FF:10054-101G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004793 | ||
|accession_numbers=CAGE;DRX008655;DRR009527;DRZ000952;DRZ002337 | |accession_numbers=CAGE;DRX008655;DRR009527;DRZ000952;DRZ002337;DRZ012302;DRZ013687 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000970,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0002104,UBERON:0004456 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000970,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0002104,UBERON:0004456 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:48325184..48325211,+!p1@CRX!2.93!858.05!CRX;;chr14:24553835..24553850,-!p1@NRL!2.85!706.64!NRL;;chr14:57277178..57277203,-!p1@OTX2!2.24!171.75!OTX2;;chr2:182545234..182545252,-!p1@NEUROD1!2.09!121.58!NEUROD1;;chr9:77112244..77112262,+!p1@RORB!2.07!129.26!RORB;;chr12:54779511..54779577,-!p5@ZNF385A!2.01!102.37!ZNF385A;;chr19:3772220..3772236,-!p1@RAX2!1.92!82.26!RAX2;;chr11:31839488..31839515,-!p3@PAX6!1.91!80.45!PAX6;;chr1:201979703..201979721,+!p2@ELF3!1.88!74.35!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.82!65.08!HOPX;;chr1:216896752..216896778,-!p1@ESRRG!1.81!63.27!ESRRG;;chr18:56940611..56940660,-!p1@RAX!1.79!61.24!RAX;;chr17:53342311..53342400,+!p1@HLF!1.78!67.34!HLF;;chr1:201979743..201979762,+!p1@ELF3!1.78!59.43!ELF3;;chr11:34642612..34642646,+!p1@EHF!1.77!58.08!EHF;;chr14:76842457..76842494,+!p1@ESRRB!1.74!53.33!ESRRB;;chr7:100065686..100065701,-!p2@TSC22D4!1.72!51.75!TSC22D4;;chr1:2461692..2461710,-!p1@HES5!1.67!45.87!HES5;;chr15:72102881..72102925,+!p1@NR2E3!1.66!44.97!NR2E3;;chr20:62680984..62680999,-!p1@SOX18!1.64!56.04!SOX18;;chr15:42749722..42749739,-!p2@ZFP106!1.59!67.12!ZFP106;;chr12:26277817..26277863,-!p2@BHLHE41!1.57!48.13!BHLHE41;;chr13:72441315..72441454,-!p1@DACH1!1.56!68.70!DACH1;;chr4:81118647..81118666,+!p1@PRDM8!1.56!46.10!PRDM8;;chr1:214161272..214161322,+!p1@PROX1!1.54!47.00!PROX1;;chr4:8873545..8873583,-!p1@HMX1!1.53!32.77!HMX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.52!32.32!ZBED1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.50!30.73!PEG3;;chr19:37837218..37837237,+!p5@HKR1!1.49!29.83!HKR1;;chr11:31825588..31825613,-!p8@PAX6!1.47!28.70!PAX6;;chr22:38380543..38380569,-!p1@SOX10!1.47!28.47!SOX10;;chr3:181429704..181429722,+!p1@SOX2!1.46!28.02!SOX2;;chr1:40105299..40105326,-!p1@HEYL!1.45!27.12!HEYL;;chr19:46801639..46801699,+!p1@HIF3A!1.44!26.44!HIF3A;;chr12:55413751..55413765,+!p1@NEUROD4!1.43!25.76!NEUROD4;;chr3:52002194..52002250,-!p5@PCBP4!1.42!25.54!PCBP4;;chr9:126774018..126774055,+!p1@LHX2!1.42!25.31!LHX2;;chr1:170632285..170632309,+!p1@PRRX1!1.41!27.57!PRRX1;;chr3:52001448..52001478,-!p2@PCBP4!1.39!311.85!PCBP4;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!35.93!ZNF385A;;chr2:180726040..180726052,-!p2@ZNF385B!1.39!23.73!ZNF385B;;chr2:45168834..45168847,+!p2@SIX3!1.39!23.28!SIX3;;chr14:74706150..74706155,+!p1@VSX2!1.39!23.28!VSX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.38!23.05!TFAP2B;;chr17:38256822..38256851,-!p1@NR1D1!1.37!168.81!NR1D1;;chr3:69985734..69985749,+!p2@MITF!1.37!22.37!MITF;;chr2:45168875..45168916,+!p1@SIX3!1.36!21.69!SIX3;;chr14:24551143..24551178,-!p6@NRL!1.36!21.69!NRL;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.67!TFAP2A;;chr11:31832862..31832884,-!p2@PAX6!1.33!20.34!PAX6;;chr20:25062773..25062779,-!p3@VSX1!1.33!20.34!VSX1;;chr1:165414325..165414369,-!p1@RXRG!1.32!20.11!RXRG;;chr4:111544219..111544240,-!p1@PITX2!1.32!20.11!PITX2;;chr11:129245526..129245553,+!p1@BARX2!1.32!20.11!BARX2;;chr5:50679228..50679288,+!p1@ISL1!1.32!19.89!ISL1;;chr12:26277956..26277980,-!p1@BHLHE41!1.31!68.25!BHLHE41;;chr17:38256799..38256815,-!p3@NR1D1!1.31!34.58!NR1D1;;chr19:3772263..3772274,-!p2@RAX2!1.31!19.43!RAX2;;chr5:134369879..134369898,-!p2@PITX1!1.30!18.98!PITX1;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