!1.10!11.48!POU2AF1;;chr6:135502472..135502489,+!p3@MYB!1.08!10.93!MYB;;chr17:42295777..42295816,-!p7@UBTF!1.07!13.10!UBTF;;chr19:19729477..19729542,-!p1@PBX4!1.06!22.41!PBX4;;chr5:71803177..71803255,-!p1@ZNF366!1.06!10.49!ZNF366;;chr1:92951607..92951661,-!p1@GFI1!1.06!10.43!GFI1;;chr3:141747441..141747452,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| |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.77!594.12!TCF7;;chr4:109090075..109090095,-!p2@LEF1!2.33!214.53!LEF1;;chr4:109087445..109087463,-!p1@LEF1!2.26!180.51!LEF1;;chr3:18486354..18486377,-!p2@SATB1!2.17!180.89!SATB1;;chr1:151798546..151798590,-!p2@RORC!2.03!105.09!RORC;;chr3:18480217..18480239,-!p3@SATB1!2.00!98.45!SATB1;;chr8:60031619..60031676,-!p1@TOX!1.97!194.42!TOX;;chr5:133450365..133450444,+!p1@TCF7!1.86!306.77!TCF7;;chr17:37934365..37934387,-!p2@IKZF3!1.85!69.96!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.83!66.92!ATXN7;;chr5:133451347..133451358,+!p3@TCF7!1.82!65.12!TCF7;;chr20:21686317..21686350,+!p1@PAX1!1.79!60.83!PAX1;;chr7:50343634..50343717,+!p2@IKZF1!1.76!56.86!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!1.72!51.65!IRF8;;chr3:18487057..18487105,-!p4@SATB1!1.68!46.87!SATB1;;chr2:214015111..214015179,-!p1@IKZF2!1.65!76.60!IKZF2;;chr10:8096631..8096660,+!p1@GATA3!1.64!51.65!GATA3;;chr2:100759010..100759035,-!p1@AFF3!1.63!41.90!AFF3;;chr6:135502501..135502546,+!p1@MYB!1.62!48.60!MYB;;chrY:21906594..21906622,-!p1@KDM5D!1.61!39.48!KDM5D;;chr10:8096772..8096787,+!p2@GATA3!1.60!45.19!GATA3;;chr14:37131058..37131139,+!p1@PAX9!1.60!38.67!PAX9;;chr21:36421535..36421610,-!p2@RUNX1!1.59!129.74!RUNX1;;chr9:117150254..117150271,-!p1@AKNA!1.58!98.70!AKNA;;chr6:135502408..135502459,+!p2@MYB!1.58!42.65!MYB;;chr16:68119324..68119364,+!p1@NFATC3!1.57!155.75!NFATC3;;chr9:77112244..77112262,+!p1@RORB!1.55!38.30!RORB;;chr4:109090054..109090073,-!p7@LEF1!1.54!33.83!LEF1;;chr2:214013461..214013517,-!p6@IKZF2!1.52!32.34!IKZF2;;chr11:47400078..47400106,-!p1@SPI1!1.51!31.35!SPI1;;chr7:50344251..50344288,+!p3@IKZF1!1.51!31.29!IKZF1;;chr6:91006518..91006570,-!p1@BACH2!1.50!69.28!BACH2;;chr4:109087906..109087928,-!p12@LEF1!1.50!30.85!LEF1;;chr2:100759037..100759058,-!p2@AFF3!1.48!29.30!AFF3;;chr2:214014959..214015006,-!p4@IKZF2!1.47!28.74!IKZF2;;chr7:50348268..50348366,+!p4@IKZF1!1.47!28.43!IKZF1;;chr3:189507432..189507459,+!p1@TP63!1.46!28.00!TP63;;chr1:92949331..92949377,-!p2@GFI1!1.46!28.00!GFI1;;chr4:109089901..109089930,-!p3@LEF1!1.45!27.31!LEF1;;chr13:41593425..41593480,-!p1@ELF1!1.44!161.33!ELF1;;chr3:71355163..71355209,-!p5@FOXP1!1.44!36.44!FOXP1;;chr3:141868293..141868355,-!p2@TFDP2!1.43!218.94!TFDP2;;chr15:57210961..57211012,+!p3@TCF12!1.43!81.38!TCF12;;chr6:391743..391759,+!p1@IRF4!1.43!26.13!IRF4;;chr1:23857698..23857733,-!p1@E2F2!1.42!46.06!E2F2;;chr3:111314186..111314204,-!p1@ZBED2!1.41!24.83!ZBED2;;chr2:68592406..68592424,+!p1@PLEK!1.40!24.33!PLEK;;chr3:18480173..18480189,-!p6@SATB1!1.40!24.15!SATB1;;chr2:60778035..60778060,-!p4@BCL11A!1.39!27.87!BCL11A;;chr11:128392273..128392308,-!p2@ETS1!1.35!88.33!ETS1;;chr7:50344289..50344323,+!p1@IKZF1!1.35!21.54!IKZF1;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.86!HIF3A;;chr2:42795745..42795824,+!p1@MTA3!1.33!182.00!MTA3;;chr4:109090106..109090124,-!p10@LEF1!1.32!20.05!LEF1;;chr7:50343895..50343936,+!p5@IKZF1!1.32!19.86!IKZF1;;chr4:109086321..109086357,-!p16@LEF1!1.31!19.37!LEF1;;chr12:103351444..103351461,+!p1@ASCL1!1.26!17.01!ASCL1;;chr6:91006575..91006602,-!p2@BACH2!1.25!24.64!BACH2;;chr11:128392309..128392350,-!p3@ETS1!1.24!38.36!ETS1;;chr1:209979467..209979494,-!p1@IRF6!1.24!18.50!IRF6;;chr19:50922187..50922204,+!p1@SPIB!1.24!16.33!SPIB;;chr21:47063625..47063658,+!p1@PCBP3!1.23!69.09!PCBP3;;chr13:72441315..72441454,-!p1@DACH1!1.23!31.72!DACH1;;chr2:60781201..60781258,-!p3@BCL11A!1.23!15.89!BCL11A;;chr4:109086403..109086421,-!p19@LEF1!1.23!15.83!LEF1;;chr3:114819124..114819200,-!p3@ZBTB20!1.20!34.02!ZBTB20;;chr2:100758991..100759009,-!p3@AFF3!1.20!14.96!AFF3;;chr4:109089996..109090012,-!p5@LEF1!1.19!14.65!LEF1;;chr9:1050331..1050363,+!p1@DMRT2!1.19!14.65!DMRT2;;chr20:21686290..21686311,+!p2@PAX1!1.19!14.34!PAX1;;chr3:141747459..141747475,-!p1@TFDP2!1.18!115.71!TFDP2;;chr3:71179699..71179744,-!p2@FOXP1!1.18!104.78!FOXP1;;chr2:70142232..70142251,+!p1@MXD1!1.18!79.39!MXD1;;chr4:109088940..109089037,-!p4@LEF1!1.18!14.15!LEF1;;chr17:80797886..80797906,-!p1@ZNF750!1.17!13.78!ZNF750;;chr20:42543441..42543497,+!p1@TOX2!1.15!59.22!TOX2;;chr9:3525867..3525902,-!p3@RFX3!1.15!45.44!RFX3;;chr4:109087885..109087899,-!p23@LEF1!1.15!12.97!LEF1;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.91!IKZF3;;chr8:60031563..60031574,-!p7@TOX!1.13!12.54!TOX;;chr2:214015343..214015366,-!p3@IKZF2!1.13!12.41!IKZF2;;chr7:44143925..44143970,+!p1@AEBP1!1.12!269.96!AEBP1;;chr16:79634624..79634642,-!p1@MAF!1.12!47.43!MAF;;chr21:39870339..39870443,-!p1@ERG!1.12!12.17!ERG;;chr20:62680984..62680999,-!p1@SOX18!1.11!15.95!SOX18;;chr10:8095593..8095625,+!p3@GATA3!1.10!13.72!GATA3;;chr15:57025732..57025743,-!p6@ZNF280D!1.10!11.67!ZNF280D;;chr11:111249993..111250006,-!p1@POU2AF1!1.10!11.48!POU2AF1;;chr6:135502472..135502489,+!p3@MYB!1.08!10.93!MYB;;chr17:42295777..42295816,-!p7@UBTF!1.07!13.10!UBTF;;chr19:19729477..19729542,-!p1@PBX4!1.06!22.41!PBX4;;chr5:71803177..71803255,-!p1@ZNF366!1.06!10.49!ZNF366;;chr1:92951607..92951661,-!p1@GFI1!1.06!10.43!GFI1;;chr3:141747441..141747452,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F195;;chr2:231191875..231191918,+!p1@SP140L!0.42!22.97!SP140L;;chr10:21823128..21823216,+!p1@MLLT10!0.42!20.80!MLLT10;;chr1:202777561..202777582,-!p3@KDM5B!0.42!19.74!KDM5B;;chr19:20278012..20278034,+!p1@ZNF486!0.42!19.49!ZNF486;;chr1:150849174..150849200,-!p2@ARNT!0.42!15.15!ARNT;;chr20:49547691..49547724,-!p2@ADNP!0.42!14.46!ADNP;;chr6:151712673..151712709,-!p1@ZBTB2!0.42!13.22!ZBTB2;;chr17:4981745..4981810,+!p1@ZFP3!0.42!11.24!ZFP3;;chr6:28092375..28092412,+!p1@ZSCAN16!0.42!9.44!ZSCAN16;;chr8:81398444..81398472,+!p1@ZBTB10!0.42!9.00!ZBTB10;;chr19:12405645..12405685,-!p1@ZNF44!0.42!7.88!ZNF44;;chr3:187463220..187463232,-!p3@BCL6!0.42!6.52!BCL6;;chr10:76586311..76586341,+!p2@KAT6B!0.42!5.96!KAT6B;;chr8:106330656..106330684,+!p1@ZFPM2!0.42!5.52!ZFPM2;;chr9:2015306..2015323,+!p3@SMARCA2!0.42!5.52!SMARCA2;;chr1:61548069..61548102,+!p3@NFIA!0.42!5.09!NFIA;;chr1:91487836..91487854,-!p3@ZNF644!0.42!4.72!ZNF644;;chr1:151319654..151319698,-!p2@RFX5!0.42!4.47!RFX5;;chr17:7492684..7492778,-!p2@SOX15!0.42!4.35!SOX15;;chr7:104654690..104654704,+!p2@MLL5!0.42!4.03!MLL5;;chr17:7388010..7388017,-!p5@ZBTB4!0.42!3.29!ZBTB4;;chr19:13213662..13213686,-!p1@LYL1!0.42!2.79!LYL1;;chr4:146859887..146859921,-!p3@ZNF827!0.42!2.67!ZNF827;;chr7:152133109..152133116,-!p2@MLL3!0.42!2.36!MLL3;;chr16:30583204..30583233,-!p5@ZNF688!0.42!2.23!ZNF688;;chr10:97890311..97890324,+!p6@ZNF518A!0.42!2.17!ZNF518A;;chr9:125667739..125667770,-!p4@RC3H2!0.42!1.99!RC3H2;;chr11:6953654..6953661,+!p5@ZNF215!0.42!1.61!ZNF215;;chr6:108910863..108910912,+!p8@FOXO3!0.42!1.61!FOXO3;;chr6:90929463..90929474,-!p9@BACH2!0.42!1.61!BACH2;;chr18:53089521..53089533,-!p22@TCF4!0.42!1.61!TCF4;;chr19:12998003..12998021,-!p1@KLF1!0.42!1.61!KLF1;;chr2:242556900..242556916,-!p6@THAP4!0.42!1.61!THAP4;;chr3:189507460..189507471,+!p3@TP63!0.42!1.61!TP63;;chr3:71355138..71355149,-!p41@FOXP1!0.42!1.61!FOXP1;;chr2:176032843..176032941,-!p1@ATF2!0.41!95.22!ATF2;;chr16:31085714..31085783,+!p1@ZNF646!0.41!37.99!ZNF646;;chr2:27805880..27805967,+!p1@ZNF512!0.41!32.34!ZNF512;;chr2:145277640..145277771,-!p1@ZEB2!0.41!31.16!ZEB2;;chr22:42666624..42666673,-!p@chr22:42666624..42666673,-!0.41!25.08!TCF20;;chr12:2986275..2986363,-!p1@FOXM1!0.41!22.78!FOXM1;;chr16:68573182..68573228,+!p1@ZFP90!0.41!22.16!ZFP90;;chr11:118992269..118992334,+!p1@HINFP!0.41!19.49!HINFP;;chr7:64023441..64023462,-!p1@ZNF680!0.41!17.94!ZNF680;;chr18:32870148..32870223,-!p1@ZSCAN30!0.41!15.95!ZSCAN30;;chr6:108880956..108881011,+!p1@FOXO3!0.41!14.84!FOXO3;;chr19:52643169..52643199,-!p1@ZNF616!0.41!13.10!ZNF616;;chr10:31320777..31320834,-!p1@ZNF438!0.41!11.24!ZNF438;;chr7:5085480..5085510,+!p1@RBAK!0.41!10.06!RBAK;;chr19:53030906..53030952,+!p1@ZNF808!0.41!8.07!ZNF808;;chr19:53636125..53636178,-!p1@ZNF415!0.41!6.02!ZNF415;;chr19:47615426..47615439,-!p5@ZC3H4!0.41!4.78!ZC3H4;;chr9:99180617..99180658,-!p1@ZNF367!0.41!4.41!ZNF367;;chr12:133707021..133707071,-!p2@ZNF891!0.41!3.17!ZNF891;;chr18:47814010..47814021,-!p3@CXXC1!0.41!3.17!CXXC1;;chr18:42260059..42260132,+!p1@SETBP1!0.41!3.10!SETBP1;;chr12:19592563..19592585,+!p5@AEBP2!0.41!2.92!AEBP2;;chr14:103059006..103059017,+!p2@RCOR1!0.41!2.92!RCOR1;;chr14:24584138..24584192,-!p2@NRL!0.41!2.92!NRL;;chr12:56583371..56583394,-!p2@SMARCC2!0.41!2.86!SMARCC2;;chr4:103422076..103422117,+!p5@NFKB1!0.41!2.61!NFKB1;;chr10:31320840..31320859,-!p4@ZNF438!0.41!2.55!ZNF438;;chr3:21792585..21792625,-!p2@ZNF385D!0.41!1.86!ZNF385D;;chr3:27763807..27763822,-!p1@EOMES!0.41!1.55!EOMES;;chr4:109089515..109089523,-!p31@LEF1!0.41!1.55!LEF1;;chr16:79634464..79634493,-!p5@MAF!0.41!1.55!MAF;;chr6:91006309..91006314,-!p10@BACH2!0.41!1.55!BACH2;;chr9:117138946..117138968,-!p4@AKNA!0.41!1.55!AKNA;;chr11:10879593..10879620,-!p1@ZBED5!0.40!69.96!ZBED5;;chr3:183415558..183415649,+!p1@YEATS2!0.40!60.58!YEATS2;;chr10:111985713..111985774,+!p2@MXI1!0.40!21.17!MXI1;;chr7:1570322..1570360,+!p1@MAFK!0.40!18.56!MAFK;;chr9:88969339..88969422,-!p2@ZCCHC6!0.40!17.19!ZCCHC6;;chr19:57831829..57831890,+!p1@ZNF543!0.40!13.47!ZNF543;;chr5:178286925..178287007,+!p1@ZNF354B!0.40!12.48!ZNF354B;;chr9:14314131..14314147,-!p2@NFIB!0.40!12.23!NFIB;;chr19:35759424..35759454,+!p2@USF2!0.40!12.17!USF2;;chr7:149194843..149194922,-!p2@ZNF746!0.40!11.17!ZNF746;;chr19:19496624..19496660,+!p3@GATAD2A!0.40!9.75!GATAD2A;;chr18:22932080..22932170,-!p1@ZNF521!0.40!8.94!ZNF521;;chrX:134477924..134477988,-!p1@ZNF75D!0.40!7.88!ZNF75D;;chr18:72922743..72922761,+!p3@TSHZ1!0.40!6.77!TSHZ1;;chr4:83821835..83821896,+!p1@THAP9!0.40!6.64!THAP9;;chr14:21994449..21994524,-!p2@SALL2!0.40!6.15!SALL2;;chr10:97890024..97890064,+!p2@ZNF518A!0.40!5.46!ZNF518A;;chr2:74229812..74229867,+!p1@TET3!0.40!4.97!TET3;;chr1:42501569..42501614,-!p1@HIVEP3!0.40!3.97!HIVEP3;;chr16:30596963..30596999,-!p3@ZNF785!0.40!3.79!ZNF785;;chr8:123793959..123793977,+!p4@ZHX2!0.40!3.72!ZHX2;;chr7:64254834..64254854,+!p2@ZNF138!0.40!3.35!ZNF138;;chr1:91487013..91487070,-!p6@ZNF644!0.40!2.42!ZNF644;;chr10:21822984..21823023,+!p5@MLLT10!0.40!2.17!MLLT10;;chr3:44626359..44626387,+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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002370;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004177;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009722 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10043-101F7 | |id=FF:10043-101F7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010043 | ||
|is_obsolete= | |||
|library_id=CNhs10650 | |||
|library_id_phase_based=2:CNhs10650 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10043 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10043 | |||
|name=thymus, fetal, pool1 | |name=thymus, fetal, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 63: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10650,LSID658,release008,COMPLETED | |profile_hcage=CNhs10650,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0.0261550693490902,0.074166758861158,0,0,0,0,0,-0.00361051429499704,0.350537636087017,-0.139866143097336,-0.269326025902397,0,0,0,0,0,0,0,0,0,0.0508240440617333,0.074166758861158,0,0,-0.127167940999337,0,0,0,0.09637742662196,0.712566020995723,-0.0718028269189673,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0.0261550693490902,0.156707515791389,0,-0.14198072697969,0,0,0,0,0,0,0,0,0.0344825415637232,0,0.0261550693490902,0,0.074166758861158,0.0261550693490902,0.0123803136961405,0.0261550693490902,-0.0708372918935149,0,0,0.0200514981400181,0.117395125353115,0,0,0,0,0,0,0,0.0508240440617333,0,0,0,0,0.27161999017605,0,0.074166758861158,0.0261550693490902,0,0.0481592864582769,0.0261550693490902,0.123574274915212,0,0,0.0508240440617333,0,0.0130775346745451,0,0.0261550693490902,0.108271084551084,0.006679301754109,0.0384895567054118,0,0.037083379430579,0,0.111679913466717,-0.12539966612635,0,0,0.0130775346745451,0,0,0,0,0,0,0,0,0,0,0,0,1.02618915375952,0,0.478817551303068,0.0508240440617333,0,0,-0.0767402901502359,-0.226379257685274,0,0,0,0,0,0 | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636586 | |rna_catalog_number=Cat:636586 | ||
| Line 56: | Line 80: | ||
|rna_tube_id=101F7 | |rna_tube_id=101F7 | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|rnaseq_library_id=RDhi10057 | |||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 95: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.64037055261263e-232!GO:0043226;organelle;1.54027336705097e-186!GO:0043229;intracellular organelle;5.14901708593578e-186!GO:0043227;membrane-bound organelle;1.56270663259706e-179!GO:0043231;intracellular membrane-bound organelle;3.61615621806341e-179!GO:0005737;cytoplasm;3.16477280716101e-139!GO:0005634;nucleus;1.43806065865419e-116!GO:0005515;protein binding;1.14859319053666e-111!GO:0044422;organelle part;3.38849130447456e-104!GO:0044446;intracellular organelle part;1.21891177264741e-102!GO:0043170;macromolecule metabolic process;1.68605834875272e-91!GO:0044238;primary metabolic process;1.98026612315127e-86!GO:0044237;cellular metabolic process;1.15057873143877e-83!GO:0032991;macromolecular complex;3.7836075393837e-81!GO:0044428;nuclear part;8.92015226988721e-74!GO:0044444;cytoplasmic part;2.49161750840935e-73!GO:0043283;biopolymer metabolic process;7.47193915087275e-70!GO:0003723;RNA binding;2.56110669180186e-61!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.12513073520121e-55!GO:0043233;organelle lumen;1.36767918910562e-54!GO:0031974;membrane-enclosed lumen;1.36767918910562e-54!GO:0016043;cellular component organization and biogenesis;1.49560222195935e-53!GO:0010467;gene expression;2.74630645648256e-50!GO:0030529;ribonucleoprotein complex;1.75162637527575e-49!GO:0043234;protein complex;4.32149268636888e-47!GO:0031981;nuclear lumen;2.33771659985573e-44!GO:0019538;protein metabolic process;2.73997256189892e-43!GO:0033036;macromolecule localization;1.13077412940732e-42!GO:0006259;DNA metabolic process;1.26937542118093e-42!GO:0016071;mRNA metabolic process;1.26105541867476e-39!GO:0015031;protein transport;2.31405340274604e-39!GO:0003676;nucleic acid binding;8.83124562908859e-39!GO:0044267;cellular protein metabolic process;2.11737912033138e-38!GO:0008104;protein localization;2.42066813483998e-38!GO:0044260;cellular macromolecule metabolic process;5.11900346180302e-38!GO:0045184;establishment of protein localization;9.98453745738757e-38!GO:0006996;organelle organization and biogenesis;4.51299039635556e-36!GO:0006396;RNA processing;5.46799421975728e-36!GO:0046907;intracellular transport;7.43332063739933e-33!GO:0008380;RNA splicing;1.03105639737336e-32!GO:0005654;nucleoplasm;1.12645224804197e-32!GO:0043228;non-membrane-bound organelle;5.61210229458464e-32!GO:0043232;intracellular non-membrane-bound organelle;5.61210229458464e-32!GO:0006397;mRNA processing;5.67676442061458e-32!GO:0065003;macromolecular complex assembly;6.3006619378783e-32!GO:0016070;RNA metabolic process;8.33322295142516e-32!GO:0050794;regulation of cellular process;6.63352313862863e-30!GO:0006412;translation;6.67596477897861e-30!GO:0022607;cellular component assembly;1.22493303115874e-29!GO:0007049;cell cycle;1.98663795100447e-29!GO:0005829;cytosol;5.31391169093707e-28!GO:0006886;intracellular protein transport;5.56315279426213e-27!GO:0050789;regulation of biological process;1.64363452051197e-26!GO:0044451;nucleoplasm part;5.60349045600885e-26!GO:0031090;organelle membrane;3.37723324351881e-25!GO:0051641;cellular localization;5.0858576737975e-25!GO:0005739;mitochondrion;1.12455691991025e-24!GO:0031967;organelle envelope;1.16901359198343e-24!GO:0008134;transcription factor binding;1.36683502674249e-24!GO:0051649;establishment of cellular localization;1.38825560147891e-24!GO:0031975;envelope;2.10193258412739e-24!GO:0051276;chromosome organization and biogenesis;1.09175007501346e-23!GO:0000166;nucleotide binding;1.13943017987379e-23!GO:0005681;spliceosome;1.26352396986917e-23!GO:0005840;ribosome;1.32709619629142e-23!GO:0006512;ubiquitin cycle;2.33536125380758e-22!GO:0012501;programmed cell death;4.35213208501879e-22!GO:0006915;apoptosis;5.427725366527e-22!GO:0022402;cell cycle process;5.97115182632418e-22!GO:0008219;cell death;5.21209775027774e-21!GO:0016265;death;5.21209775027774e-21!GO:0005694;chromosome;7.68360429547877e-21!GO:0003735;structural constituent of ribosome;1.90553008480324e-20!GO:0065007;biological regulation;4.52019259331246e-20!GO:0043412;biopolymer modification;6.56920077209968e-20!GO:0006325;establishment and/or maintenance of chromatin architecture;7.57449860610027e-20!GO:0043687;post-translational protein modification;8.1304491594505e-20!GO:0006974;response to DNA damage stimulus;1.13334788358215e-19!GO:0009059;macromolecule biosynthetic process;1.77775438817224e-19!GO:0044427;chromosomal part;3.38550371867694e-19!GO:0006323;DNA packaging;4.18952753314044e-19!GO:0000278;mitotic cell cycle;7.56856344481651e-19!GO:0044265;cellular macromolecule catabolic process;8.66771389366724e-19!GO:0033279;ribosomal subunit;2.04312333805025e-18!GO:0043285;biopolymer catabolic process;3.783826472964e-18!GO:0006464;protein modification process;5.27039997898706e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;6.02422395777858e-18!GO:0019941;modification-dependent