FF:10045-101F9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100 | |DRA_sample_Accession=CAGE@SAMD00005649 | ||
|accession_numbers=CAGE;DRX008671;DRR009543;DRZ000968;DRZ002353;DRZ012318;DRZ013703 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010045 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.72!525.39!TCF21;;chr2:114036488..114036504,-!p1@PAX8!2.39!243.13!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.11!127.05!HNF1B;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.04!107.69!POU3F3;;chr13:72441315..72441454,-!p1@DACH1!2.02!199.75!DACH1;;chr17:46682321..46682362,-!p1@HOXB6!2.02!102.92!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.99!97.04!TFCP2L1;;chr7:27192185..27192209,-!p1@HOXA3!1.92!81.99!HOXA3;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.67!ELF3;;chr11:32457413..32457431,-!p2@WT1!1.82!65.10!WT1;;chr10:102505327..102505344,+!p1@PAX2!1.80!62.16!PAX2;;chr19:46800289..46800327,+!p2@HIF3A!1.79!60.95!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.79!60.53!HOXC5;;chr11:32457075..32457095,-!p1@WT1!1.78!59.06!WT1;;chr17:46667594..46667619,-!p1@HOXB3!1.77!57.33!HOXB3;;chr2:177001290..177001315,+!p1@HOXD3!1.75!55.44!HOXD3;;chr7:27205136..27205164,-!p1@HOXA9!1.68!46.74!HOXA9;;chr3:128212033..128212051,-!p1@GATA2!1.62!40.23!GATA2;;chr10:119302232..119302265,+!p1@EMX2!1.59!38.29!EMX2;;chr10:8096631..8096660,+!p1@GATA3!1.57!43.43!GATA3;;chr1:201979703..201979721,+!p2@ELF3!1.57!36.19!ELF3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.56!35.62!LHX1;;chr20:62680984..62680999,-!p1@SOX18!1.53!43.07!SOX18;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.42!HIF3A;;chr19:12348371..12348386,-!p5@ZNF44!1.50!30.69!ZNF44;;chr21:39870339..39870443,-!p1@ERG!1.50!30.53!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.48!34.20!MECOM;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.47!28.64!POU3F3;;chr1:40105299..40105326,-!p1@HEYL!1.47!28.54!HEYL;;chr13:72441074..72441172,-!p2@DACH1!1.46!27.91!DACH1;;chr7:27224842..27224872,-!p1@HOXA11!1.45!27.43!HOXA11;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.45!26.96!PEG3;;chrX:85403445..85403479,+!p2@DACH2!1.44!26.59!DACH2;;chr6:19837592..19837621,+!p1@ID4!1.43!151.59!ID4;;chr17:46703687..46703740,-!p1@HOXB9!1.42!25.39!HOXB9;;chr5:92918919..92918942,+!p1@NR2F1!1.40!105.49!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.40!72.91!TBX2;;chr16:86600426..86600441,+!p1@FOXC2!1.40!57.75!FOXC2;;chr2:73144617..73144654,+!p1@EMX1!1.40!24.39!EMX1;;chr2:176973498..176973524,+!p1@HOXD10!1.40!24.23!HOXD10;;chr20:39317868..39317884,-!p1@MAFB!1.39!266.52!MAFB;;chr17:46692624..46692659,-!p3@HOXB8!1.37!22.19!HOXB8;;chr7:27213893..27213954,-!p1@HOXA10!1.36!22.03!HOXA10;;chr21:38071430..38071456,+!p1@SIM2!1.36!21.87!SIM2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.19!ZEB2;;chr11:34642612..34642646,+!p1@EHF!1.35!21.56!EHF;;chr2:176981499..176981522,+!p2@HOXD10!1.34!20.72!HOXD10;;chr17:46622205..46622218,-!p3@HOXB2!1.33!23.71!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!1.33!20.30!KDM5D;;chr11:113930425..113930471,+!p1@ZBTB16!1.32!28.54!ZBTB16;;chr7:27224795..27224840,-!p2@HOXA11!1.32!20.09!HOXA11;;chr12:54393880..54393962,+!p1@HOXC9!1.32!20.04!HOXC9;;chr2:176994408..176994492,+!p1@HOXD8!1.32!19.72!HOXD8;;chr17:46622440..46622477,-!p5@HOXB2!1.30!21.03!HOXB2;;chr3:69915369..69915381,+!p4@MITF!1.29!18.67!MITF;;chr20:43029862..43029900,+!p1@HNF4A!1.29!18.57!HNF4A;;chr10:119302268..119302282,+!p4@EMX2!1.29!18.36!EMX2;;chr5:3595961..3595975,+!p3@IRX1!1.28!18.20!IRX1;;chr5:2751762..2751784,-!p1@IRX2!1.27!17.83!IRX2;;chr1:209979467..209979494,-!p1@IRF6!1.26!19.51!IRF6;;chr1:27240455..27240474,-!p1@NR0B2!1.26!17.36!NR0B2;;chr15:57511609..57511651,+!p2@TCF12!1.25!27.85!TCF12;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.84!IRX2;;chr1:217311025..217311049,-!p10@ESRRG!1.24!16.52!ESRRG;;chr3:69915385..69915438,+!p3@MITF!1.24!16.42!MITF;;chr15:96873984..96873999,+!p3@NR2F2!1.23!116.40!NR2F2;;chr12:54379029..54379057,+!p2@HOXC10!1.23!16.10!HOXC10;;chr17:46675558..46675577,-!p2@HOXB6!1.23!15.84!HOXB6;;chr17:46667628..46667642,-!p2@HOXB3!1.22!15.63!HOXB3;;chr5:3595934..3595957,+!p2@IRX1!1.22!15.42!IRX1;;chr2:16080659..16080685,+!p1@MYCN!1.21!15.21!MYCN;;chr8:102504651..102504683,+!p1@GRHL2!1.21!15.11!GRHL2;;chr11:16419037..16419064,-!p3@SOX6!1.21!15.05!SOX6;;chr4:149363494..149363543,-!p1@NR3C2!1.20!14.79!NR3C2;;chr5:169532896..169532904,+!p1@FOXI1!1.19!14.58!FOXI1;;chr3:168865250..168865272,-!p5@MECOM!1.19!14.53!MECOM;;chr17:46667561..46667572,-!p4@HOXB3!1.19!14.48!HOXB3;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.08!