.53!PAX6;;chr17:7492684..7492778,-!p2@SOX15!1.27!37.06!SOX15;;chrX:591524..591527,+!p1@SHOX!1.26!17.17!SHOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.24!26.44!FOXQ1;;chr11:113930425..113930471,+!p1@ZBTB16!1.24!23.50!ZBTB16;;chr3:193853927..193853944,+!p1@HES1!1.23!509.81!HES1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.55!EBF1;;chr6:108487289..108487302,+!p1@NR2E1!1.23!16.04!NR2E1;;chr2:63277948..63277974,+!p1@OTX1!1.23!15.82!OTX1;;chr4:111558135..111558198,-!p2@PITX2!1.23!15.82!PITX2;;chr11:8040739..8040815,+!p4@TUB!1.23!15.82!TUB;;chr14:60975883..60975911,+!p1@SIX6!1.23!15.82!SIX6;;chr12:81101404..81101421,+!p1@MYF6!1.21!15.37!MYF6;;chr9:77230443..77230455,+!p6@RORB!1.21!15.37!RORB;;chr2:45169193..45169219,+!p3@SIX3!1.21!15.37!SIX3;;chr21:47063625..47063658,+!p1@PCBP3!1.19!63.05!PCBP3;;chr12:52437488..52437507,+!p2@NR4A1!1.19!14.46!NR4A1;;chr17:80797886..80797906,-!p1@ZNF750!1.19!14.46!ZNF750;;chr18:56940663..56940691,-!p2@RAX!1.19!14.46!RAX;;chr16:79634624..79634642,-!p1@MAF!1.18!55.37!MAF;;chr7:44143925..44143970,+!p1@AEBP1!1.17!301.01!AEBP1;;chr6:1389789..1389821,+!p1@FOXF2!1.17!18.76!FOXF2;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.76!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!1.16!168.58!NR4A1;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.10!DPF3;;chr9:126773880..126773895,+!p2@LHX2!1.16!13.56!LHX2;;chr12:53848759..53848774,+!p30@PCBP2!1.15!13.11!PCBP2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.15!13.11!SMARCE1;;chr20:30433396..30433414,-!p1@FOXS1!1.14!12.88!FOXS1;;chr21:39870339..39870443,-!p1@ERG!1.14!12.88!ERG;;chr3:25470156..25470227,+!p2@RARB!1.14!12.88!RARB;;chr3:51994798..51994819,-!p17@PCBP4!1.14!12.88!PCBP4;;chr8:55370487..55370503,+!p1@SOX17!1.14!12.65!SOX17;;chr2:145277882..145277967,-!p3@ZEB2!1.13!21.47!ZEB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.13!18.30!CSRNP3;;chr17:38465441..38465481,+!p6@RARA!1.13!15.37!RARA;;chr8:40755333..40755352,-!p1@ZMAT4!1.13!12.43!ZMAT4;;chr7:19157248..19157268,-!p1@TWIST1!1.11!32.77!TWIST1;;chr6:10415276..10415341,-!p2@TFAP2A!1.11!14.46!TFAP2A;;chr3:147127142..147127168,+!p1@ZIC1!1.11!11.98!ZIC1;;chr1:203055129..203055147,-!p1@MYOG!1.11!11.98!MYOG;;chr8:10588010..10588030,-!p1@SOX7!1.11!11.75!SOX7;;chr16:79634595..79634620,-!p2@MAF!1.10!21.02!MAF;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.72!BHLHE41;;chr10:28034739..28034756,-!p1@MKX!1.10!11.53!MKX;;chr17:59477233..59477263,+!p1@TBX2!1.09!35.03!TBX2;;chr1:10754477..10754517,-!p1@CASZ1!1.09!18.76!CASZ1;;chr11:31832807..31832823,-!p4@PAX6!1.09!11.30!PAX6;;chr11:31839453..31839462,-!p9@PAX6!1.09!11.30!PAX6;;chr14:60975858..60975869,+!p2@SIX6!1.09!11.30!SIX6;;chr6:10415484..10415508,-!p3@TFAP2A!1.08!11.07!TFAP2A;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.20!TCF4;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.85!HIF3A;;chr1:10856665..10856683,-!p4@CASZ1!1.07!10.85!CASZ1;;chr7:44143978..44143989,+!p2@AEBP1!1.06!19.21!AEBP1;;chr6:1610293..1610310,+!p1@FOXC1!1.06!17.85!FOXC1;;chr8:80679993..80680011,-!p1@HEY1!1.05!14.91!HEY1;;chr1:197886461..197886558,+!p1@LHX9!1.05!10.17!LHX9;;chr20:55204351..55204377,+!p1@TFAP2C!1.04!12.65!TFAP2C;;chr1:10856639..10856662,-!p2@CASZ1!1.04!9.94!CASZ1;;chr1:10856694..10856715,-!p3@CASZ1!1.04!9.94!CASZ1;;chr11:31832581..31832601,-!p7@PAX6!1.04!9.94!PAX6;;chr15:53082521..53082549,-!p1@ONECUT1!1.04!9.94!ONECUT1;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.89!OSR1;;chr15:61521417..61521460,-!p2@RORA!1.03!21.92!RORA;;chr2:71127699..71127744,+!p1@VAX2!1.03!20.11!VAX2;;chr2:180726058..180726098,-!p3@ZNF385B!1.03!9.72!ZNF385B;;chr4:8873531..8873542,-!p4@HMX1!1.03!9.72!HMX1;;chr5:158527104..158527135,-!p4@EBF1!1.03!9.72!EBF1;;chr1:216896780..216896800,-!p2@ESRRG!1.03!9.72!ESRRG;;chr11:129245736..129245