protein catabolic process;6.84638803416283e-18!GO:0043632;modification-dependent macromolecule catabolic process;6.84638803416283e-18!GO:0044429;mitochondrial part;8.74927795982029e-18!GO:0006511;ubiquitin-dependent protein catabolic process;8.98483645673484e-18!GO:0044257;cellular protein catabolic process;1.12065254586248e-17!GO:0019222;regulation of metabolic process;1.99496312353673e-17!GO:0044445;cytosolic part;3.74553618865936e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.39604371409205e-17!GO:0032553;ribonucleotide binding;5.66116272296138e-17!GO:0032555;purine ribonucleotide binding;5.66116272296138e-17!GO:0016874;ligase activity;6.38290718150531e-16!GO:0006281;DNA repair;7.47700816651276e-16!GO:0048523;negative regulation of cellular process;7.62209895685951e-16!GO:0009057;macromolecule catabolic process;8.44445125381288e-16!GO:0003712;transcription cofactor activity;8.48215478859745e-16!GO:0006366;transcription from RNA polymerase II promoter;1.00486724328241e-15!GO:0016604;nuclear body;1.01884903107494e-15!GO:0005524;ATP binding;1.02442759625902e-15!GO:0030163;protein catabolic process;1.10828101898332e-15!GO:0017076;purine nucleotide binding;1.17600700135482e-15!GO:0048770;pigment granule;1.42840969062717e-15!GO:0042470;melanosome;1.42840969062717e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.78756844295259e-15!GO:0006913;nucleocytoplasmic transport;4.56070216792275e-15!GO:0032559;adenyl ribonucleotide binding;4.96204441266291e-15!GO:0016462;pyrophosphatase activity;4.99400218472963e-15!GO:0016568;chromatin modification;5.13403143345948e-15!GO:0022403;cell cycle phase;6.30201445684363e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.50646741695347e-15!GO:0009719;response to endogenous stimulus;6.8393070279051e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;7.81508033509128e-15!GO:0044249;cellular biosynthetic process;9.45095663320675e-15!GO:0005635;nuclear envelope;1.00969914591158e-14!GO:0051169;nuclear transport;1.16170877022985e-14!GO:0048519;negative regulation of biological process;1.35065480499894e-14!GO:0017111;nucleoside-triphosphatase activity;1.40151442870293e-14!GO:0042981;regulation of apoptosis;2.9711110189125e-14!GO:0031965;nuclear membrane;5.33978544984025e-14!GO:0000087;M phase of mitotic cell cycle;6.84746790108557e-14!GO:0031323;regulation of cellular metabolic process;7.50230205199344e-14!GO:0043067;regulation of programmed cell death;8.91341273403698e-14!GO:0051301;cell division;1.39062654461137e-13!GO:0030554;adenyl nucleotide binding;1.4333526178973e-13!GO:0007067;mitosis;1.51850817003393e-13!GO:0016192;vesicle-mediated transport;2.23188877010769e-13!GO:0051726;regulation of cell cycle;2.52974046855685e-13!GO:0000074;regulation of progression through cell cycle;3.55122091354639e-13!GO:0016607;nuclear speck;3.70688042092306e-13!GO:0006605;protein targeting;3.92179615068958e-13!GO:0006260;DNA replication;4.55368700257081e-13!GO:0009058;biosynthetic process;4.89259359796168e-13!GO:0000785;chromatin;5.49376627281254e-13!GO:0019866;organelle inner membrane;5.97636384852167e-13!GO:0006119;oxidative phosphorylation;6.93335107361858e-13!GO:0006793;phosphorus metabolic process;1.81776534676119e-12!GO:0006796;phosphate metabolic process;1.81776534676119e-12!GO:0008639;small protein conjugating enzyme activity;2.5787495905203e-12!GO:0044248;cellular catabolic process;2.82195058923615e-12!GO:0022618;protein-RNA complex assembly;2.91775022256775e-12!GO:0004842;ubiquitin-protein ligase activity;2.91775022256775e-12!GO:0005740;mitochondrial envelope;3.30483784040426e-12!GO:0006950;response to stress;3.6967125276703e-12!GO:0048193;Golgi vesicle transport;7.26256654481369e-12!GO:0006333;chromatin assembly or disassembly;9.34539806410728e-12!GO:0031966;mitochondrial membrane;1.03755331151564e-11!GO:0044453;nuclear membrane part;1.08065044283968e-11!GO:0019787;small conjugating protein ligase activity;1.39279486059618e-11!GO:0006350;transcription;1.64268612611394e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.95062039364836e-11!GO:0000375;RNA splicing, via transesterification reactions;1.95062039364836e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.95062039364836e-11!GO:0010468;regulation of gene expression;1.9858311552085e-11!GO:0000279;M phase;2.44511085023878e-11!GO:0019899;enzyme binding;2.44785286360163e-11!GO:0065004;protein-DNA complex assembly;3.13010545747918e-11!GO:0000502;proteasome complex (sensu Eukaryota);4.44702986253028e-11!GO:0016564;transcription repressor activity;5.28205589936976e-11!GO:0005743;mitochondrial inner membrane;5.32158594406606e-11!GO:0012505;endomembrane system;5.54879882964293e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.65465963820413e-11!GO:0006403;RNA localization;5.77133076252415e-11!GO:0050657;nucleic acid transport;7.59433062729766e-11!GO:0051236;establishment of RNA localization;7.59433062729766e-11!GO:0050658;RNA transport;7.59433062729766e-11!GO:0016310;phosphorylation;1.61760763507497e-10!GO:0005643;nuclear pore;1.85685285459653e-10!GO:0006457;protein folding;2.0511921470102e-10!GO:0008135;translation factor activity, nucleic acid binding;2.0947469576711e-10!GO:0031324;negative regulation of cellular metabolic process;2.4508907737767e-10!GO:0015935;small ribosomal subunit;2.6582092859524e-10!GO:0004386;helicase activity;2.75444822573832e-10!GO:0006461;protein complex assembly;3.3550118014851e-10!GO:0016887;ATPase activity;3.96424188759646e-10!GO:0042623;ATPase activity, coupled;7.62738496414106e-10!GO:0005730;nucleolus;7.64969845367041e-10!GO:0009892;negative regulation of metabolic process;9.95690816117131e-10!GO:0051246;regulation of protein metabolic process;1.0786136250765e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17401786953598e-09!GO:0016563;transcription activator activity;1.27062165888861e-09!GO:0005768;endosome;1.53058720976962e-09!GO:0003713;transcription coactivator activity;1.95376880543833e-09!GO:0048522;positive regulation of cellular process;1.9810626484853e-09!GO:0008565;protein transporter activity;2.3289138096638e-09!GO:0005794;Golgi apparatus;2.40075147043039e-09!GO:0032774;RNA biosynthetic process;2.45443684698783e-09!GO:0043069;negative regulation of programmed cell death;2.46697545950611e-09!GO:0043566;structure-specific DNA binding;2.53184640189076e-09!GO:0043066;negative regulation of apoptosis;2.60228222655873e-09!GO:0006351;transcription, DNA-dependent;3.25115510793971e-09!GO:0051028;mRNA transport;3.98678542280381e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.04997121894178e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.22548665505946e-09!GO:0006916;anti-apoptosis;4.70039523621321e-09!GO:0016881;acid-amino acid ligase activity;5.28633270968384e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.79085264149304e-09!GO:0015934;large ribosomal subunit;5.85323333836527e-09!GO:0045449;regulation of transcription;6.40555128788654e-09!GO:0009056;catabolic process;1.0771019214821e-08!GO:0017038;protein import;1.38512279677959e-08!GO:0016481;negative regulation of transcription;1.47149985506554e-08!GO:0015630;microtubule cytoskeleton;1.70590597980572e-08!GO:0051082;unfolded protein binding;1.90573336477511e-08!GO:0005813;centrosome;2.58555267410875e-08!GO:0044455;mitochondrial membrane part;2.60097815827382e-08!GO:0003697;single-stranded DNA binding;2.61135328611137e-08!GO:0048518;positive regulation of biological process;2.81025305637332e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.90350452387037e-08!GO:0003743;translation initiation factor activity;3.02205431161827e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.13148181913612e-08!GO:0031980;mitochondrial lumen;3.42303286126488e-08!GO:0005759;mitochondrial matrix;3.42303286126488e-08!GO:0005746;mitochondrial respiratory chain;3.42303286126488e-08!GO:0032446;protein modification by small protein conjugation;4.33869263781958e-08!GO:0008026;ATP-dependent helicase activity;5.15239236318004e-08!GO:0046930;pore complex;5.40613136704741e-08!GO:0003677;DNA binding;5.6398108698862e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.75287786703858e-08!GO:0006606;protein import into nucleus;7.66824500443899e-08!GO:0051170;nuclear import;8.66309479762268e-08!GO:0050136;NADH dehydrogenase (quinone) activity;8.91106306576972e-08!GO:0003954;NADH dehydrogenase activity;8.91106306576972e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.91106306576972e-08!GO:0007243;protein kinase cascade;9.69516664430541e-08!GO:0016567;protein ubiquitination;1.1449225985847e-07!GO:0005815;microtubule organizing center;1.21477137934582e-07!GO:0006355;regulation of transcription, DNA-dependent;1.21477137934582e-07!GO:0006446;regulation of translational