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.18!22.82!FOXQ1;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.85!SOX17;;chr17:46692603..46692621,-!p6@HOXB8!1.17!13.74!HOXB8;;chr15:96873921..96873946,+!p1@NR2F2!1.16!373.32!NR2F2;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.38!HOXC10;;chr15:96874012..96874042,+!p2@NR2F2!1.14!114.30!NR2F2;;chr3:25469815..25469866,+!p3@RARB!1.14!12.75!RARB;;chr15:80696703..80696754,+!p1@ARNT2!1.13!16.79!ARNT2;;chr10:77161650..77161661,-!p4@ZNF503!1.12!16.94!ZNF503;;chr17:6926362..6926377,+!p1@BCL6B!1.12!12.22!BCL6B;;chr6:100912752..100912778,-!p2@SIM1!1.12!12.06!SIM1;;chr12:52445218..52445237,+!p1@NR4A1!1.11!148.60!NR4A1;;chr1:214161272..214161322,+!p1@PROX1!1.11!16.63!PROX1;;chr17:59477275..59477286,+!p3@TBX2!1.11!15.95!TBX2;;chr17:46703212..46703238,-!p2@HOXB9!1.11!11.96!HOXB9;;chr1:151804244..151804310,-!p1@RORC!1.11!11.91!RORC;;chr5:71803177..71803255,-!p1@ZNF366!1.11!11.75!ZNF366;;chr3:126076242..126076257,-!p1@KLF15!1.10!14.32!KLF15;;chr2:242556880..242556899,-!p5@THAP4!1.10!11.70!THAP4;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.70!PKNOX2;;chr13:72441506..72441562,-!p3@DACH1!1.10!11.64!DACH1;;chr8:10588010..10588030,-!p1@SOX7!1.10!11.64!SOX7;;chr2:176987463..176987479,+!p2@HOXD9!1.10!11.54!HOXD9;;chr5:92919100..92919135,+!p3@NR2F1!1.09!13.95!NR2F1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.09!11.44!HOXC5;;chr17:46690839..46690884,-!p1@HOXB8!1.09!11.38!HOXB8;;chr7:73038839..73038862,-!p1@MLXIPL!1.09!11.33!MLXIPL;;chr16:51185573..51185593,-!p3@SALL1!1.09!11.17!SALL1;;chr10:102505493..102505546,+!p2@PAX2!1.08!10.96!PAX2;;chr16:79634624..79634642,-!p1@MAF!1.07!42.86!MAF;;chr3:25469724..25469773,+!p1@RARB!1.07!15.58!RARB;;chr1:47903709..47903764,+!p1@BC169308!1.07!12.27!FOXD2;;chr17:46692457..46692484,-!p2@HOXB8!1.07!10.81!HOXB8;;chr10:119302150..119302163,+!p8@EMX2!1.07!10.75!EMX2;;chr7:27205106..27205134,-!p2@HOXA9!1.06!10.49!HOXA9;;chr6:10412600..10412637,-!p1@TFAP2A!1.05!17.00!TFAP2A;;chr17:53342311..53342400,+!p1@HLF!1.05!11.80!HLF;;chr10:102505954..102505973,+!p3@PAX2!1.05!10.33!PAX2;;chr4:149363475..149363492,-!p2@NR3C2!1.05!10.18!NR3C2;;chr2:176987441..176987454,+!p1@HOXD9!1.04!10.07!HOXD9;;chr10:102495147..102495159,+!p4@PAX2!1.04!9.86!PAX2;;chr12:85673868..85673881,+!p2@ALX1!1.04!9.86!ALX1;;chr7:27196217..27196246,-!p2@HOXA7!1.04!9.86!HOXA7;;chr11:61520075..61520136,+!p1@C11orf9!1.03!20.82!C11orf9;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.01!HOXB7;;chr11:47400078..47400106,-!p1@SPI1!1.03!9.76!SPI1;;chr5:3595977..3595999,+!p1@IRX1!1.03!9.70!IRX1;;chr3:114819124..114819200,-!p3@ZBTB20!1.02!22.40!ZBTB20;;chr11:113930291..113930339,+!p2@ZBTB16!1.02!15.63!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!1.02!10.96!PPARG;;chr10:119303078..119303169,+!p2@EMX2!1.02!9.39!EMX2;;chr22:41763452..41763466,+!p2@TEF!1.01!9.34!TEF;;chr1:2985760..2985774,+!p1@PRDM16!1.01!9.34!PRDM16;;chr16:51185172..51185197,-!p1@SALL1!1.01!9.28!SALL1;;chr2:177053386..177053402,+!p1@HOXD1!1.01!9.23!HOXD1;;chr17:74137321..74137337,-!p1@FOXJ1!1.01!9.18!FOXJ1;;chr10:8095593..8095625,+!p3@GATA3!1.00!10.70!GATA3;;chr6:50789717..50789729,+!p4@TFAP2B!1.00!9.07!TFAP2B;;chr2:176994077..176994091,+!p8@HOXD8!1.00!9.02!HOXD8;;chr12:52437488..52437507,+!p2@NR4A1!1.00!8.97!NR4A1;;chr6:10415276..10415341,-!p2@TFAP2A!0.99!10.91!TFAP2A;;chr11:34535332..34535347,-!p2@ELF5!0.99!8.81!ELF5;;chr2:176981526..176981543,+!p3@HOXD10!0.99!8.71!HOXD10;;chr2:25475120..25475176,-!p2@DNMT3A!0.98!11.70!DNMT3A;;chr20:61051039..61051057,-!p1@GATA5!0.98!8.66!GATA5;;chr10:119302182..119302196,+!p6@EMX2!0.98!8.45!EMX2;;chr1:164528410..164528428,+!p1@PBX1!0.97!63.73!PBX1;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.45!MEIS2;;chr1:10754477..10754517,-!p1@CASZ1!0.97!14.06!CASZ1;;chr11:128457446..128457461,-!p4@ETS1!0.96!8.08!ETS1;;chr12:121416340..121416360,+!p1@HNF1A!0.96!8.08!HNF1A;;chr3:114819101..114819121,-!p7@ZBTB20!0.96!8.08!ZBTB20;;chr17:1959369..1959388,+!p2@HIC1!0.95!21.61!HIC1;;chr20:2673383..2673441,+!p1@EBF4!0