758,+!p2@BARX2!1.03!9.72!BARX2;;chr5:92918919..92918942,+!p1@NR2F1!1.02!42.94!NR2F1;;chr7:113726357..113726443,+!p1@FOXP2!1.02!16.50!FOXP2;;chr14:57272369..57272391,-!p2@OTX2!1.02!9.49!OTX2;;chr19:49140609..49140643,-!p1@DBP!1.01!53.33!DBP;;chr9:114287433..114287513,+!p1@ZNF483!1.01!24.41!ZNF483;;chr3:114819124..114819200,-!p3@ZBTB20!1.01!21.69!ZBTB20;;chr13:100634031..100634045,+!p1@ZIC2!1.01!9.27!ZIC2;;chr14:57277098..57277116,-!p3@OTX2!1.01!9.27!OTX2;;chr12:54785054..54785072,-!p4@ZNF385A!1.00!10.17!ZNF385A;;chr11:125034640..125034655,+!p1@PKNOX2!1.00!9.04!PKNOX2;;chr5:2751762..2751784,-!p1@IRX2!1.00!9.04!IRX2;;chr16:1031762..1031781,+!p1@SOX8!1.00!9.04!SOX8;;chr17:7493405..7493419,-!p1@SOX15!1.00!9.04!SOX15;;chr22:41763452..41763466,+!p2@TEF!1.00!9.04!TEF;;chr6:19837592..19837621,+!p1@ID4!0.99!55.37!ID4;;chr15:57511609..57511651,+!p2@TCF12!0.99!14.91!TCF12;;chr8:99956662..99956684,+!p1@OSR2!0.99!13.56!OSR2;;chr3:126076242..126076257,-!p1@KLF15!0.99!11.07!KLF15;;chr14:75745523..75745537,+!p1@FOS!0.98!1053.30!FOS;;chr13:73633131..73633149,+!p1@KLF5!0.98!94.69!KLF5;;chr4:87928413..87928433,+!p3@AFF1!0.98!54.69!AFF1;;chr2:45236540..45236577,-!p1@SIX2!0.98!8.59!SIX2;;chr2:66662510..66662521,+!p6@MEIS1!0.98!8.59!MEIS1;;chr3:189507432..189507459,+!p1@TP63!0.98!8.59!TP63;;chr8:53162037..53162058,-!p5@ST18!0.98!8.59!ST18;;chr8:48650715..48650735,-!p1@CEBPD!0.97!1098.72!CEBPD;;chr5:124084493..124084524,-!p2@ZNF608!0.97!19.21!ZNF608;;chr17:38465413..38465438,+!p5@RARA!0.97!13.33!RARA;;chr3:147127177..147127194,+!p2@ZIC1!0.97!8.36!ZIC1;;chr3:25469724..25469773,+!p1@RARB!0.96!11.98!RARB;;chr5:134871645..134871660,-!p1@NEUROG1!0.96!8.14!NEUROG1;;chr13:72441074..72441172,-!p2@DACH1!0.96!8.14!DACH1;;chr10:131762504..131762555,-!p1@EBF3!0.95!7.91!EBF3;;chr15:60884706..60884743,-!p1@RORA!0.94!40.90!RORA;;chr3:52001426..52001447,-!p3@PCBP4!0.94!22.60!PCBP4;;chr14:75746722..75746777,+!p2@FOS!0.94!9.94!FOS;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.78!TBX18;;chr1:41827095..41827155,+!p1@FOXO6!0.93!10.40!FOXO6;;chr6:50786547..50786564,+!p3@TFAP2B!0.93!7.46!TFAP2B;;chr2:5832508..5832524,+!p1@SOX11!0.93!7.46!SOX11;;chr3:181429741..181429767,+!p2@SOX2!0.93!7.46!SOX2;;chr3:21792682..21792720,-!p1@ZNF385D!0.93!7.46!ZNF385D;;chr15:72102951..72102966,+!p2@NR2E3!0.93!7.46!NR2E3;;chr14:21994337..21994442,-!p1@SALL2!0.92!21.02!SALL2;;chr11:8102846..8102892,+!p1@TUB!0.92!10.40!TUB;;chr11:44331576..44331650,-!p1@ALX4!0.92!7.23!ALX4;;chr6:108487220..108487236,+!p2@NR2E1!0.92!7.23!NR2E1;;chr6:34524093..34524135,-!p1@SPDEF!0.92!7.23!SPDEF;;chrX:106960285..106960299,-!p1@TSC22D3!0.91!201.80!TSC22D3;;chr18:22932080..22932170,-!p1@ZNF521!0.91!31.86!ZNF521;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.66!HIC1;;chr19:38085768..38085821,+!p1@ZNF540!0.91!10.85!ZNF540;;chr17:70117153..70117174,+!p1@SOX9!0.90!75.70!SOX9;;chr6:108881012..108881034,+!p3@FOXO3!0.90!25.76!FOXO3;;chr3:126076264..126076305,-!p2@KLF15!0.90!9.94!KLF15;;chr12:125003087..125003141,-!p4@NCOR2!0.90!9.04!NCOR2;;chr7:44143997..44144008,+!p3@AEBP1!0.90!9.04!AEBP1;;chr2:45169143..45169167,+!p5@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| |expression_enrichment_score=chr19:48325184..48325211,+!p1@CRX!2.93!858.05!CRX;;chr14:24553835..24553850,-!p1@NRL!2.85!706.64!NRL;;chr14:57277178..57277203,-!p1@OTX2!2.24!171.75!OTX2;;chr2:182545234..182545252,-!p1@NEUROD1!2.09!121.58!NEUROD1;;chr9:77112244..77112262,+!p1@RORB!2.07!129.26!RORB;;chr12:54779511..54779577,-!p5@ZNF385A!2.01!102.37!ZNF385A;;chr19:3772220..3772236,-!p1@RAX2!1.92!82.26!RAX2;;chr11:31839488..31839515,-!p3@PAX6!1.91!80.45!PAX6;;chr1:201979703..201979721,+!p2@ELF3!1.88!74.35!