initiation;1.31993501787129e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.36692146495334e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.39352742396292e-07!GO:0065009;regulation of a molecular function;1.68089527793345e-07!GO:0030695;GTPase regulator activity;2.09009751392798e-07!GO:0042110;T cell activation;2.31969233964728e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.66781386272045e-07!GO:0019829;cation-transporting ATPase activity;3.4203435825163e-07!GO:0031497;chromatin assembly;3.70613628603499e-07!GO:0005783;endoplasmic reticulum;3.98327916107442e-07!GO:0003714;transcription corepressor activity;4.0197793452635e-07!GO:0006334;nucleosome assembly;4.36571209759694e-07!GO:0007242;intracellular signaling cascade;4.55293449646107e-07!GO:0006413;translational initiation;4.95356339624864e-07!GO:0005773;vacuole;5.05458718899995e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.66163336241309e-07!GO:0005667;transcription factor complex;5.86398159601875e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.00093746886043e-07!GO:0005819;spindle;7.42992547908198e-07!GO:0000323;lytic vacuole;7.74416908087577e-07!GO:0005764;lysosome;7.74416908087577e-07!GO:0065002;intracellular protein transport across a membrane;8.30384106421511e-07!GO:0005793;ER-Golgi intermediate compartment;9.50718294340311e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.08549135603337e-06!GO:0045786;negative regulation of progression through cell cycle;1.09745081591437e-06!GO:0043065;positive regulation of apoptosis;1.15292917509612e-06!GO:0007264;small GTPase mediated signal transduction;1.50678603260374e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.51375437307198e-06!GO:0042775;organelle ATP synthesis coupled electron transport;1.67565951073438e-06!GO:0042773;ATP synthesis coupled electron transport;1.67565951073438e-06!GO:0051168;nuclear export;1.77534910340926e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.06533933934369e-06!GO:0043068;positive regulation of programmed cell death;2.08295066034069e-06!GO:0000151;ubiquitin ligase complex;2.10406844043958e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.54642664878523e-06!GO:0003682;chromatin binding;2.59555281225062e-06!GO:0004674;protein serine/threonine kinase activity;2.90240689816846e-06!GO:0016363;nuclear matrix;3.06484429543104e-06!GO:0030964;NADH dehydrogenase complex (quinone);3.13849272876736e-06!GO:0045271;respiratory chain complex I;3.13849272876736e-06!GO:0005747;mitochondrial respiratory chain complex I;3.13849272876736e-06!GO:0048475;coated membrane;3.29623086275284e-06!GO:0030117;membrane coat;3.29623086275284e-06!GO:0031982;vesicle;3.60479245870311e-06!GO:0006310;DNA recombination;4.49634851562562e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.38992076334601e-06!GO:0007265;Ras protein signal transduction;5.48592170544342e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.69654178225586e-06!GO:0003690;double-stranded DNA binding;5.73423457189802e-06!GO:0008047;enzyme activator activity;5.78314207195182e-06!GO:0015986;ATP synthesis coupled proton transport;5.9210195928789e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.9210195928789e-06!GO:0031252;leading edge;6.35520120464084e-06!GO:0045892;negative regulation of transcription, DNA-dependent;6.49189803980004e-06!GO:0009060;aerobic respiration;6.71415032423051e-06!GO:0005083;small GTPase regulator activity;7.28671893254673e-06!GO:0030120;vesicle coat;7.69980746564015e-06!GO:0030662;coated vesicle membrane;7.69980746564015e-06!GO:0007010;cytoskeleton organization and biogenesis;7.82760331177156e-06!GO:0006261;DNA-dependent DNA replication;8.02701294597166e-06!GO:0048468;cell development;8.10413883038434e-06!GO:0051329;interphase of mitotic cell cycle;8.23663182303852e-06!GO:0004298;threonine endopeptidase activity;9.5771524796149e-06!GO:0051325;interphase;9.63523223057027e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.08957415944442e-05!GO:0005770;late endosome;1.10591315409707e-05!GO:0051427;hormone receptor binding;1.19602207018168e-05!GO:0000245;spliceosome assembly;1.21085133070465e-05!GO:0045333;cellular respiration;1.22132173791327e-05!GO:0031410;cytoplasmic vesicle;1.26080387775711e-05!GO:0009259;ribonucleotide metabolic process;1.3335659375942e-05!GO:0046649;lymphocyte activation;1.48849512731225e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.56737161301124e-05!GO:0006163;purine nucleotide metabolic process;1.60470931170983e-05!GO:0030029;actin filament-based process;1.93240105023175e-05!GO:0005096;GTPase activator activity;1.96945926026964e-05!GO:0035257;nuclear hormone receptor binding;2.12511007474058e-05!GO:0006164;purine nucleotide biosynthetic process;2.12511007474058e-05!GO:0016197;endosome transport;2.20731599037706e-05!GO:0006613;cotranslational protein targeting to membrane;2.53801582473139e-05!GO:0044432;endoplasmic reticulum part;2.77792164283548e-05!GO:0042101;T cell receptor complex;2.79657647611897e-05!GO:0006402;mRNA catabolic process;2.85254543178427e-05!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.96089730552229e-05!GO:0006401;RNA catabolic process;2.9626711085802e-05!GO:0009150;purine ribonucleotide metabolic process;3.02260015239369e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.3591814169745e-05!GO:0006917;induction of apoptosis;3.38417926014764e-05!GO:0006099;tricarboxylic acid cycle;3.38417926014764e-05!GO:0046356;acetyl-CoA catabolic process;3.38417926014764e-05!GO:0051186;cofactor metabolic process;3.81751537572259e-05!GO:0009152;purine ribonucleotide biosynthetic process;3.89056623753279e-05!GO:0043623;cellular protein complex assembly;3.89284559709599e-05!GO:0050790;regulation of catalytic activity;4.03234781682823e-05!GO:0045321;leukocyte activation;4.18202309453039e-05!GO:0031988;membrane-bound vesicle;4.29291256205016e-05!GO:0016787;hydrolase activity;4.29804023879165e-05!GO:0009260;ribonucleotide biosynthetic process;4.40327136418221e-05!GO:0007051;spindle organization and biogenesis;4.56783654405937e-05!GO:0000775;chromosome, pericentric region;5.05341509465115e-05!GO:0012502;induction of programmed cell death;5.63639268138833e-05!GO:0009966;regulation of signal transduction;5.74065207977021e-05!GO:0008270;zinc ion binding;6.06907440522946e-05!GO:0044440;endosomal part;6.29483977958011e-05!GO:0010008;endosome membrane;6.29483977958011e-05!GO:0005761;mitochondrial ribosome;8.01829403094697e-05!GO:0000313;organellar ribosome;8.01829403094697e-05!GO:0015078;hydrogen ion transmembrane transporter activity;9.10830746310793e-05!GO:0048471;perinuclear region of cytoplasm;0.000104138552239813!GO:0003724;RNA helicase activity;0.000108431417484347!GO:0003702;RNA polymerase II transcription factor activity;0.000114316787650259!GO:0009615;response to virus;0.000118198494931859!GO:0033673;negative regulation of kinase activity;0.000119630753258406!GO:0006469;negative regulation of protein kinase activity;0.000119630753258406!GO:0002376;immune system process;0.000122217043447573!GO:0016023;cytoplasmic membrane-bound vesicle;0.000126036206402531!GO:0005657;replication fork;0.000128287683699269!GO:0006612;protein targeting to membrane;0.000129086669486241!GO:0060090;molecular adaptor activity;0.000129631774241365!GO:0045259;proton-transporting ATP synthase complex;0.000140671713812611!GO:0006754;ATP biosynthetic process;0.000172849822990782!GO:0006753;nucleoside phosphate metabolic process;0.000172849822990782!GO:0003924;GTPase activity;0.000172849822990782!GO:0042802;identical protein binding;0.000173805614667033!GO:0051348;negative regulation of transferase activity;0.000181308435666893!GO:0005798;Golgi-associated vesicle;0.000187435682077499!GO:0006084;acetyl-CoA metabolic process;0.000204595547867243!GO:0007059;chromosome segregation;0.000206044646437027!GO:0016779;nucleotidyltransferase activity;0.000211297634523744!GO:0006352;transcription initiation;0.000211850482199501!GO:0003729;mRNA binding;0.000213822669182011!GO:0006302;double-strand break repair;0.00026274136364365!GO:0006732;coenzyme metabolic process;0.000280436567709212!GO:0042254;ribosome biogenesis and assembly;0.000284979646155294!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000285721964704608!GO:0000786;nucleosome;0.000287785875328424!GO:0001772;immunological synapse;0.000290141479999186!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000310463853233459!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000331758976541469!GO:0005525;GTP binding;0.000368320459628493!GO:0051052;regulation of DNA metabolic process;0.000369626791421866!GO:0043087;regulation of GTPase activity;0.000369671053406569!GO:0016044;membrane organization and biogenesis;0.000394384791237161!