.95!12.80!EBF4;;chr11:113930401..113930422,+!p3@ZBTB16!0.95!7.97!ZBTB16;;chr7:1272522..1272537,+!p2@UNCX!0.95!7.82!UNCX;;chr1:204042233..204042249,+!p1@SOX13!0.94!49.83!SOX13;;chr16:79634595..79634620,-!p2@MAF!0.94!14.37!MAF;;chr3:25470156..25470227,+!p2@RARB!0.94!7.76!RARB;;chr3:128206762..128206781,-!p2@GATA2!0.93!48.31!GATA2;;chr3:126076264..126076305,-!p2@KLF15!0.93!10.60!KLF15;;chr10:8096772..8096787,+!p2@GATA3!0.93!8.92!GATA3;;chr18:42260840..42260860,+!p2@SETBP1!0.93!7.55!SETBP1;;chr3:169381183..169381205,-!p4@MECOM!0.93!7.50!MECOM;;chr17:46622229..46622257,-!p6@HOXB2!0.92!8.60!HOXB2;;chr11:65554528..65554546,+!p1@OVOL1!0.92!7.40!OVOL1;;chr16:51185489..51185501,-!p6@SALL1!0.92!7.24!SALL1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.91!8.97!L3MBTL4;;chr16:79634581..79634592,-!p4@MAF!0.91!7.19!MAF;;chr1:41174988..41175047,+!p4@NFYC!0.90!19.25!NFYC;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!0.90!6.98!POU3F3;;chr11:34535297..34535317,-!p1@ELF5!0.90!6.87!ELF5;;chr5:92918894..92918912,+!p2@NR2F1!0.89!22.98!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.89!6.82!NR2F1;;chr1:10856639..10856662,-!p2@CASZ1!0.89!6.71!CASZ1;;chr2:166326200..166326216,+!p1@CSRNP3!0.88!9.91!CSRNP3;;chr20:51588873..51588953,+!p1@TSHZ2!0.88!8.76!TSHZ2;;chr3:168865194..168865245,-!p3@MECOM!0.88!8.71!MECOM;;chr4:57522513..57522548,-!p4@HOPX!0.88!6.66!HOPX;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.61!CASZ1;;chr2:73144683..73144697,+!p3@EMX1!0.88!6.56!EMX1;;chr6:100912785..100912822,-!p1@SIM1!0.88!6.56!SIM1;;chr18:42260920..42260951,+!p4@SETBP1!0.88!6.50!SETBP1;;chr18:53068911..53068935,-!p4@TCF4!0.87!7.29!TCF4;;chr16:85932760..85932775,+!p1@IRF8!0.87!6.45!IRF8;;chr17:46703826..46703845,-!p3@HOXB9!0.87!6.40!HOXB9;;chr2:176971685..176971700,+!p6@HO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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.72!525.39!TCF21;;chr2:114036488..114036504,-!p1@PAX8!2.39!243.13!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.11!127.05!HNF1B;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.04!107.69!POU3F3;;chr13:72441315..72441454,-!p1@DACH1!2.02!199.75!DACH1;;chr17:46682321..46682362,-!p1@HOXB6!2.02!102.92!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.99!97.04!TFCP2L1;;chr7:27192185..27192209,-!p1@HOXA3!1.92!81.99!HOXA3;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.67!ELF3;;chr11:32457413..32457431,-!p2@WT1!1.82!65.10!WT1;;chr10:102505327..102505344,+!p1@PAX2!1.80!62.16!PAX2;;chr19:46800289..46800327,+!p2@HIF3A!1.79!60.95!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.79!60.53!HOXC5;;chr11:32457075..32457095,-!p1@WT1!1.78!59.06!WT1;;chr17:46667594..46667619,-!p1@HOXB3!1.77!57.33!HOXB3;;chr2:177001290..177001315,+!p1@HOXD3!1.75!55.44!HOXD3;;chr7:27205136..27205164,-!p1@HOXA9!1.68!46.74!HOXA9;;chr3:128212033..128212051,-!p1@GATA2!1.62!40.23!GATA2;;chr10:119302232..119302265,+!p1@EMX2!1.59!38.29!EMX2;;chr10:8096631..8096660,+!p1@GATA3!1.57!43.43!GATA3;;chr1:201979703..201979721,+!p2@ELF3!1.57!36.19!ELF3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.56!35.62!LHX1;;chr20:62680984..62680999,-!p1@SOX18!1.53!43.07!SOX18;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.42!HIF3A;;chr19:12348371..12348386,-!p5@ZNF44!1.50!30.69!ZNF44;;chr21:39870339..39870443,-!p1@ERG!1.50!30.53!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.48!34.20!MECOM;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.47!28.64!POU3F3;;chr1:40105299..40105326,-!p1@HEYL!1.47!28.54!HEYL;;chr13:72441074..72441172,-!p2@DACH1!1.46!27.91!DACH1;;chr7:27224842..27224872,-!p1@HOXA11!1.45!27.43!HOXA11;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.45!26.96!PEG3;;chrX:85403445..85403479,+!p2@DACH2!1.44!26.59!DACH2;;chr6:19837592..19837621,+!p1@ID4!1.43!151.59!ID4;;chr17:46703687..46703740,-!p1@HOXB9!1.42!25.39!HOXB9;;chr5:92918919..92918942,+!p1@NR2F1!1.40!105.49!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.40!72.91!TBX2;;chr16:86600426..86600441,+!p1@FOXC2!1.40!57.75!FOXC2;;chr2:73144617..73144654,+!p1@EMX1!1.40!24.39!EMX1;;chr2:176973498..176973524,+!p1@HOXD10!1.40!24.23!HOXD10;;chr20:39317868..39317884,-!p1@MAFB!1.39!266.52!MAFB;;chr17:46692624..46692659,-!p3@HOXB8!1.37!22.19!HOXB8;;chr7:27213893..27213954,-!p1@HOXA10!1.36!22.03!HOXA10;;chr21:38071430..38071456,+!p1@SIM2!1.36!21.87!SIM2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.19!ZEB2;;chr11:34642612..34642646,+!p1@EHF!1.35!21.56!EHF;;chr2:176981499..176981522,+!p2@HOXD10!1.34!20.72!HOXD10;;chr17:46622205..46622218,-!p3@HOXB2!1.33!23.71!