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.82!65.08!HOPX;;chr1:216896752..216896778,-!p1@ESRRG!1.81!63.27!ESRRG;;chr18:56940611..56940660,-!p1@RAX!1.79!61.24!RAX;;chr17:53342311..53342400,+!p1@HLF!1.78!67.34!HLF;;chr1:201979743..201979762,+!p1@ELF3!1.78!59.43!ELF3;;chr11:34642612..34642646,+!p1@EHF!1.77!58.08!EHF;;chr14:76842457..76842494,+!p1@ESRRB!1.74!53.33!ESRRB;;chr7:100065686..100065701,-!p2@TSC22D4!1.72!51.75!TSC22D4;;chr1:2461692..2461710,-!p1@HES5!1.67!45.87!HES5;;chr15:72102881..72102925,+!p1@NR2E3!1.66!44.97!NR2E3;;chr20:62680984..62680999,-!p1@SOX18!1.64!56.04!SOX18;;chr15:42749722..42749739,-!p2@ZFP106!1.59!67.12!ZFP106;;chr12:26277817..26277863,-!p2@BHLHE41!1.57!48.13!BHLHE41;;chr13:72441315..72441454,-!p1@DACH1!1.56!68.70!DACH1;;chr4:81118647..81118666,+!p1@PRDM8!1.56!46.10!PRDM8;;chr1:214161272..214161322,+!p1@PROX1!1.54!47.00!PROX1;;chr4:8873545..8873583,-!p1@HMX1!1.53!32.77!HMX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.52!32.32!ZBED1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.50!30.73!PEG3;;chr19:37837218..37837237,+!p5@HKR1!1.49!29.83!HKR1;;chr11:31825588..31825613,-!p8@PAX6!1.47!28.70!PAX6;;chr22:38380543..38380569,-!p1@SOX10!1.47!28.47!SOX10;;chr3:181429704..181429722,+!p1@SOX2!1.46!28.02!SOX2;;chr1:40105299..40105326,-!p1@HEYL!1.45!27.12!HEYL;;chr19:46801639..46801699,+!p1@HIF3A!1.44!26.44!HIF3A;;chr12:55413751..55413765,+!p1@NEUROD4!1.43!25.76!NEUROD4;;chr3:52002194..52002250,-!p5@PCBP4!1.42!25.54!PCBP4;;chr9:126774018..126774055,+!p1@LHX2!1.42!25.31!LHX2;;chr1:170632285..170632309,+!p1@PRRX1!1.41!27.57!PRRX1;;chr3:52001448..52001478,-!p2@PCBP4!1.39!311.85!PCBP4;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!35.93!ZNF385A;;chr2:180726040..180726052,-!p2@ZNF385B!1.39!23.73!ZNF385B;;chr2:45168834..45168847,+!p2@SIX3!1.39!23.28!SIX3;;chr14:74706150..74706155,+!p1@VSX2!1.39!23.28!VSX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.38!23.05!TFAP2B;;chr17:38256822..38256851,-!p1@NR1D1!1.37!168.81!NR1D1;;chr3:69985734..69985749,+!p2@MITF!1.37!22.37!MITF;;chr2:45168875..45168916,+!p1@SIX3!1.36!21.69!SIX3;;chr14:24551143..24551178,-!p6@NRL!1.36!21.69!NRL;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.67!TFAP2A;;chr11:31832862..31832884,-!p2@PAX6!1.33!20.34!PAX6;;chr20:25062773..25062779,-!p3@VSX1!1.33!20.34!VSX1;;chr1:165414325..165414369,-!p1@RXRG!1.32!20.11!RXRG;;chr4:111544219..111544240,-!p1@PITX2!1.32!20.11!PITX2;;chr11:129245526..129245553,+!p1@BARX2!1.32!20.11!BARX2;;chr5:50679228..50679288,+!p1@ISL1!1.32!19.89!ISL1;;chr12:26277956..26277980,-!p1@BHLHE41!1.31!68.25!BHLHE41;;chr17:38256799..38256815,-!p3@NR1D1!1.31!34.58!NR1D1;;chr19:3772263..3772274,-!p2@RAX2!1.31!19.43!RAX2;;chr5:134369879..134369898,-!p2@PITX1!1.30!18.98!PITX1;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.53!PAX6;;chr17:7492684..7492778,-!p2@SOX15!1.27!37.06!SOX15;;chrX:591524..591527,+!p1@SHOX!1.26!17.17!SHOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.24!26.44!FOXQ1;;chr11:113930425..113930471,+!p1@ZBTB16!1.24!23.50!ZBTB16;;chr3:193853927..193853944,+!p1@HES1!1.23!509.81!HES1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.55!EBF1;;chr6:108487289..108487302,+!p1@NR2E1!1.23!16.04!NR2E1;;chr2:63277948..63277974,+!p1@OTX1!1.23!15.82!OTX1;;chr4:111558135..111558198,-!p2@PITX2!1.23!15.82!PITX2;;chr11:8040739..8040815,+!p4@TUB!1.23!15.82!TUB;;chr14:60975883..60975911,+!p1@SIX6!1.23!15.82!SIX6;;chr12:81101404..81101421,+!p1@MYF6!1.21!15.37!MYF6;;chr9:77230443..77230455,+!p6@RORB!1.21!15.37!RORB;;chr2:45169193..45169219,+!p3@SIX3!1.21!15.37!SIX3;;chr21:47063625..47063658,+!p1@PCBP3!1.19!63.05!PCBP3;;chr12:52437488..52437507,+!p2@NR4A1!1.19!14.46!NR4A1;;chr17:80797886..80797906,-!p1@ZNF750!1.19!14.46!ZNF750;;chr18:56940663..56940691,-!p2@RAX!1.19!14.46!RAX;;chr16:79634624..79634642,-!p1@MAF!1.18!55.37!MAF;;chr7:44143925..44143970,+!p1@AEBP1!1.17!301.01!AEBP1;;chr6:1389789..1389821,+!p1@FOXF2!1.17!18.76!FOXF2;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.76!