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000405638178280922!GO:0006417;regulation of translation;0.000405638178280922!GO:0005789;endoplasmic reticulum membrane;0.000416576612945915!GO:0000075;cell cycle checkpoint;0.000417282745217212!GO:0046034;ATP metabolic process;0.000417282745217212!GO:0009109;coenzyme catabolic process;0.000420663034969495!GO:0016301;kinase activity;0.000421637576639213!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000435355991278616!GO:0004812;aminoacyl-tRNA ligase activity;0.000435355991278616!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000435355991278616!GO:0045893;positive regulation of transcription, DNA-dependent;0.00044627451095968!GO:0006607;NLS-bearing substrate import into nucleus;0.000457960466376937!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00046430519053239!GO:0030097;hemopoiesis;0.000478487977481816!GO:0051338;regulation of transferase activity;0.000518241566334389!GO:0005885;Arp2/3 protein complex;0.000531461414616194!GO:0006338;chromatin remodeling;0.000538818318160608!GO:0030217;T cell differentiation;0.000552563252225291!GO:0016791;phosphoric monoester hydrolase activity;0.000559173276120744!GO:0051187;cofactor catabolic process;0.000560695027546286!GO:0051789;response to protein stimulus;0.000565346908739782!GO:0006986;response to unfolded protein;0.000565346908739782!GO:0008092;cytoskeletal protein binding;0.000580173920776383!GO:0009142;nucleoside triphosphate biosynthetic process;0.000581493397482485!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000581493397482485!GO:0008234;cysteine-type peptidase activity;0.000604881029676041!GO:0045941;positive regulation of transcription;0.000616771277050662!GO:0008094;DNA-dependent ATPase activity;0.00062674720719716!GO:0043038;amino acid activation;0.00064699604461397!GO:0006418;tRNA aminoacylation for protein translation;0.00064699604461397!GO:0043039;tRNA aminoacylation;0.00064699604461397!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000666839642993427!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000666839642993427!GO:0016740;transferase activity;0.00069625315619773!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000737301744095141!GO:0030027;lamellipodium;0.000751513464810933!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00077645327991359!GO:0030521;androgen receptor signaling pathway;0.00077645327991359!GO:0051252;regulation of RNA metabolic process;0.000867718658725459!GO:0006611;protein export from nucleus;0.000875243878838986!GO:0009199;ribonucleoside triphosphate metabolic process;0.000882729266852319!GO:0009141;nucleoside triphosphate metabolic process;0.000921246320024037!GO:0043549;regulation of kinase activity;0.000953771096017589!GO:0006468;protein amino acid phosphorylation;0.000976260937665406!GO:0005769;early endosome;0.000985753900304049!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.00100766462506874!GO:0009144;purine nucleoside triphosphate metabolic process;0.00100766462506874!GO:0000776;kinetochore;0.00100766462506874!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00105942733447521!GO:0007052;mitotic spindle organization and biogenesis;0.00106635932292473!GO:0008186;RNA-dependent ATPase activity;0.00112557858696505!GO:0008361;regulation of cell size;0.00115323238400066!GO:0007088;regulation of mitosis;0.0011642876226532!GO:0051336;regulation of hydrolase activity;0.00117571202237403!GO:0009055;electron carrier activity;0.00128207826464433!GO:0001775;cell activation;0.0013026708949756!GO:0009967;positive regulation of signal transduction;0.00144806773341996!GO:0031326;regulation of cellular biosynthetic process;0.00147473540437096!GO:0008283;cell proliferation;0.00155596008287216!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00161398806999549!GO:0044431;Golgi apparatus part;0.00164594570163122!GO:0050863;regulation of T cell activation;0.00171832769152814!GO:0002520;immune system development;0.00171844603306675!GO:0019904;protein domain specific binding;0.00178319830101928!GO:0006891;intra-Golgi vesicle-mediated transport;0.00183348053940278!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00188508073999755!GO:0016251;general RNA polymerase II transcription factor activity;0.00195103009317703!GO:0016049;cell growth;0.00198056992079762!GO:0035258;steroid hormone receptor binding;0.00208745673439364!GO:0048534;hemopoietic or lymphoid organ development;0.00213006275424468!GO:0007093;mitotic cell cycle checkpoint;0.00213048665506354!GO:0030518;steroid hormone receptor signaling pathway;0.00214446048394083!GO:0005099;Ras GTPase activator activity;0.00219049424453569!GO:0003678;DNA helicase activity;0.00228351213979737!GO:0051235;maintenance of localization;0.00234509462390604!GO:0045859;regulation of protein kinase activity;0.0023882366641819!GO:0005637;nuclear inner membrane;0.00246220472016961!GO:0005774;vacuolar membrane;0.0026677874672894!GO:0005070;SH3/SH2 adaptor activity;0.00268063402185575!GO:0032561;guanyl ribonucleotide binding;0.002694249317231!GO:0019001;guanyl nucleotide binding;0.002694249317231!GO:0007005;mitochondrion organization and biogenesis;0.0027177124753016!GO:0006650;glycerophospholipid metabolic process;0.00276185843120958!GO:0019900;kinase binding;0.00277910069857732!GO:0051251;positive regulation of lymphocyte activation;0.00283940169083419!GO:0000792;heterochromatin;0.00299508603199108!GO:0051188;cofactor biosynthetic process;0.00318052339978698!GO:0008139;nuclear localization sequence binding;0.00321592574589753!GO:0004004;ATP-dependent RNA helicase activity;0.00324771493402078!GO:0015631;tubulin binding;0.0032556089810165!GO:0050852;T cell receptor signaling pathway;0.00326773273948157!GO:0030118;clathrin coat;0.00327036940911913!GO:0030867;rough endoplasmic reticulum membrane;0.00339202974891626!GO:0007050;cell cycle arrest;0.0034415093943568!GO:0009889;regulation of biosynthetic process;0.00344447790397486!GO:0002521;leukocyte differentiation;0.00355493070405727!GO:0040029;regulation of gene expression, epigenetic;0.00360763789996112!GO:0016584;nucleosome positioning;0.00362017897838036!GO:0045792;negative regulation of cell size;0.00370905843073007!GO:0047485;protein N-terminus binding;0.00374794429175194!GO:0006405;RNA export from nucleus;0.00381036860267977!GO:0001558;regulation of cell growth;0.00382343337018744!GO:0008276;protein methyltransferase activity;0.00385637505660268!GO:0030098;lymphocyte differentiation;0.00417961879656806!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00418940486209216!GO:0009893;positive regulation of metabolic process;0.00419893692930934!GO:0004672;protein kinase activity;0.0042907991780876!GO:0003684;damaged DNA binding;0.00432227957122853!GO:0000118;histone deacetylase complex;0.00435227878899132!GO:0006364;rRNA processing;0.00450220732647715!GO:0031902;late endosome membrane;0.00453057004593139!GO:0030133;transport vesicle;0.00453134095923054!GO:0005765;lysosomal membrane;0.00453304262598947!GO:0043414;biopolymer methylation;0.00460153192112015!GO:0050870;positive regulation of T cell activation;0.00465254557072051!GO:0030384;phosphoinositide metabolic process;0.0046997909466893!GO:0016788;hydrolase activity, acting on ester bonds;0.0047369803857097!GO:0016072;rRNA metabolic process;0.00479676306958534!GO:0004721;phosphoprotein phosphatase activity;0.00488618510767972!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00496412940275827!GO:0019210;kinase inhibitor activity;0.00499808045267957!GO:0005791;rough endoplasmic reticulum;0.0051523298063124!GO:0032200;telomere organization and biogenesis;0.00526757497742455!GO:0000723;telomere maintenance;0.00526757497742455!GO:0030674;protein binding, bridging;0.00542276524431292!GO:0045045;secretory pathway;0.00544527394518036!GO:0030308;negative regulation of cell growth;0.00546548397941554!GO:0046983;protein dimerization activity;0.00562880367079919!GO:0043488;regulation of mRNA stability;0.00565448960861528!GO:0043487;regulation of RNA stability;0.00565448960861528!GO:0002764;immune response-regulating signal transduction;0.0056953180594812!GO:0030522;intracellular receptor-mediated signaling pathway;0.00577979604924102!GO:0019901;protein kinase binding;0.00577979604924102!GO:0007034;vacuolar transport;0.00580692335756518!GO:0032508;DNA duplex unwinding;0.00581018550816983!GO:0032392;DNA geometric change;0.00581018550816983!GO:0005048;signal sequence binding;0.00591596642719021!GO:0032318;regulation of Ras GTPase activity;0.00600498599990569!GO:0048500;signal recognition particle;0.00605694734253783!GO:0046914;transition metal ion binding;0.00608796074519986!GO:0000059;protein import into nucleus, docking;0.0062877271214987!GO:0050851;antigen receptor-mediated signaling pathway;0.00634964088604789!