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!1.33!20.30!KDM5D;;chr11:113930425..113930471,+!p1@ZBTB16!1.32!28.54!ZBTB16;;chr7:27224795..27224840,-!p2@HOXA11!1.32!20.09!HOXA11;;chr12:54393880..54393962,+!p1@HOXC9!1.32!20.04!HOXC9;;chr2:176994408..176994492,+!p1@HOXD8!1.32!19.72!HOXD8;;chr17:46622440..46622477,-!p5@HOXB2!1.30!21.03!HOXB2;;chr3:69915369..69915381,+!p4@MITF!1.29!18.67!MITF;;chr20:43029862..43029900,+!p1@HNF4A!1.29!18.57!HNF4A;;chr10:119302268..119302282,+!p4@EMX2!1.29!18.36!EMX2;;chr5:3595961..3595975,+!p3@IRX1!1.28!18.20!IRX1;;chr5:2751762..2751784,-!p1@IRX2!1.27!17.83!IRX2;;chr1:209979467..209979494,-!p1@IRF6!1.26!19.51!IRF6;;chr1:27240455..27240474,-!p1@NR0B2!1.26!17.36!NR0B2;;chr15:57511609..57511651,+!p2@TCF12!1.25!27.85!TCF12;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.84!IRX2;;chr1:217311025..217311049,-!p10@ESRRG!1.24!16.52!ESRRG;;chr3:69915385..69915438,+!p3@MITF!1.24!16.42!MITF;;chr15:96873984..96873999,+!p3@NR2F2!1.23!116.40!NR2F2;;chr12:54379029..54379057,+!p2@HOXC10!1.23!16.10!HOXC10;;chr17:46675558..46675577,-!p2@HOXB6!1.23!15.84!HOXB6;;chr17:46667628..46667642,-!p2@HOXB3!1.22!15.63!HOXB3;;chr5:3595934..3595957,+!p2@IRX1!1.22!15.42!IRX1;;chr2:16080659..16080685,+!p1@MYCN!1.21!15.21!MYCN;;chr8:102504651..102504683,+!p1@GRHL2!1.21!15.11!GRHL2;;chr11:16419037..16419064,-!p3@SOX6!1.21!15.05!SOX6;;chr4:149363494..149363543,-!p1@NR3C2!1.20!14.79!NR3C2;;chr5:169532896..169532904,+!p1@FOXI1!1.19!14.58!FOXI1;;chr3:168865250..168865272,-!p5@MECOM!1.19!14.53!MECOM;;chr17:46667561..46667572,-!p4@HOXB3!1.19!14.48!HOXB3;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.08!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.18!22.82!FOXQ1;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.85!SOX17;;chr17:46692603..46692621,-!p6@HOXB8!1.17!13.74!HOXB8;;chr15:96873921..96873946,+!p1@NR2F2!1.16!373.32!NR2F2;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.38!HOXC10;;chr15:96874012..96874042,+!p2@NR2F2!1.14!114.30!NR2F2;;chr3:25469815..25469866,+!p3@RARB!1.14!12.75!RARB;;chr15:80696703..80696754,+!p1@ARNT2!1.13!16.79!ARNT2;;chr10:77161650..77161661,-!p4@ZNF503!1.12!16.94!ZNF503;;chr17:6926362..6926377,+!p1@BCL6B!1.12!12.22!BCL6B;;chr6:100912752..100912778,-!p2@SIM1!1.12!12.06!SIM1;;chr12:52445218..52445237,+!p1@NR4A1!1.11!148.60!NR4A1;;chr1:214161272..214161322,+!p1@PROX1!1.11!16.63!PROX1;;chr17:59477275..59477286,+!p3@TBX2!1.11!15.95!TBX2;;chr17:46703212..46703238,-!p2@HOXB9!1.11!11.96!HOXB9;;chr1:151804244..151804310,-!p1@RORC!1.11!11.91!RORC;;chr5:71803177..71803255,-!p1@ZNF366!1.11!11.75!ZNF366;;chr3:126076242..126076257,-!p1@KLF15!1.10!14.32!KLF15;;chr2:242556880..242556899,-!p5@THAP4!1.10!11.70!THAP4;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.70!PKNOX2;;chr13:72441506..72441562,-!p3@DACH1!1.10!11.64!DACH1;;chr8:10588010..10588030,-!p1@SOX7!1.10!11.64!SOX7;;chr2:176987463..176987479,+!p2@HOXD9!1.10!11.54!HOXD9;;chr5:92919100..92919135,+!p3@NR2F1!1.09!13.95!NR2F1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.09!11.44!HOXC5;;chr17:46690839..46690884,-!p1@HOXB8!1.09!11.38!HOXB8;;chr7:73038839..73038862,-!p1@MLXIPL!1.09!11.33!MLXIPL;;chr16:51185573..51185593,-!p3@SALL1!1.09!11.17!SALL1;;chr10:102505493..102505546,+!p2@PAX2!1.08!10.96!PAX2;;chr16:79634624..79634642,-!p1@MAF!1.07!42.86!MAF;;chr3:25469724..25469773,+!p1@RARB!1.07!15.58!RARB;;chr1:47903709..47903764,+!p1@BC169308!1.07!12.27!FOXD2;;chr17:46692457..46692484,-!p2@HOXB8!1.07!10.81!HOXB8;;chr10:119302150..119302163,+!p8@EMX2!1.07!10.75!EMX2;;chr7:27205106..27205134,-!p2@HOXA9!1.06!10.49!HOXA9;;chr6:10412600..10412637,-!p1@TFAP2A!1.05!17.00!TFAP2A;;chr17:53342311..53342400,+!p1@HLF!1.05!11.80!HLF;;chr10:102505954..102505973,+!p3@PAX2!1.05!10.33!PAX2;;chr4:149363475..149363492,-!p2@NR3C2!1.05!10.18!NR3C2;;chr2:176987441..176987454,+!p1@HOXD9!1.04!10.07!HOXD9;;chr10:102495147..102495159,+!p4@PAX2!1.04!9.86!PAX2;;chr12:85673868..85673881,+!p2@ALX1!1.04!9.86!ALX1;;chr7:27196217..27196246,-!p2@HOXA7!1.04!9.86!HOXA7;;chr11:61520075..61520136,+!p1@C11orf9!1.03!20.82!C11orf9;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.01!HOXB7;;chr11:47400078..47400106,-!p1@SPI1!1.03!9.76!SPI1;;chr5:3595977..3595999,+!p1@IRX1!1.03!9.70!IRX1;;chr3:114819124..114819200,-!p3@ZBTB20!1.02!22.40!ZBTB20;;chr11:113930291..113930339,+!p2@ZBTB16!1.02!15.63!