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!1.16!168.58!NR4A1;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.10!DPF3;;chr9:126773880..126773895,+!p2@LHX2!1.16!13.56!LHX2;;chr12:53848759..53848774,+!p30@PCBP2!1.15!13.11!PCBP2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.15!13.11!SMARCE1;;chr20:30433396..30433414,-!p1@FOXS1!1.14!12.88!FOXS1;;chr21:39870339..39870443,-!p1@ERG!1.14!12.88!ERG;;chr3:25470156..25470227,+!p2@RARB!1.14!12.88!RARB;;chr3:51994798..51994819,-!p17@PCBP4!1.14!12.88!PCBP4;;chr8:55370487..55370503,+!p1@SOX17!1.14!12.65!SOX17;;chr2:145277882..145277967,-!p3@ZEB2!1.13!21.47!ZEB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.13!18.30!CSRNP3;;chr17:38465441..38465481,+!p6@RARA!1.13!15.37!RARA;;chr8:40755333..40755352,-!p1@ZMAT4!1.13!12.43!ZMAT4;;chr7:19157248..19157268,-!p1@TWIST1!1.11!32.77!TWIST1;;chr6:10415276..10415341,-!p2@TFAP2A!1.11!14.46!TFAP2A;;chr3:147127142..147127168,+!p1@ZIC1!1.11!11.98!ZIC1;;chr1:203055129..203055147,-!p1@MYOG!1.11!11.98!MYOG;;chr8:10588010..10588030,-!p1@SOX7!1.11!11.75!SOX7;;chr16:79634595..79634620,-!p2@MAF!1.10!21.02!MAF;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.72!BHLHE41;;chr10:28034739..28034756,-!p1@MKX!1.10!11.53!MKX;;chr17:59477233..59477263,+!p1@TBX2!1.09!35.03!TBX2;;chr1:10754477..10754517,-!p1@CASZ1!1.09!18.76!CASZ1;;chr11:31832807..31832823,-!p4@PAX6!1.09!11.30!PAX6;;chr11:31839453..31839462,-!p9@PAX6!1.09!11.30!PAX6;;chr14:60975858..60975869,+!p2@SIX6!1.09!11.30!SIX6;;chr6:10415484..10415508,-!p3@TFAP2A!1.08!11.07!TFAP2A;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.20!TCF4;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.85!HIF3A;;chr1:10856665..10856683,-!p4@CASZ1!1.07!10.85!CASZ1;;chr7:44143978..44143989,+!p2@AEBP1!1.06!19.21!AEBP1;;chr6:1610293..1610310,+!p1@FOXC1!1.06!17.85!FOXC1;;chr8:80679993..80680011,-!p1@HEY1!1.05!14.91!HEY1;;chr1:197886461..197886558,+!p1@LHX9!1.05!10.17!LHX9;;chr20:55204351..55204377,+!p1@TFAP2C!1.04!12.65!TFAP2C;;chr1:10856639..10856662,-!p2@CASZ1!1.04!9.94!CASZ1;;chr1:10856694..10856715,-!p3@CASZ1!1.04!9.94!CASZ1;;chr11:31832581..31832601,-!p7@PAX6!1.04!9.94!PAX6;;chr15:53082521..53082549,-!p1@ONECUT1!1.04!9.94!ONECUT1;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.89!OSR1;;chr15:61521417..61521460,-!p2@RORA!1.03!21.92!RORA;;chr2:71127699..71127744,+!p1@VAX2!1.03!20.11!VAX2;;chr2:180726058..180726098,-!p3@ZNF385B!1.03!9.72!ZNF385B;;chr4:8873531..8873542,-!p4@HMX1!1.03!9.72!HMX1;;chr5:158527104..158527135,-!p4@EBF1!1.03!9.72!EBF1;;chr1:216896780..216896800,-!p2@ESRRG!1.03!9.72!ESRRG;;chr11:129245736..129245758,+!p2@BARX2!1.03!9.72!BARX2;;chr5:92918919..92918942,+!p1@NR2F1!1.02!42.94!NR2F1;;chr7:113726357..113726443,+!p1@FOXP2!1.02!16.50!FOXP2;;chr14:57272369..57272391,-!p2@OTX2!1.02!9.49!OTX2;;chr19:49140609..49140643,-!p1@DBP!1.01!53.33!DBP;;chr9:114287433..114287513,+!p1@ZNF483!1.01!24.41!ZNF483;;chr3:114819124..114819200,-!p3@ZBTB20!1.01!21.69!ZBTB20;;chr13:100634031..100634045,+!p1@ZIC2!1.01!9.27!ZIC2;;chr14:57277098..57277116,-!p3@OTX2!1.01!9.27!OTX2;;chr12:54785054..54785072,-!p4@ZNF385A!1.00!10.17!ZNF385A;;chr11:125034640..125034655,+!p1@PKNOX2!1.00!9.04!PKNOX2;;chr5:2751762..2751784,-!p1@IRX2!1.00!9.04!IRX2;;chr16:1031762..1031781,+!p1@SOX8!1.00!9.04!SOX8;;chr17:7493405..7493419,-!p1@SOX15!1.00!9.04!SOX15;;chr22:41763452..41763466,+!p2@TEF!1.00!9.04!TEF;;chr6:19837592..19837621,+!p1@ID4!0.99!55.37!ID4;;chr15:57511609..57511651,+!p2@TCF12!0.99!14.91!TCF12;;chr8:99956662..99956684,+!p1@OSR2!0.99!13.56!OSR2;;chr3:126076242..126076257,-!p1@KLF15!0.99!11.07!KLF15;;chr14:75745523..75745537,+!p1@FOS!0.98!1053.30!FOS;;chr13:73633131..73633149,+!p1@KLF5!0.98!94.69!KLF5;;chr4:87928413..87928433,+!p3@AFF1!0.98!54.69!AFF1;;chr2:45236540..45236577,-!p1@SIX2!0.98