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00642119955819417!GO:0043021;ribonucleoprotein binding;0.00657396059099339!GO:0004860;protein kinase inhibitor activity;0.00657396059099339!GO:0032259;methylation;0.00657945666032012!GO:0006268;DNA unwinding during replication;0.00676449968656008!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00677063631814086!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00677063631814086!GO:0006752;group transfer coenzyme metabolic process;0.00677063631814086!GO:0008654;phospholipid biosynthetic process;0.00714433573393029!GO:0018193;peptidyl-amino acid modification;0.00731170786025468!GO:0005856;cytoskeleton;0.00735767981068228!GO:0009117;nucleotide metabolic process;0.00736903063188986!GO:0046822;regulation of nucleocytoplasmic transport;0.0074585647059043!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00757131167936168!GO:0004527;exonuclease activity;0.0075755639179475!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00758427359513163!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00758427359513163!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00758427359513163!GO:0050865;regulation of cell activation;0.00777188055118694!GO:0051087;chaperone binding;0.00784482055963649!GO:0008632;apoptotic program;0.00808089802426613!GO:0006399;tRNA metabolic process;0.00810660559413289!GO:0004518;nuclease activity;0.0082404152714599!GO:0006979;response to oxidative stress;0.008274209632649!GO:0016569;covalent chromatin modification;0.00830618492631516!GO:0051249;regulation of lymphocyte activation;0.00844048050332972!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00884961113027485!GO:0001726;ruffle;0.00889569792826964!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00889739595431577!GO:0045047;protein targeting to ER;0.00889739595431577!GO:0005521;lamin binding;0.00896834359207423!GO:0019843;rRNA binding;0.00904036234738993!GO:0002757;immune response-activating signal transduction;0.00912601345104443!GO:0030127;COPII vesicle coat;0.00941114952960287!GO:0012507;ER to Golgi transport vesicle membrane;0.00941114952960287!GO:0000082;G1/S transition of mitotic cell cycle;0.00944495866724442!GO:0030134;ER to Golgi transport vesicle;0.00958790191089121!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00971522159353578!GO:0030658;transport vesicle membrane;0.00989162141944396!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0100058575187546!GO:0009108;coenzyme biosynthetic process;0.0100187701724043!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0100713650700625!GO:0005684;U2-dependent spliceosome;0.0102516838205207!GO:0008250;oligosaccharyl transferase complex;0.0103780303769549!GO:0005876;spindle microtubule;0.0104842811825775!GO:0016311;dephosphorylation;0.0106775128004998!GO:0032940;secretion by cell;0.0106918811295446!GO:0005874;microtubule;0.0108976174865183!GO:0005938;cell cortex;0.0109069122829999!GO:0008624;induction of apoptosis by extracellular signals;0.0109343499894133!GO:0022415;viral reproductive process;0.0111242384588252!GO:0044437;vacuolar part;0.0112652857718414!GO:0006892;post-Golgi vesicle-mediated transport;0.0113265746207738!GO:0048487;beta-tubulin binding;0.0115330053001756!GO:0004576;oligosaccharyl transferase activity;0.0116388407013443!GO:0042393;histone binding;0.0119769024386736!GO:0000209;protein polyubiquitination;0.0119783554644672!GO:0031325;positive regulation of cellular metabolic process;0.0119788232946247!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0120541805935346!GO:0008286;insulin receptor signaling pathway;0.0120832611411354!GO:0033116;ER-Golgi intermediate compartment membrane;0.0123021597443488!GO:0050854;regulation of antigen receptor-mediated signaling pathway;0.0124715504928829!GO:0030258;lipid modification;0.0129252266007207!GO:0046966;thyroid hormone receptor binding;0.0129252266007207!GO:0045058;T cell selection;0.0130703528496485!GO:0019783;small conjugating protein-specific protease activity;0.0135501414453922!GO:0008312;7S RNA binding;0.0136581286603486!GO:0008637;apoptotic mitochondrial changes;0.0140386449318335!GO:0030041;actin filament polymerization;0.0144778635898205!GO:0051920;peroxiredoxin activity;0.0144841430018105!GO:0003725;double-stranded RNA binding;0.0145507586179934!GO:0046854;phosphoinositide phosphorylation;0.0146010357868584!GO:0051056;regulation of small GTPase mediated signal transduction;0.0146566408859284!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0146566408859284!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0147245845024159!GO:0000781;chromosome, telomeric region;0.014932719748487!GO:0000922;spindle pole;0.014932719748487!GO:0004843;ubiquitin-specific protease activity;0.0151548104512507!GO:0006289;nucleotide-excision repair;0.0155222105665535!GO:0008629;induction of apoptosis by intracellular signals;0.0156760370420669!GO:0050681;androgen receptor binding;0.0157241031614675!GO:0046578;regulation of Ras protein signal transduction;0.0161192664595506!GO:0043086;negative regulation of catalytic activity;0.0161944784634719!GO:0008154;actin polymerization and/or depolymerization;0.0162843955445987!GO:0006383;transcription from RNA polymerase III promoter;0.0166763240473638!GO:0006376;mRNA splice site selection;0.0170239060055723!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0170239060055723!GO:0030155;regulation of cell adhesion;0.0174053719302!GO:0042026;protein refolding;0.0174222996722675!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0175369724334941!GO:0030663;COPI coated vesicle membrane;0.0178823465330194!GO:0030126;COPI vesicle coat;0.0178823465330194!GO:0031072;heat shock protein binding;0.0180070551904673!GO:0000910;cytokinesis;0.0180070551904673!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0185687009950232!GO:0004221;ubiquitin thiolesterase activity;0.0186825927543925!GO:0051128;regulation of cellular component organization and biogenesis;0.0187716814463838!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0190437424069328!GO:0015399;primary active transmembrane transporter activity;0.0190437424069328!GO:0006897;endocytosis;0.0192166313501118!GO:0010324;membrane invagination;0.0192166313501118!GO:0031625;ubiquitin protein ligase binding;0.0194854630479215!GO:0031901;early endosome membrane;0.0197247381600967!GO:0045926;negative regulation of growth;0.020161652248146!GO:0050856;regulation of T cell receptor signaling pathway;0.020425859896798!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0205234095084577!GO:0016859;cis-trans isomerase activity;0.0205234095084577!GO:0019882;antigen processing and presentation;0.0209680808013489!GO:0008287;protein serine/threonine phosphatase complex;0.021026966010702!GO:0016279;protein-lysine N-methyltransferase activity;0.0211510395495621!GO:0018024;histone-lysine N-methyltransferase activity;0.0211510395495621!GO:0016278;lysine N-methyltransferase activity;0.0211510395495621!GO:0006672;ceramide metabolic process;0.0211614997754681!GO:0008017;microtubule binding;0.0212563601421444!GO:0006284;base-excision repair;0.0212723006066823!GO:0004003;ATP-dependent DNA helicase activity;0.021498088281722!GO:0006818;hydrogen transport;0.0222739958526381!GO:0051283;negative regulation of sequestering of calcium ion;0.0223652762175585!GO:0051282;regulation of sequestering of calcium ion;0.0223652762175585!GO:0051209;release of sequestered calcium ion into cytosol;0.0223652762175585!GO:0031124;mRNA 3'-end processing;0.0226428531353947!GO:0008022;protein C-terminus binding;0.0226428531353947!GO:0006643;membrane lipid metabolic process;0.0227434561578798!GO:0030119;AP-type membrane coat adaptor complex;0.0227851753977466!GO:0045767;regulation of anti-apoptosis;0.0230666009755689!GO:0015992;proton transport;0.0231102560406715!GO:0030137;COPI-coated vesicle;0.0232316228608262!GO:0005869;dynactin complex;0.0241156694422151!GO:0016605;PML body;0.0243923521260858!GO:0016570;histone modification;0.0244468934009869!GO:0051098;regulation of binding;0.0245052811749035!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0250693321351091!GO:0007346;regulation of progression through mitotic cell cycle;0.0251870051524157!GO:0030131;clathrin adaptor complex;0.02527805082804!GO:0000139;Golgi membrane;0.0256933601185916!GO:0005669;transcription factor TFIID complex;0.0257040627440455!GO:0015980;energy derivation by oxidation of organic compounds;0.0259633532395614!GO:0007004;telomere maintenance via telomerase;0.0261599381706707!GO:0035035;histone acetyltransferase binding;0.02680454345618!GO:0001836;release of cytochrome c from mitochondria;0.0270497526099315!GO:0043407;negative regulation of MAP kinase activity;0.0271740215949916!GO:0042054;histone methyltransferase activity;0.0272833402506863!GO:0030132;clathrin coat of coated pit;0.0284447563904784!GO:0045815;positive regulation of gene expression, epigenetic;0.0289341101408054!