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!1.02!10.96!PPARG;;chr10:119303078..119303169,+!p2@EMX2!1.02!9.39!EMX2;;chr22:41763452..41763466,+!p2@TEF!1.01!9.34!TEF;;chr1:2985760..2985774,+!p1@PRDM16!1.01!9.34!PRDM16;;chr16:51185172..51185197,-!p1@SALL1!1.01!9.28!SALL1;;chr2:177053386..177053402,+!p1@HOXD1!1.01!9.23!HOXD1;;chr17:74137321..74137337,-!p1@FOXJ1!1.01!9.18!FOXJ1;;chr10:8095593..8095625,+!p3@GATA3!1.00!10.70!GATA3;;chr6:50789717..50789729,+!p4@TFAP2B!1.00!9.07!TFAP2B;;chr2:176994077..176994091,+!p8@HOXD8!1.00!9.02!HOXD8;;chr12:52437488..52437507,+!p2@NR4A1!1.00!8.97!NR4A1;;chr6:10415276..10415341,-!p2@TFAP2A!0.99!10.91!TFAP2A;;chr11:34535332..34535347,-!p2@ELF5!0.99!8.81!ELF5;;chr2:176981526..176981543,+!p3@HOXD10!0.99!8.71!HOXD10;;chr2:25475120..25475176,-!p2@DNMT3A!0.98!11.70!DNMT3A;;chr20:61051039..61051057,-!p1@GATA5!0.98!8.66!GATA5;;chr10:119302182..119302196,+!p6@EMX2!0.98!8.45!EMX2;;chr1:164528410..164528428,+!p1@PBX1!0.97!63.73!PBX1;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.45!MEIS2;;chr1:10754477..10754517,-!p1@CASZ1!0.97!14.06!CASZ1;;chr11:128457446..128457461,-!p4@ETS1!0.96!8.08!ETS1;;chr12:121416340..121416360,+!p1@HNF1A!0.96!8.08!HNF1A;;chr3:114819101..114819121,-!p7@ZBTB20!0.96!8.08!ZBTB20;;chr17:1959369..1959388,+!p2@HIC1!0.95!21.61!HIC1;;chr20:2673383..2673441,+!p1@EBF4!0.95!12.80!EBF4;;chr11:113930401..113930422,+!p3@ZBTB16!0.95!7.97!ZBTB16;;chr7:1272522..1272537,+!p2@UNCX!0.95!7.82!UNCX;;chr1:204042233..204042249,+!p1@SOX13!0.94!49.83!SOX13;;chr16:79634595..79634620,-!p2@MAF!0.94!14.37!MAF;;chr3:25470156..25470227,+!p2@RARB!0.94!7.76!RARB;;chr3:128206762..128206781,-!p2@GATA2!0.93!48.31!GATA2;;chr3:126076264..126076305,-!p2@KLF15!0.93!10.60!KLF15;;chr10:8096772..8096787,+!p2@GATA3!0.93!8.92!GATA3;;chr18:42260840..42260860,+!p2@SETBP1!0.93!7.55!SETBP1;;chr3:169381183..169381205,-!p4@MECOM!0.93!7.50!MECOM;;chr17:46622229..46622257,-!p6@HOXB2!0.92!8.60!HOXB2;;chr11:65554528..65554546,+!p1@OVOL1!0.92!7.40!OVOL1;;chr16:51185489..51185501,-!p6@SALL1!0.92!7.24!SALL1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.91!8.97!L3MBTL4;;chr16:79634581..79634592,-!p4@MAF!0.91!7.19!MAF;;chr1:41174988..41175047,+!p4@NFYC!0.90!19.25!NFYC;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!0.90!6.98!POU3F3;;chr11:34535297..34535317,-!p1@ELF5!0.90!6.87!ELF5;;chr5:92918894..92918912,+!p2@NR2F1!0.89!22.98!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.89!6.82!NR2F1;;chr1:10856639..10856662,-!p2@CASZ1!0.89!6.71!CASZ1;;chr2:166326200..166326216,+!p1@CSRNP3!0.88!9.91!CSRNP3;;chr20:51588873..51588953,+!p1@TSHZ2!0.88!8.76!TSHZ2;;chr3:168865194..168865245,-!p3@MECOM!0.88!8.71!MECOM;;chr4:57522513..57522548,-!p4@HOPX!0.88!6.66!HOPX;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.61!CASZ1;;chr2:73144683..73144697,+!p3@EMX1!0.88!6.56!EMX1;;chr6:100912785..100912822,-!p1@SIM1!0.88!6.56!SIM1;;chr18:42260920..42260951,+!p4@SETBP1!0.88!6.50!SETBP1;;chr18:53068911..53068935,-!p4@TCF4!0.87!7.29!TCF4;;chr16:85932760..85932775,+!p1@IRF8!0.87!6.45!IRF8;;chr17:46703826..46703845,-!p3@HOXB9!0.87!6.40!HOXB9;;chr2:176971685..176971700,+!p6@HO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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10045-101F9 | |id=FF:10045-101F9 | ||
|is_a=EFO:0002091;;FF:0010045 | |is_a=EFO:0002091;;FF:0010045 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10652 | |||
|library_id_phase_based=2:CNhs10652 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10045 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10045 | |||
|name=kidney, fetal, pool1 | |name=kidney, fetal, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10652,LSID658,release008,COMPLETED | |profile_hcage=CNhs10652,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636584 | |rna_catalog_number=Cat:636584 | ||
| Line 58: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 101: | ||