!8.59!SIX2;;chr2:66662510..66662521,+!p6@MEIS1!0.98!8.59!MEIS1;;chr3:189507432..189507459,+!p1@TP63!0.98!8.59!TP63;;chr8:53162037..53162058,-!p5@ST18!0.98!8.59!ST18;;chr8:48650715..48650735,-!p1@CEBPD!0.97!1098.72!CEBPD;;chr5:124084493..124084524,-!p2@ZNF608!0.97!19.21!ZNF608;;chr17:38465413..38465438,+!p5@RARA!0.97!13.33!RARA;;chr3:147127177..147127194,+!p2@ZIC1!0.97!8.36!ZIC1;;chr3:25469724..25469773,+!p1@RARB!0.96!11.98!RARB;;chr5:134871645..134871660,-!p1@NEUROG1!0.96!8.14!NEUROG1;;chr13:72441074..72441172,-!p2@DACH1!0.96!8.14!DACH1;;chr10:131762504..131762555,-!p1@EBF3!0.95!7.91!EBF3;;chr15:60884706..60884743,-!p1@RORA!0.94!40.90!RORA;;chr3:52001426..52001447,-!p3@PCBP4!0.94!22.60!PCBP4;;chr14:75746722..75746777,+!p2@FOS!0.94!9.94!FOS;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.78!TBX18;;chr1:41827095..41827155,+!p1@FOXO6!0.93!10.40!FOXO6;;chr6:50786547..50786564,+!p3@TFAP2B!0.93!7.46!TFAP2B;;chr2:5832508..5832524,+!p1@SOX11!0.93!7.46!SOX11;;chr3:181429741..181429767,+!p2@SOX2!0.93!7.46!SOX2;;chr3:21792682..21792720,-!p1@ZNF385D!0.93!7.46!ZNF385D;;chr15:72102951..72102966,+!p2@NR2E3!0.93!7.46!NR2E3;;chr14:21994337..21994442,-!p1@SALL2!0.92!21.02!SALL2;;chr11:8102846..8102892,+!p1@TUB!0.92!10.40!TUB;;chr11:44331576..44331650,-!p1@ALX4!0.92!7.23!ALX4;;chr6:108487220..108487236,+!p2@NR2E1!0.92!7.23!NR2E1;;chr6:34524093..34524135,-!p1@SPDEF!0.92!7.23!SPDEF;;chrX:106960285..106960299,-!p1@TSC22D3!0.91!201.80!TSC22D3;;chr18:22932080..22932170,-!p1@ZNF521!0.91!31.86!ZNF521;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.66!HIC1;;chr19:38085768..38085821,+!p1@ZNF540!0.91!10.85!ZNF540;;chr17:70117153..70117174,+!p1@SOX9!0.90!75.70!SOX9;;chr6:108881012..108881034,+!p3@FOXO3!0.90!25.76!FOXO3;;chr3:126076264..126076305,-!p2@KLF15!0.90!9.94!KLF15;;chr12:125003087..125003141,-!p4@NCOR2!0.90!9.04!NCOR2;;chr7:44143997..44144008,+!p3@AEBP1!0.90!9.04!AEBP1;;chr2:45169143..45169167,+!p5@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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 39: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10054-101G9 | |id=FF:10054-101G9 | ||
|is_a=EFO:0002091;;FF:0010054 | |is_a=EFO:0002091;;FF:0010054 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11762 | |library_id=CNhs11762 | ||
|library_id_phase_based=2:CNhs11762 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10054 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10054 | |||
|name=eye, fetal, donor1 | |name=eye, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 48: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11762,LSID820,release009,COMPLETED | |profile_hcage=CNhs11762,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 87: | Line 100: | ||
|top_motifs=CRX:7.62613342925;HOX{A6,A7,B6,B7}:5.27025194373;VSX1,2:5.07996333024;TAL1_TCF{3,4,12}:3.62849418609;TBP:3.32087561284;RORA:3.27666607144;PRDM1:2.73525583991;NKX3-2:2.69232004004;PATZ1:2.6364352355;NANOG:2.61649213078;MEF2{A,B,C,D}:2.45360715249;KLF4:2.42370911315;MAZ:2.42149673767;ZIC1..3:2.38802786466;SPZ1:2.31759876136;PAX5:2.27858481954;ESR1:2.25927432972;GATA4:2.2477558949;CDC5L:2.22485369737;GCM1,2:2.19868975446;GTF2I:2.11925041794;REST:2.08924363766;SMAD1..7,9:2.07941168125;GTF2A1,2:2.0384013603;HAND1,2:2.03030667052;HIC1:2.01956061522;MZF1:2.01521827397;GFI1B:1.98807587229;MED-1{core}:1.98609337239;MYFfamily:1.97472618089;MTF1:1.93001529054;TFAP4:1.83399416165;MYOD1:1.81975597979;FOXM1:1.80883586254;EP300:1.79241396365;PAX6:1.78292907653;NR5A1,2:1.77223480791;LMO2:1.74867491789;ADNP_IRX_SIX_ZHX:1.72893449036;MTE{core}:1.72101018039;ZNF423:1.7076947766;NFIL3:1.68230744358;POU6F1:1.63793866756;NKX2-1,4:1.63694091789;ESRRA:1.63206899859;ATF2:1.61691088194;PAX1,9:1.61388292195;NHLH1,2:1.60949296912;SP1:1.60216704166;HSF1,2:1.58756429576;TLX1..3_NFIC{dimer}:1