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0298895410836671!GO:0030660;Golgi-associated vesicle membrane;0.0300846285503475!GO:0019883;antigen processing and presentation of endogenous antigen;0.0305283769573501!GO:0006644;phospholipid metabolic process;0.0305789343238426!GO:0004722;protein serine/threonine phosphatase activity;0.0311465028315945!GO:0043433;negative regulation of transcription factor activity;0.0311660419993553!GO:0030218;erythrocyte differentiation;0.0320172212269692!GO:0042608;T cell receptor binding;0.0320272933219183!GO:0031123;RNA 3'-end processing;0.0327341651421698!GO:0046834;lipid phosphorylation;0.033087691056437!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0331144742468244!GO:0000228;nuclear chromosome;0.033730136257475!GO:0003711;transcription elongation regulator activity;0.0337765129114075!GO:0040008;regulation of growth;0.0342846592694615!GO:0009607;response to biotic stimulus;0.0349801291449587!GO:0046519;sphingoid metabolic process;0.0350130420669515!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0350130420669515!GO:0030100;regulation of endocytosis;0.0354788189416356!GO:0007041;lysosomal transport;0.0355538753822697!GO:0000303;response to superoxide;0.0369146290715757!GO:0051101;regulation of DNA binding;0.038719230883514!GO:0007266;Rho protein signal transduction;0.0389774642331786!GO:0000819;sister chromatid segregation;0.0396516604947432!GO:0000018;regulation of DNA recombination;0.0402911902886851!GO:0007162;negative regulation of cell adhesion;0.0403083990851882!GO:0045603;positive regulation of endothelial cell differentiation;0.0406372122869732!GO:0005057;receptor signaling protein activity;0.0407684823767028!GO:0043492;ATPase activity, coupled to movement of substances;0.0409514049696304!GO:0006406;mRNA export from nucleus;0.0411815449540457!GO:0005832;chaperonin-containing T-complex;0.0420955580318055!GO:0008147;structural constituent of bone;0.0424141273628844!GO:0015923;mannosidase activity;0.0424141273628844!GO:0000152;nuclear ubiquitin ligase complex;0.0429931186144324!GO:0050811;GABA receptor binding;0.0430631460980311!GO:0003899;DNA-directed RNA polymerase activity;0.0437443045814982!GO:0043130;ubiquitin binding;0.0439092670628759!GO:0032182;small conjugating protein binding;0.0439092670628759!GO:0051223;regulation of protein transport;0.0439092670628759!GO:0019079;viral genome replication;0.0441718994117078!GO:0008097;5S rRNA binding;0.0443564955444359!GO:0042770;DNA damage response, signal transduction;0.0446288187325581!GO:0006595;polyamine metabolic process;0.0448842157583127!GO:0005741;mitochondrial outer membrane;0.0450623790821801!GO:0002378;immunoglobulin biosynthetic process;0.0450623790821801!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0450623790821801!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0450623790821801!GO:0051238;sequestering of metal ion;0.0450623790821801!GO:0032763;regulation of mast cell cytokine production;0.0450623790821801!GO:0032762;mast cell cytokine production;0.0450623790821801!GO:0046489;phosphoinositide biosynthetic process;0.0452280878135162!GO:0046474;glycerophospholipid biosynthetic process;0.0459015295934442!GO:0042578;phosphoric ester hydrolase activity;0.0459015295934442!GO:0018196;peptidyl-asparagine modification;0.0461631191190136!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0461631191190136!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0463180159365302!GO:0042613;MHC class II protein complex;0.0470576077966189!GO:0043596;nuclear replication fork;0.0476896706408192!GO:0006414;translational elongation;0.0478418385795384!GO:0051059;NF-kappaB binding;0.0492885419436198!GO:0021542;dentate gyrus development;0.049679559299928!GO:0000339;RNA cap binding;0.049679559299928 | |||
|sample_id=10043 | |sample_id=10043 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 103: | ||
|sample_tissue=thymus | |sample_tissue=thymus | ||
|top_motifs=TLX2:3.72434949324;NFY{A,B,C}:2.48460326807;TBP:2.33138856115;FOXO1,3,4:2.12581723215;ELF1,2,4:2.09301107077;LMO2:1.92040451403;RORA:1.76651908811;ETS1,2:1.7655837006;SP1:1.72438490764;TGIF1:1.70450495212;STAT1,3:1.56540712616;RUNX1..3:1.52070379162;HBP1_HMGB_SSRP1_UBTF:1.50467093538;SPZ1:1.46761157441;GATA6:1.45013710444;PATZ1:1.44984397345;SMAD1..7,9:1.41334943326;EP300:1.39791393415;BREu{core}:1.38496431209;BPTF:1.35758200096;DMAP1_NCOR{1,2}_SMARC:1.31781949541;MAZ:1.2431115645;FOXN1:1.19145459492;SPI1:1.18834342643;NRF1:1.1594112192;T:1.15424038537;FOX{D1,D2}:1.15193096807;ZEB1:1.15015904149;SREBF1,2:1.1471074969;RREB1:1.14424639408;MYOD1:1.14264060375;RBPJ:1.13767925905;PAX3,7:1.12209102925;ZNF238:1.10241015425;POU2F1..3:1.09792889858;MZF1:1.07317142554;SNAI1..3:1.06081162261;ZNF143:1.0469299084;IRF1,2:1.0375772187;SPIB:1.02668413479;PBX1:1.01023761605;XCPE1{core}:0.949408194425;GFI1:0.926749695116;RFX2..5_RFXANK_RFXAP:0.917330093574;SOX{8,9,10}:0.911423787652;PAX6:0.84527733159;MYB:0.832049544933;E2F1..5:0.802429995976;SOX5:0.788657082322;FOXA2:0.784720590206;ATF2:0.763798864975;IRF7:0.760398845079;ZNF148:0.743408040643;MYFfamily:0.702929493118;SOX2:0.70223757977;IKZF2:0.680513531973;TFAP4:0.677222812784;HSF1,2:0.66454150196;FOX{F1,F2,J1}:0.628922021834;JUN:0.627735479491;ATF4:0.626874206961;ELK1,4_GABP{A,B1}:0.621207899298;LEF1_TCF7_TCF7L1,2:0.583836159519;AR:0.569714570979;CREB1:0.569652484073;MED-1{core}:0.526049905955;NKX6-1,2:0.520865670607;EGR1..3:0.517457883394;MTE{core}:0.465328346349;FOXP3:0.433311577908;FOXP1:0.427021403247;ZNF384:0.406784963034;NFATC1..3:0.367880527024;ATF5_CREB3:0.317826090252;ZFP161:0.294970997477;NKX2-1,4:0.27489026312;NFKB1_REL_RELA:0.259116626757;EN1,2:0.239081888409;NANOG{mouse}:0.230013354698;MYBL2:0.213785034952;SRF:0.201650315399;NKX2-3_NKX2-5:0.175732559082;POU5F1:0.149553903844;AIRE:0.146831809487;DBP:0.133822912026;NHLH1,2:0.121439796429;TOPORS:0.0932596687468;CDX1,2,4:0.0929889751152;PRDM1:0.0862775040755;GTF2I:0.0166192457498;GTF2A1,2:0.0105907340686;TP53:0.00064029286149;PAX2:-0.00771868797615;HAND1,2:-0.0284266768699;POU3F1..4:-0.044783694041;CUX2:-0.0631808509699;MAFB:-0.0638543461061;MEF2{A,B,C,D}:-0.0722293048209;TBX4,5:-0.106505413647;TFCP2:-0.117838741344;GFI1B:-0.122488604999;CRX:-0.134416006425;GATA4:-0.13570190984;STAT2,4,6:-0.137600593193;HIC1:-0.152158403777;ZBTB16:-0.152192590748;NANOG:-0.166595338429;TAL1_TCF{3,4,12}:-0.16929802603;VSX1,2:-0.188819391994;HMX1:-0.221755681987;FOX{I1,J2}:-0.225020601801;MTF1:-0.244092923252;FOXQ1:-0.244347018833;TFAP2B:-0.266014245235;HNF1A:-0.287124287167;NR3C1:-0.292627283615;PAX5:-0.294895731515;CDC5L:-0.308614497794;GCM1,2:-0.31096848847;HNF4A_NR2F1,2:-0.313423392352;TFDP1:-0.321988333387;TFAP2{A,C}:-0.324783908519;CEBPA,B_DDIT3:-0.324795495622;GLI1..3:-0.353902335581;POU1F1:-0.410714809971;REST:-0.428582639592;SOX17:-0.443704224311;POU6F1:-0.444843581672;NR5A1,2:-0.446868037269;ATF6:-0.452166778689;ARID5B:-0.465285556076;HES1:-0.46580142948;HOXA9_MEIS1:-0.478698946475;KLF4:-0.490179002296;PAX4:-0.492860490983;ESR1:-0.496029486528;OCT4_SOX2{dimer}:-0.499334814591;FOXM1:-0.500170193507;HIF1A:-0.536310139181;PITX1..3:-0.543307857805;NFIL3:-0.556315568032;HMGA1,2:-0.605094721728;YY1:-0.610302500839;AHR_ARNT_ARNT2:-0.61689651681;ZIC1..3:-0.6192413823;TEAD1:-0.634529809276;RFX1:-0.675730226368;PRRX1,2:-0.678191237823;EVI1:-0.688910151314;HLF:-0.704597382857;GZF1:-0.705667176951;bHLH_family:-0.720868215138;FOS_FOS{B,L1}_JUN{B,D}:-0.721371472125;EBF1:-0.757545217246;FOSL2:-0.821869362927;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.825482217421;TLX1..3_NFIC{dimer}:-0.839500626911;BACH2:-0.853158164317;FOXD3:-0.891055804651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.929658327526;HOX{A6,A7,B6,B7}:-0.931482665126;FOXL1:-0.947075730671;NKX3-2:-0.956809982628;ALX4:-0.972390006854;NFE2:-0.980460419577;RXR{A,B,G}:-1.00122453146;NFE2L2:-1.0079141577;ZNF423:-1.136475041;PAX1,9:-1.16188149252;ALX1:-1.19118903963;NFIX:-1.22215824774;STAT5{A,B}:-1.32937678185;PAX8:-1.34603391875;ADNP_IRX_SIX_ZHX:-1.35313636783;NR1H4:-1.3549257673;LHX3,4:-1.39091337443;NKX3-1:-1.40035194171;HOX{A4,D4}:-1.43551084981;ZBTB6:-1.43703734946;XBP1:-1.46908294541;NKX2-2,8:-1.4790333537;UFEwm:-1.49464474623;NR6A1:-1.51537862402;RXRA_VDR{dimer}:-1.52931720618;PDX1:-1.5556402753;IKZF1:-1.61144942891;TEF:-1.72320186589;NFE2L1:-1.82204747634;ONECUT1,2:-1.89565067391;PPARG:-1.92756669031;ESRRA:-2.10837016065;HOX{A5,B5}:-2.25128302993 | |top_motifs=TLX2:3.72434949324;NFY{A,B,C}:2.48460326807;TBP:2.33138856115;FOXO1,3,4:2.12581723215;ELF1,2,4:2.09301107077;LMO2:1.92040451403;RORA:1.76651908811;ETS1,2:1.7655837006;SP1:1.72438490764;TGIF1:1.70450495212;STAT1,3:1.56540712616;RUNX1..3:1.52070379162;HBP1_HMGB_SSRP1_UBTF:1.50467093538;SPZ1:1.46761157441;GATA6:1.45013710444;PATZ1:1.44984397345;SMAD1..7,9:1.41334943326;EP300:1.39791393415;BREu{core}:1.38496431209;BPTF:1.35758200096;DMAP1_NCOR{1,2}_SMARC:1.31781949541;MAZ:1.2431115645;FOXN1:1.19145459492;SPI1:1.18834342643;NRF1:1.1594112192;T:1.15424038537;FOX{D1,D2}:1.15193096807;ZEB1:1.15015904149;SREBF1,2:1.1471074969;RREB1:1.14424639408;MYOD1:1.14264060375;RBPJ:1.13767925905;PAX3,7:1.12209102925;ZNF238:1.10241015425;POU2F1..3:1.09792889858;MZF1:1.07317142554;SNAI1..3:1.06081162261;ZNF143:1.0469299084;IRF1,2:1.0375772187;SPIB:1.02668413479;PBX1:1.01023761605;XCPE1{core}:0.949408194425;GFI1:0.926749695116;RFX2..5_RFXANK_RFXAP:0.917330093574;SOX{8,9,10}:0.911423787652;PAX6:0.84527733159;MYB:0.832049544933;E2F1..5:0.802429995976;SOX5:0.788657082322;FOXA2:0.784720590206;ATF2:0.763798864975;IRF7:0.760398845079;ZNF148:0.743408040643;MYFfamily:0.702929493118;SOX2:0.70223757977;IKZF2:0.680513531973;TFAP4:0.677222812784;HSF1,2:0.66454150196;FOX{F1,F2,J1}:0.628922021834;JUN:0.627735479491;ATF4:0.626874206961;ELK1,4_GABP{A,B1}:0.621207899298;LEF1_TCF7_TCF7L1,2:0.583836159519;AR:0.569714570979;CREB1:0.569652484073;MED-1{core}:0.526049905955;NKX6-1,2:0.520865670607;EGR1..3:0.517457883394;MTE{core}:0.465328346349;FOXP3:0.433311577908;FOXP1:0.427021403247;ZNF384:0.406784963034;NFATC1..3:0.367880527024;ATF5_CREB3:0.317826090252;ZFP161:0.294970997477;NKX2-1,4:0.27489026312;NFKB1_REL_RELA:0.259116626757;EN1,2:0.239081888409;NANOG{mouse}:0.230013354698;MYBL2:0.213785034952;SRF:0.201650315399;NKX2-3_NKX2-5:0.175732559082;POU5F1:0.149553903844;AIRE:0.146831809487;DBP:0.133822912026;NHLH1,2:0.121439796429;TOPORS:0.0932596687468;CDX1,2,4:0.0929889751152;PRDM1:0.0862775040755;GTF2I:0.0166192457498;GTF2A1,2:0.0105907340686;TP53:0.00064029286149;PAX2:-0.00771868797615;HAND1,2:-0.0284266768699;POU3F1..4:-0.044783694041;CUX2:-0.0631808509699;MAFB:-0.0638543461061;MEF2{A,B,C,D}:-0.0722293048209;TBX4,5:-0.106505413647;TFCP2:-0.117838741344;GFI1B:-0.122488604999;CRX:-0.134416006425;GATA4:-0.13570190984;STAT2,4,6:-0.137600593193;HIC1:-0.152158403777;ZBTB16:-0.152192590748;NANOG:-0.166595338429;TAL1_TCF{3,4,12}:-0.16929802603;VSX1,2:-0.188819391994;HMX1:-0.221755681987;FOX{I1,J2}:-0.225020601801;MTF1:-0.244092923252;FOXQ1:-0.244347018833;TFAP2B:-0.266014245235;HNF1A:-0.287124287167;NR3C1:-0.292627283615;PAX5:-0.294895731515;CDC5L:-0.308614497794;GCM1,2:-0.31096848847;HNF4A_NR2F1,2:-0.313423392352;TFDP1:-0.321988333387;TFAP2{A,C}:-0.324783908519;CEBPA,B_DDIT3:-0.324795495622;GLI1..3:-0.353902335581;POU1F1:-0.410714809971;REST:-0.428582639592;SOX17:-0.443704224311;POU6F1:-0.444843581672;NR5A1,2:-0.446868037269;ATF6:-0.452166778689;ARID5B:-0.465285556076;HES1:-0.46580142948;HOXA9_MEIS1:-0.478698946475;KLF4:-0.490179002296;PAX4:-0.492860490983;ESR1:-0.496029486528;OCT4_SOX2{dimer}:-0.499334814591;FOXM1:-0.500170193507;HIF1A:-0.536310139181;PITX1..3:-0.543307857805;NFIL3:-0.556315568032;HMGA1,2:-0.605094721728;YY1:-0.610302500839;AHR_ARNT_ARNT2:-0.61689651681;ZIC1..3:-0.6192413823;TEAD1:-0.634529809276;RFX1:-0.675730226368;PRRX1,2:-0.678191237823;EVI1:-0.688910151314;HLF:-0.704597382857;GZF1:-0.705667176951;bHLH_family:-0.720868215138;FOS_FOS{B,L1}_JUN{B,D}:-0.721371472125;EBF1:-0.757545217246;FOSL2:-0.821869362927;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.825482217421;TLX1..3_NFIC{dimer}:-0.839500626911;BACH2:-0.853158164317;FOXD3:-0.891055804651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.929658327526;HOX{A6,A7,B6,B7}:-0.931482665126;FOXL1:-0.947075730671;NKX3-2:-0.956809982628;ALX4:-0.972390006854;NFE2:-0.980460419577;RXR{A,B,G}:-1.00122453146;NFE2L2:-1.0079141577;ZNF423:-1.136475041;PAX1,9:-1.16188149252;ALX1:-1.19118903963;NFIX:-1.22215824774;STAT5{A,B}:-1.32937678185;PAX8:-1.34603391875;ADNP_IRX_SIX_ZHX:-1.35313636783;NR1H4:-1.3549257673;LHX3,4:-1.39091337443;NKX3-1:-1.40035194171;HOX{A4,D4}:-1.43551084981;ZBTB6:-1.43703734946;XBP1:-1.46908294541;NKX2-2,8:-1.4790333537;UFEwm:-1.49464474623;NR6A1:-1.51537862402;RXRA_VDR{dimer}:-1.52931720618;PDX1:-1.5556402753;IKZF1:-1.61144942891;TEF:-1.72320186589;NFE2L1:-1.82204747634;ONECUT1,2:-1.89565067391;PPARG:-1.92756669031;ESRRA:-2.10837016065;HOX{A5,B5}:-2.25128302993 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10043-101F7;search_select_hide=table117:FF:10043-101F7 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | thymus, fetal, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10650 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10650
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10650
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0341 |
| 10 | 10 | 0.104 |
| 100 | 100 | 0.346 |
| 101 | 101 | 0.8 |
| 102 | 102 | 0.991 |
| 103 | 103 | 0.263 |
| 104 | 104 | 0.864 |
| 105 | 105 | 0.444 |
| 106 | 106 | 0.00905 |
| 107 | 107 | 0.055 |
| 108 | 108 | 0.213 |
| 109 | 109 | 0.0816 |
| 11 | 11 | 0.143 |
| 110 | 110 | 0.0992 |
| 111 | 111 | 0.0277 |
| 112 | 112 | 0.139 |
| 113 | 113 | 0.149 |
| 114 | 114 | 4.04424e-4 |
| 115 | 115 | 0.131 |
| 116 | 116 | 0.137 |
| 117 | 117 | 0.681 |
| 118 | 118 | 0.116 |
| 119 | 119 | 0.115 |
| 12 | 12 | 0.739 |
| 120 | 120 | 0.348 |
| 121 | 121 | 0.133 |
| 122 | 122 | 0.616 |
| 123 | 123 | 0.699 |
| 124 | 124 | 0.318 |
| 125 | 125 | 0.406 |
| 126 | 126 | 0.571 |
| 127 | 127 | 0.806 |
| 128 | 128 | 0.0652 |
| 129 | 129 | 0.819 |
| 13 | 13 | 0.248 |
| 130 | 130 | 0.0247 |
| 131 | 131 | 0.745 |
| 132 | 132 | 0.768 |
| 133 | 133 | 0.592 |
| 134 | 134 | 0.764 |
| 135 | 135 | 0.0915 |
| 136 | 136 | 0.739 |
| 137 | 137 | 0.307 |
| 138 | 138 | 0.585 |
| 139 | 139 | 0.0822 |
| 14 | 14 | 0.664 |
| 140 | 140 | 0.0178 |
| 141 | 141 | 0.129 |
| 142 | 142 | 0.088 |
| 143 | 143 | 0.784 |
| 144 | 144 | 0.429 |
| 145 | 145 | 0.431 |
| 146 | 146 | 0.562 |
| 147 | 147 | 0.242 |
| 148 | 148 | 0.079 |
| 149 | 149 | 0.0713 |
| 15 | 15 | 0.16 |
| 150 | 150 | 0.359 |
| 151 | 151 | 0.538 |
| 152 | 152 | 0.0355 |
| 153 | 153 | 0.978 |
| 154 | 154 | 0.438 |
| 155 | 155 | 0.415 |
| 156 | 156 | 0.304 |
| 157 | 157 | 0.324 |
| 158 | 158 | 0.966 |
| 159 | 159 | 0.882 |
| 16 | 16 | 0.0759 |
| 160 | 160 | 0.0982 |
| 161 | 161 | 0.74 |
| 162 | 162 | 0.365 |
| 163 | 163 | 0.636 |
| 164 | 164 | 0.0182 |
| 165 | 165 | 0.972 |
| 166 | 166 | 0.655 |
| 167 | 167 | 0.0788 |
| 168 | 168 | 0.454 |
| 169 | 169 | 0.00121 |
| 17 | 17 | 0.152 |
| 18 | 18 | 0.0468 |
| 19 | 19 | 0.025 |
| 2 | 2 | 0.786 |
| 20 | 20 | 0.236 |
| 21 | 21 | 0.608 |
| 22 | 22 | 0.152 |
| 23 | 23 | 0.293 |
| 24 | 24 | 0.856 |
| 25 | 25 | 0.694 |
| 26 | 26 | 0.122 |
| 27 | 27 | 0.542 |
| 28 | 28 | 0.741 |
| 29 | 29 | 0.291 |
| 3 | 3 | 0.221 |
| 30 | 30 | 0.505 |
| 31 | 31 | 0.339 |
| 32 | 32 | 0.00731 |
| 33 | 33 | 0.38 |
| 34 | 34 | 0.974 |
| 35 | 35 | 0.246 |
| 36 | 36 | 0.103 |
| 37 | 37 | 0.0382 |
| 38 | 38 | 0.508 |
| 39 | 39 | 0.285 |
| 4 | 4 | 0.938 |
| 40 | 40 | 0.281 |
| 41 | 41 | 0.435 |
| 42 | 42 | 0.87 |
| 43 | 43 | 0.229 |
| 44 | 44 | 0.483 |
| 45 | 45 | 0.847 |
| 46 | 46 | 0.0755 |
| 47 | 47 | 0.296 |
| 48 | 48 | 0.475 |
| 49 | 49 | 0.289 |
| 5 | 5 | 0.314 |
| 50 | 50 | 0.959 |
| 51 | 51 | 0.452 |
| 52 | 52 | 0.51 |
| 53 | 53 | 0.646 |
| 54 | 54 | 0.426 |
| 55 | 55 | 0.234 |
| 56 | 56 | 0.721 |
| 57 | 57 | 0.0544 |
| 58 | 58 | 0.888 |
| 59 | 59 | 0.182 |
| 6 | 6 | 0.626 |
| 60 | 60 | 0.352 |
| 61 | 61 | 0.854 |
| 62 | 62 | 0.553 |
| 63 | 63 | 0.288 |
| 64 | 64 | 0.245 |
| 65 | 65 | 0.261 |
| 66 | 66 | 0.198 |
| 67 | 67 | 0.166 |
| 68 | 68 | 0.448 |
| 69 | 69 | 0.508 |
| 7 | 7 | 0.862 |
| 70 | 70 | 0.0119 |
| 71 | 71 | 0.0636 |
| 72 | 72 | 0.49 |
| 73 | 73 | 0.015 |
| 74 | 74 | 0.574 |
| 75 | 75 | 0.231 |
| 76 | 76 | 0.19 |
| 77 | 77 | 0.0416 |
| 78 | 78 | 0.663 |
| 79 | 79 | 0.289 |
| 8 | 8 | 0.00402 |
| 80 | 80 | 0.0055 |
| 81 | 81 | 0.304 |
| 82 | 82 | 0.247 |
| 83 | 83 | 0.865 |
| 84 | 84 | 0.337 |
| 85 | 85 | 0.0184 |
| 86 | 86 | 0.914 |
| 87 | 87 | 0.375 |
| 88 | 88 | 0.323 |
| 89 | 89 | 0.00868 |
| 9 | 9 | 0.933 |
| 90 | 90 | 0.0485 |
| 91 | 91 | 0.563 |
| 92 | 92 | 0.158 |
| 93 | 93 | 0.82 |
| 94 | 94 | 0.246 |
| 95 | 95 | 0.184 |
| 96 | 96 | 0.813 |
| 97 | 97 | 0.624 |
| 98 | 98 | 0.0718 |
| 99 | 99 | 0.141 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10650
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010043 human thymus - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002370 (thymus)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0004177 (hemopoietic organ)
0005057 (immune organ)
0002530 (gland)
0005058 (hemolymphoid system gland)
0010317 (germ layer / neural crest derived structure)
0000153 (anterior region of body)
0002390 (hematopoietic system)
0000949 (endocrine system)
0002193 (hemolymphoid system)
0002405 (immune system)
0009113 (thymic region)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010043 (human thymus - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