|top_motifs=HNF1A:5.10119208143;SP1:3.01633342208;HNF4A_NR2F1,2:2.77052937934;MAZ:2.74338171259;TFCP2:2.26006426565;NKX2-3_NKX2-5:2.2352527381;PATZ1:2.17745681963;ADNP_IRX_SIX_ZHX:2.11186646255;MED-1{core}:2.06347690795;MZF1:2.04041667879;XCPE1{core}:1.98876644077;HIC1:1.95876607594;TFAP2{A,C}:1.92969345467;EP300:1.89872591837;PBX1:1.83264890166;HOX{A6,A7,B6,B7}:1.81613252205;TBP:1.79235762797;PAX5:1.73501918144;FOX{D1,D2}:1.68051892138;GTF2I:1.64744895721;TFAP2B:1.6094418305;RREB1:1.60085402349;FOXQ1:1.58441098776;RXRA_VDR{dimer}:1.52888632725;HBP1_HMGB_SSRP1_UBTF:1.50650435666;SNAI1..3:1.48022078381;VSX1,2:1.46510922243;SOX5:1.41584294711;GFI1:1.38578160153;EGR1..3:1.34335846127;TLX1..3_NFIC{dimer}:1.28690185623;SREBF1,2:1.28570704777;GTF2A1,2:1.25095750689;TEAD1:1.21688465523;ZEB1:1.21134361916;RBPJ:1.21004580934;PAX6:1.20021417208;STAT1,3:1.18855868251;T:1.17584069808;MTF1:1.14707312041;NKX3-2:1.1256283234;SPZ1:1.08615536545;GFI1B:1.06537211922;MTE{core}:1.06287674804;ZFP161:1.05017946383;SMAD1..7,9:1.04802874941;ESR1:1.02571689319;ESRRA:1.02323078333;PRRX1,2:1.00932917444;NANOG{mouse}:0.964746846694;IKZF1:0.949065922805;NFATC1..3:0.904759588003;PRDM1:0.889322582922;TGIF1:0.887131406638;NR5A1,2:0.861268158217;POU2F1..3:0.84530119505;FOX{I1,J2}:0.829874316567;ATF2:0.811702665688;SOX2:0.751512869225;ZIC1..3:0.746728625562;GCM1,2:0.744271627301;SOX{8,9,10}:0.74164394033;LMO2:0.735689873657;MYBL2:0.719404755182;BREu{core}:0.719045298012;MYOD1:0.684953680821;RFX1:0.683067413119;EBF1:0.673100957341;RXR{A,B,G}:0.668860364173;HIF1A:0.64763795616;GZF1:0.638363173382;FOXO1,3,4:0.608603174803;AR:0.599060217115;MYFfamily:0.595474434347;LEF1_TCF7_TCF7L1,2:0.541205227002;NFY{A,B,C}:0.506477898141;HAND1,2:0.478611514629;POU6F1:0.473398508538;NR6A1:0.465561566774;NKX2-1,4:0.443934062632;SRF:0.438329353978;ZNF143:0.426036727665;ZNF423:0.421117203935;DBP:0.414655871405;TLX2:0.407855973347;ZNF148:0.395025242813;JUN:0.350918980986;BPTF:0.350563009671;FOXD3:0.341769779254;IRF7:0.324172994361;PAX1,9:0.322079755805;MEF2{A,B,C,D}:0.304933928125;GATA6:0.290186710927;NHLH1,2:0.26254814669;ATF4:0.222073890893;ZNF238:0.216097480891;FOXN1:0.21336003464;TFAP4:0.204364263619;CUX2:0.193690849739;GLI1..3:0.162936494123;NRF1:0.154406590811;bHLH_family:0.14775571582;ALX1:0.144696254605;LHX3,4:0.14315390529;ETS1,2:0.125839819769;POU5F1:0.123921796496;PDX1:0.118834970535;FOXM1:0.102122723661;TBX4,5:0.0641346952731;KLF4:0.0297126064201;NANOG:0.0219152310076;REST:-0.0275130232703;ATF6:-0.0548523399846;STAT2,4,6:-0.056228271023;XBP1:-0.0909282671231;ZBTB6:-0.0966293939722;SPIB:-0.129625103499;PAX2:-0.132072678297;RFX2..5_RFXANK_RFXAP:-0.15632340881;CREB1:-0.167348483386;TP53:-0.167885786197;PITX1..3:-0.174875733056;MAFB:-0.175262499121;SPI1:-0.200243651615;ONECUT1,2:-0.20217687935;SOX17:-0.22282909647;RORA:-0.224737151071;EN1,2:-0.228016299981;FOXL1:-0.231064757803;CDC5L:-0.240630719932;TOPORS:-0.24171607191;IRF1,2:-0.273162245486;POU3F1..4:-0.283509667356;NFKB1_REL_RELA:-0.291715308023;ZNF384:-0.310529156865;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.313547905103;HLF:-0.332006614814;FOXP3:-0.33795116085;PPARG:-0.375146947099;HSF1,2:-0.389055312594;TAL1_TCF{3,4,12}:-0.396151863819;ELF1,2,4:-0.396201456865;HOX{A5,B5}:-0.397467683795;NFE2:-0.410638693698;ATF5_CREB3:-0.430415283375;E2F1..5:-0.439634398945;NFIX:-0.462754692922;NFE2L2:-0.474985931945;TFDP1:-0.489532234322;FOXP1:-0.495449826937;HMX1:-0.497724658408;IKZF2:-0.516128237684;FOXA2:-0.532438847285;STAT5{A,B}:-0.573176842354;HOXA9_MEIS1:-0.59363052723;BACH2:-0.616793388243;CEBPA,B_DDIT3:-0.626777705445;NR3C1:-0.640203654633;ELK1,4_GABP{A,B1}:-0.668536631327;FOS_FOS{B,L1}_JUN{B,D}:-0.671807462968;AHR_ARNT_ARNT2:-0.674277191977;FOSL2:-0.683283045415;OCT4_SOX2{dimer}:-0.712916757891;YY1:-0.757209915374;RUNX1..3:-0.791573506278;NFIL3:-0.802208294813;FOX{F1,F2,J1}:-0.80699317205;NR1H4:-0.816809216728;NKX6-1,2:-0.846442899695;PAX8:-0.883997080522;ARID5B:-0.960284178742;ALX4:-1.02688685397;HES1:-1.03483776648;DMAP1_NCOR{1,2}_SMARC:-1.05758966615;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.0693214433;POU1F1:-1.10338330477;UFEwm:-1.12490558516;PAX3,7:-1.14388153911;GATA4:-1.16361267248;NKX3-1:-1.23239850623;CRX:-1.24766983545;MYB:-1.25538092057;HMGA1,2:-1.30632012177;AIRE:-1.40450764953;HOX{A4,D4}:-1.47085897831;TEF:-1.52826349902;ZBTB16:-1.9044410152;PAX4:-1.93886941399;EVI1:-1.98612799334;CDX1,2,4:-2.04130461455;NFE2L1:-2.14821155424;NKX2-2,8:-2.59260135559 | |top_motifs=HNF1A:5.10119208143;SP1:3.01633342208;HNF4A_NR2F1,2:2.77052937934;MAZ:2.74338171259;TFCP2:2.26006426565;NKX2-3_NKX2-5:2.2352527381;PATZ1:2.17745681963;ADNP_IRX_SIX_ZHX:2.11186646255;MED-1{core}:2.06347690795;MZF1:2.04041667879;XCPE1{core}:1.98876644077;HIC1:1.95876607594;TFAP2{A,C}:1.92969345467;EP300:1.89872591837;PBX1:1.83264890166;HOX{A6,A7,B6,B7}:1.81613252205;TBP:1.79235762797;PAX5:1.73501918144;FOX{D1,D2}:1.68051892138;GTF2I:1.64744895721;TFAP2B:1.6094418305;RREB1:1.60085402349;FOXQ1:1.58441098776;RXRA_VDR{dimer}:1.52888632725;HBP1_HMGB_SSRP1_UBTF:1.50650435666;SNAI1..3:1.48022078381;VSX1,2:1.46510922243;SOX5:1.41584294711;GFI1:1.38578160153;EGR1..3:1.34335846127;TLX1..3_NFIC{dimer}:1.28690185623;SREBF1,2:1.28570704777;GTF2A1,2:1.25095750689;TEAD1:1.21688465523;ZEB1:1.21134361916;RBPJ:1.21004580934;PAX6:1.20021417208;STAT1,3:1.18855868251;T:1.17584069808;MTF1:1.14707312041;NKX3-2:1.1256283234;SPZ1:1.08615536545;GFI1B:1.06537211922;MTE{core}:1.06287674804;ZFP161:1.05017946383;SMAD1..7,9:1.04802874941;ESR1:1.02571689319;ESRRA:1.02323078333;PRRX1,2:1.00932917444;NANOG{mouse}:0.964746846694;IKZF1:0.949065922805;NFATC1..3:0.904759588003;PRDM1:0.889322582922;TGIF1:0.887131406638;NR5A1,2:0.861268158217;POU2F1..3:0.84530119505;FOX{I1,J2}:0.829874316567;ATF2:0.811702665688;SOX2:0.751512869225;ZIC1..3:0.746728625562;GCM1,2:0.744271627301;SOX{8,9,10}:0.74164394033;LMO2:0.735689873657;MYBL2:0.719404755182;BREu{core}:0.719045298012;MYOD1:0.684953680821;RFX1:0.683067413119;EBF1:0.673100957341;RXR{A,B,G}:0.668860364173;HIF1A:0.64763795616;GZF1:0.638363173382;FOXO1,3,4:0.608603174803;AR:0.599060217115;MYFfamily:0.595474434347;LEF1_TCF7_TCF7L1,2:0.541205227002;NFY{A,B,C}:0.506477898141;HAND1,2:0.478611514629;POU6F1:0.473398508538;NR6A1:0.465561566774;NKX2-1,4:0.443934062632;SRF:0.438329353978;ZNF143:0.426036727665;ZNF423:0.421117203935;DBP:0.414655871405;TLX2:0.407855973347;ZNF148:0.395025242813;JUN:0.350918980986;BPTF:0.350563009671;FOXD3:0.341769779254;IRF7:0.324172994361;PAX1,9:0.322079755805;MEF2{A,B,C,D}:0.304933928125;GATA6:0.290186710927;NHLH1,2:0.26254814669;ATF4:0.222073890893;ZNF238:0.216097480891;FOXN1:0.21336003464;TFAP4:0.204364263619;CUX2:0.193690849739;GLI1..3:0.162936494123;NRF1:0.154406590811;bHLH_family:0.14775571582;ALX1:0.144696254605;LHX3,4:0.14315390529;ETS1,2:0.125839819769;POU5F1:0.123921796496;PDX1:0.118834970535;FOXM1:0.102122723661;TBX4,5:0.0641346952731;KLF4:0.0297126064201;NANOG:0.0219152310076;REST:-0.0275130232703;ATF6:-0.0548523399846;STAT2,4,6:-0.056228271023;XBP1:-0.0909282671231;ZBTB6:-0.0966293939722;SPIB:-0.129625103499;PAX2:-0.132072678297;RFX2..5_RFXANK_RFXAP:-0.15632340881;CREB1:-0.167348483386;TP53:-0.167885786197;PITX1..3:-0.174875733056;MAFB:-0.175262499121;SPI1:-0.200243651615;ONECUT1,2:-0.20217687935;SOX17:-0.22282909647;RORA:-0.224737151071;EN1,2:-0.228016299981;FOXL1:-0.231064757803;CDC5L:-0.240630719932;TOPORS:-0.24171607191;IRF1,2:-0.273162245486;POU3F1..4:-0.283509667356;NFKB1_REL_RELA:-0.291715308023;ZNF384:-0.310529156865;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.313547905103;HLF:-0.332006614814;FOXP3:-0.33795116085;PPARG:-0.375146947099;HSF1,2:-0.389055312594;TAL1_TCF{3,4,12}:-0.396151863819;ELF1,2,4:-0.396201456865;HOX{A5,B5}:-0.397467683795;NFE2:-0.410638693698;ATF5_CREB3:-0.430415283375;E2F1..5:-0.439634398945;NFIX:-0.462754692922;NFE2L2:-0.474985931945;TFDP1:-0.489532234322;FOXP1:-0.495449826937;HMX1:-0.497724658408;IKZF2:-0.516128237684;FOXA2:-0.532438847285;STAT5{A,B}:-0.573176842354;HOXA9_MEIS1:-0.59363052723;BACH2:-0.616793388243;CEBPA,B_DDIT3:-0.626777705445;NR3C1:-0.640203654633;ELK1,4_GABP{A,B1}:-0.668536631327;FOS_FOS{B,L1}_JUN{B,D}:-0.671807462968;AHR_ARNT_ARNT2:-0.674277191977;FOSL2:-0.683283045415;OCT4_SOX2{dimer}:-0.712916757891;YY1:-0.757209915374;RUNX1..3:-0.791573506278;NFIL3:-0.802208294813;FOX{F1,F2,J1}:-0.80699317205;NR1H4:-0.816809216728;NKX6-1,2:-0.846442899695;PAX8:-0.883997080522;ARID5B:-0.960284178742;ALX4:-1.02688685397;HES1:-1.03483776648;DMAP1_NCOR{1,2}_SMARC:-1.05758966615;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.0693214433;POU1F1:-1.10338330477;UFEwm:-1.12490558516;PAX3,7:-1.14388153911;GATA4:-1.16361267248;NKX3-1:-1.23239850623;CRX:-1.24766983545;MYB:-1.25538092057;HMGA1,2:-1.30632012177;AIRE:-1.40450764953;HOX{A4,D4}:-1.47085897831;TEF:-1.52826349902;ZBTB16:-1.9044410152;PAX4:-1.93886941399;EVI1:-1.98612799334;CDX1,2,4:-2.04130461455;NFE2L1:-2.14821155424;NKX2-2,8:-2.59260135559 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10045-101F9;search_select_hide=table117:FF:10045-101F9 | |||
}} | }} | ||
Latest revision as of 12:17, 3 June 2020
| Name: | kidney, fetal, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10652 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10652
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10652
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0087 |
| 10 | 10 | 0.0129 |
| 100 | 100 | 0.321 |
| 101 | 101 | 0.446 |
| 102 | 102 | 0.682 |
| 103 | 103 | 0.0606 |
| 104 | 104 | 0.747 |
| 105 | 105 | 0.738 |
| 106 | 106 | 0.212 |
| 107 | 107 | 0.624 |
| 108 | 108 | 0.517 |
| 109 | 109 | 0.0164 |
| 11 | 11 | 0.035 |
| 110 | 110 | 0.0835 |
| 111 | 111 | 7.41935e-4 |
| 112 | 112 | 0.147 |
| 113 | 113 | 0.583 |
| 114 | 114 | 3.6964e-4 |
| 115 | 115 | 0.706 |
| 116 | 116 | 0.303 |
| 117 | 117 | 0.00817 |
| 118 | 118 | 0.154 |
| 119 | 119 | 0.101 |
| 12 | 12 | 0.791 |
| 120 | 120 | 0.162 |
| 121 | 121 | 0.924 |
| 122 | 122 | 0.487 |
| 123 | 123 | 0.00673 |
| 124 | 124 | 0.637 |
| 125 | 125 | 0.00375 |
| 126 | 126 | 0.875 |
| 127 | 127 | 0.111 |
| 128 | 128 | 0.249 |
| 129 | 129 | 0.901 |
| 13 | 13 | 0.135 |
| 130 | 130 | 0.146 |
| 131 | 131 | 0.722 |
| 132 | 132 | 0.743 |
| 133 | 133 | 0.899 |
| 134 | 134 | 0.77 |
| 135 | 135 | 0.89 |
| 136 | 136 | 0.945 |
| 137 | 137 | 0.269 |
| 138 | 138 | 0.241 |
| 139 | 139 | 0.0218 |
| 14 | 14 | 0.887 |
| 140 | 140 | 0.181 |
| 141 | 141 | 0.0922 |
| 142 | 142 | 0.451 |
| 143 | 143 | 0.00181 |
| 144 | 144 | 0.495 |
| 145 | 145 | 0.485 |
| 146 | 146 | 0.612 |
| 147 | 147 | 0.874 |
| 148 | 148 | 0.00887 |
| 149 | 149 | 0.468 |
| 15 | 15 | 0.0514 |
| 150 | 150 | 0.404 |
| 151 | 151 | 0.438 |
| 152 | 152 | 0.945 |
| 153 | 153 | 0.95 |
| 154 | 154 | 0.378 |
| 155 | 155 | 0.28 |
| 156 | 156 | 0.769 |
| 157 | 157 | 0.734 |
| 158 | 158 | 0.435 |
| 159 | 159 | 0.369 |
| 16 | 16 | 0.137 |
| 160 | 160 | 0.365 |
| 161 | 161 | 0.283 |
| 162 | 162 | 0.691 |
| 163 | 163 | 0.773 |
| 164 | 164 | 0.0454 |
| 165 | 165 | 0.45 |
| 166 | 166 | 0.842 |
| 167 | 167 | 0.0142 |
| 168 | 168 | 0.93 |
| 169 | 169 | 0.0536 |
| 17 | 17 | 0.23 |
| 18 | 18 | 0.0245 |
| 19 | 19 | 0.697 |
| 2 | 2 | 0.603 |
| 20 | 20 | 0.362 |
| 21 | 21 | 0.159 |
| 22 | 22 | 0.707 |
| 23 | 23 | 0.585 |
| 24 | 24 | 0.73 |
| 25 | 25 | 0.323 |
| 26 | 26 | 0.0172 |
| 27 | 27 | 0.725 |
| 28 | 28 | 0.768 |
| 29 | 29 | 0.0173 |
| 3 | 3 | 0.0501 |
| 30 | 30 | 0.112 |
| 31 | 31 | 0.874 |
| 32 | 32 | 0.122 |
| 33 | 33 | 0.318 |
| 34 | 34 | 0.463 |
| 35 | 35 | 0.0968 |
| 36 | 36 | 0.00828 |
| 37 | 37 | 0.0532 |
| 38 | 38 | 0.539 |
| 39 | 39 | 0.834 |
| 4 | 4 | 0.702 |
| 40 | 40 | 0.258 |
| 41 | 41 | 0.185 |
| 42 | 42 | 0.13 |
| 43 | 43 | 0.115 |
| 44 | 44 | 0.245 |
| 45 | 45 | 0.515 |
| 46 | 46 | 0.0262 |
| 47 | 47 | 0.0567 |
| 48 | 48 | 0.136 |
| 49 | 49 | 0.0676 |
| 5 | 5 | 0.21 |
| 50 | 50 | 0.835 |
| 51 | 51 | 0.543 |
| 52 | 52 | 0.618 |
| 53 | 53 | 0.577 |
| 54 | 54 | 0.684 |
| 55 | 55 | 0.149 |
| 56 | 56 | 0.73 |
| 57 | 57 | 0.182 |
| 58 | 58 | 0.453 |
| 59 | 59 | 0.457 |
| 6 | 6 | 0.348 |
| 60 | 60 | 0.424 |
| 61 | 61 | 0.273 |
| 62 | 62 | 0.132 |
| 63 | 63 | 0.255 |
| 64 | 64 | 0.147 |
| 65 | 65 | 0.454 |
| 66 | 66 | 0.753 |
| 67 | 67 | 0.21 |
| 68 | 68 | 0.431 |
| 69 | 69 | 0.57 |
| 7 | 7 | 0.435 |
| 70 | 70 | 0.00851 |
| 71 | 71 | 0.0146 |
| 72 | 72 | 0.581 |
| 73 | 73 | 0.093 |
| 74 | 74 | 0.202 |
| 75 | 75 | 0.00683 |
| 76 | 76 | 0.0417 |
| 77 | 77 | 0.859 |
| 78 | 78 | 0.243 |
| 79 | 79 | 0.0895 |
| 8 | 8 | 0.0451 |
| 80 | 80 | 0.578 |
| 81 | 81 | 0.117 |
| 82 | 82 | 0.188 |
| 83 | 83 | 0.583 |
| 84 | 84 | 0.563 |
| 85 | 85 | 0.208 |
| 86 | 86 | 0.21 |
| 87 | 87 | 0.185 |
| 88 | 88 | 0.941 |
| 89 | 89 | 0.223 |
| 9 | 9 | 0.944 |
| 90 | 90 | 0.042 |
| 91 | 91 | 0.409 |
| 92 | 92 | 0.246 |
| 93 | 93 | 0.156 |
| 94 | 94 | 0.0208 |
| 95 | 95 | 0.0767 |
| 96 | 96 | 0.12 |
| 97 | 97 | 0.742 |
| 98 | 98 | 0.0962 |
| 99 | 99 | 0.559 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10652
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010045 human kidney - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010045 (human kidney - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