.56912226509;RREB1:1.53093813782;IKZF1:1.51159984521;TFCP2:1.50628058923;EGR1..3:1.50188339883;TGIF1:1.48922239864;TFAP2{A,C}:1.4841273149;ZNF384:1.47077049015;SOX5:1.40576926173;FOXL1:1.3956767046;POU3F1..4:1.35262541726;XCPE1{core}:1.31941896036;TFAP2B:1.31320162426;SOX2:1.30575477551;RBPJ:1.30509115768;ZFP161:1.29344574322;NR1H4:1.28960020693;GLI1..3:1.28204000236;NR6A1:1.26674094576;DBP:1.24408555791;NR3C1:1.2042133244;BREu{core}:1.20208659926;MYBL2:1.19425930969;MAFB:1.18864049832;NFE2L1:1.18786745454;ALX4:1.18753863024;AIRE:1.18694530789;ALX1:1.13846960381;XBP1:1.10596308796;ZBTB6:1.06068644085;TEF:1.00897402326;UFEwm:0.993710098917;GFI1:0.989038695681;NKX2-3_NKX2-5:0.98437404146;AHR_ARNT_ARNT2:0.983768147308;ZNF238:0.973573217994;SNAI1..3:0.961994457301;TBX4,5:0.958625620656;POU5F1:0.943490904206;PRRX1,2:0.935196101677;JUN:0.918200627399;FOXA2:0.913485017892;ARID5B:0.902762463799;CUX2:0.899168370392;RXRA_VDR{dimer}:0.860811692224;FOX{I1,J2}:0.832724230817;HOX{A4,D4}:0.821715479507;SOX17:0.817798630774;SRF:0.816269004446;T:0.808086542862;TOPORS:0.796490934435;SOX{8,9,10}:0.782998794744;ZEB1:0.773985361031;NFATC1..3:0.747102982776;BPTF:0.74545764679;TLX2:0.743284102948;HMX1:0.741189557623;HIF1A:0.737328757018;PAX3,7:0.704177532826;RXR{A,B,G}:0.671314734495;RFX1:0.661955736992;HMGA1,2:0.64147911028;STAT2,4,6:0.585726211642;EVI1:0.583783316666;EBF1:0.561879802162;IKZF2:0.548950783993;TEAD1:0.526740976829;NANOG{mouse}:0.517882687592;RFX2..5_RFXANK_RFXAP:0.513572084348;NKX3-1:0.490220214761;FOXP3:0.487011192683;FOX{D1,D2}:0.472328731065;FOXD3:0.467339922147;ATF6:0.461508510155;AR:0.411301002785;NKX6-1,2:0.398413635781;HBP1_HMGB_SSRP1_UBTF:0.338507522774;YY1:0.31706005346;PITX1..3:0.287994059223;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.262912149207;LHX3,4:0.234330161504;GATA6:0.0993247155389;SREBF1,2:0.0497191876757;FOXO1,3,4:0.00607930234161;ZNF143:-0.0263836574563;NRF1:-0.0268566919936;ZNF148:-0.0732663883649;IRF7:-0.0867100133092;OCT4_SOX2{dimer}:-0.0873884355362;FOXP1:-0.092999888067;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.111023717599;HOXA9_MEIS1:-0.126237037976;PBX1:-0.128437415191;STAT1,3:-0.13166537447;PAX2:-0.147699209163;NFY{A,B,C}:-0.171208202367;IRF1,2:-0.191159610381;FOXN1:-0.214343140072;TFDP1:-0.214562139427;ZBTB16:-0.220739962816;CREB1:-0.265804005605;HNF1A:-0.26830655866;TP53:-0.271412483863;FOXQ1:-0.272218156774;ATF5_CREB3:-0.339025629252;POU1F1:-0.386383213571;SPI1:-0.387465172613;GZF1:-0.394666814739;ATF4:-0.396522586463;FOX{F1,F2,J1}:-0.436324081585;HOX{A5,B5}:-0.460091857205;CDX1,2,4:-0.462906147717;PAX4:-0.485001563022;POU2F1..3:-0.488319789088;HES1:-0.526300079444;HNF4A_NR2F1,2:-0.529870978967;LEF1_TCF7_TCF7L1,2:-0.564464673282;SPIB:-0.57445906027;NFE2L2:-0.580466849699;NKX2-2,8:-0.5920491322;FOSL2:-0.608323458645;ETS1,2:-0.635553187853;NFIX:-0.698904403169;NFE2:-0.713831658937;CEBPA,B_DDIT3:-0.718053878995;HLF:-0.740829357292;DMAP1_NCOR{1,2}_SMARC:-0.804841713238;PPARG:-0.884124745806;EN1,2:-0.888115000756;NFKB1_REL_RELA:-0.89227447605;bHLH_family:-0.919669072897;PDX1:-0.972192638613;FOS_FOS{B,L1}_JUN{B,D}:-1.0100058696;RUNX1..3:-1.02647432126;BACH2:-1.04182109494;E2F1..5:-1.09682040378;ONECUT1,2:-1.22411746989;STAT5{A,B}:-1.27406610054;ELF1,2,4:-1.28586841779;MYB:-1.49537428016;ELK1,4_GABP{A,B1}:-1.75728046843;PAX8:-2.74217391915 | |top_motifs=CRX:7.62613342925;HOX{A6,A7,B6,B7}:5.27025194373;VSX1,2:5.07996333024;TAL1_TCF{3,4,12}:3.62849418609;TBP:3.32087561284;RORA:3.27666607144;PRDM1:2.73525583991;NKX3-2:2.69232004004;PATZ1:2.6364352355;NANOG:2.61649213078;MEF2{A,B,C,D}:2.45360715249;KLF4:2.42370911315;MAZ:2.42149673767;ZIC1..3:2.38802786466;SPZ1:2.31759876136;PAX5:2.27858481954;ESR1:2.25927432972;GATA4:2.2477558949;CDC5L:2.22485369737;GCM1,2:2.19868975446;GTF2I:2.11925041794;REST:2.08924363766;SMAD1..7,9:2.07941168125;GTF2A1,2:2.0384013603;HAND1,2:2.03030667052;HIC1:2.01956061522;MZF1:2.01521827397;GFI1B:1.98807587229;MED-1{core}:1.98609337239;MYFfamily:1.97472618089;MTF1:1.93001529054;TFAP4:1.83399416165;MYOD1:1.81975597979;FOXM1:1.80883586254;EP300:1.79241396365;PAX6:1.78292907653;NR5A1,2:1.77223480791;LMO2:1.74867491789;ADNP_IRX_SIX_ZHX:1.72893449036;MTE{core}:1.72101018039;ZNF423:1.7076947766;NFIL3:1.68230744358;POU6F1:1.63793866756;NKX2-1,4:1.63694091789;ESRRA:1.63206899859;ATF2:1.61691088194;PAX1,9:1.61388292195;NHLH1,2:1.60949296912;SP1:1.60216704166;HSF1,2:1.58756429576;TLX1..3_NFIC{dimer}:1.56912226509;RREB1:1.53093813782;IKZF1:1.51159984521;TFCP2:1.50628058923;EGR1..3:1.50188339883;TGIF1:1.48922239864;TFAP2{A,C}:1.4841273149;ZNF384:1.47077049015;SOX5:1.40576926173;FOXL1:1.3956767046;POU3F1..4:1.35262541726;XCPE1{core}:1.31941896036;TFAP2B:1.31320162426;SOX2:1.30575477551;RBPJ:1.30509115768;ZFP161:1.29344574322;NR1H4:1.28960020693;GLI1..3:1.28204000236;NR6A1:1.26674094576;DBP:1.24408555791;NR3C1:1.2042133244;BREu{core}:1.20208659926;MYBL2:1.19425930969;MAFB:1.18864049832;NFE2L1:1.18786745454;ALX4:1.18753863024;AIRE:1.18694530789;ALX1:1.13846960381;XBP1:1.10596308796;ZBTB6:1.06068644085;TEF:1.00897402326;UFEwm:0.993710098917;GFI1:0.989038695681;NKX2-3_NKX2-5:0.98437404146;AHR_ARNT_ARNT2:0.983768147308;ZNF238:0.973573217994;SNAI1..3:0.961994457301;TBX4,5:0.958625620656;POU5F1:0.943490904206;PRRX1,2:0.935196101677;JUN:0.918200627399;FOXA2:0.913485017892;ARID5B:0.902762463799;CUX2:0.899168370392;RXRA_VDR{dimer}:0.860811692224;FOX{I1,J2}:0.832724230817;HOX{A4,D4}:0.821715479507;SOX17:0.817798630774;SRF:0.816269004446;T:0.808086542862;TOPORS:0.796490934435;SOX{8,9,10}:0.782998794744;ZEB1:0.773985361031;NFATC1..3:0.747102982776;BPTF:0.74545764679;TLX2:0.743284102948;HMX1:0.741189557623;HIF1A:0.737328757018;PAX3,7:0.704177532826;RXR{A,B,G}:0.671314734495;RFX1:0.661955736992;HMGA1,2:0.64147911028;STAT2,4,6:0.585726211642;EVI1:0.583783316666;EBF1:0.561879802162;IKZF2:0.548950783993;TEAD1:0.526740976829;NANOG{mouse}:0.517882687592;RFX2..5_RFXANK_RFXAP:0.513572084348;NKX3-1:0.490220214761;FOXP3:0.487011192683;FOX{D1,D2}:0.472328731065;FOXD3:0.467339922147;ATF6:0.461508510155;AR:0.411301002785;NKX6-1,2:0.398413635781;HBP1_HMGB_SSRP1_UBTF:0.338507522774;YY1:0.31706005346;PITX1..3:0.287994059223;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.262912149207;LHX3,4:0.234330161504;GATA6:0.0993247155389;SREBF1,2:0.0497191876757;FOXO1,3,4:0.00607930234161;ZNF143:-0.0263836574563;NRF1:-0.0268566919936;ZNF148:-0.0732663883649;IRF7:-0.0867100133092;OCT4_SOX2{dimer}:-0.0873884355362;FOXP1:-0.092999888067;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.111023717599;HOXA9_MEIS1:-0.126237037976;PBX1:-0.128437415191;STAT1,3:-0.13166537447;PAX2:-0.147699209163;NFY{A,B,C}:-0.171208202367;IRF1,2:-0.191159610381;FOXN1:-0.214343140072;TFDP1:-0.214562139427;ZBTB16:-0.220739962816;CREB1:-0.265804005605;HNF1A:-0.26830655866;TP53:-0.271412483863;FOXQ1:-0.272218156774;ATF5_CREB3:-0.339025629252;POU1F1:-0.386383213571;SPI1:-0.387465172613;GZF1:-0.394666814739;ATF4:-0.396522586463;FOX{F1,F2,J1}:-0.436324081585;HOX{A5,B5}:-0.460091857205;CDX1,2,4:-0.462906147717;PAX4:-0.485001563022;POU2F1..3:-0.488319789088;HES1:-0.526300079444;HNF4A_NR2F1,2:-0.529870978967;LEF1_TCF7_TCF7L1,2:-0.564464673282;SPIB:-0.57445906027;NFE2L2:-0.580466849699;NKX2-2,8:-0.5920491322;FOSL2:-0.608323458645;ETS1,2:-0.635553187853;NFIX:-0.698904403169;NFE2:-0.713831658937;CEBPA,B_DDIT3:-0.718053878995;HLF:-0.740829357292;DMAP1_NCOR{1,2}_SMARC:-0.804841713238;PPARG:-0.884124745806;EN1,2:-0.888115000756;NFKB1_REL_RELA:-0.89227447605;bHLH_family:-0.919669072897;PDX1:-0.972192638613;FOS_FOS{B,L1}_JUN{B,D}:-1.0100058696;RUNX1..3:-1.02647432126;BACH2:-1.04182109494;E2F1..5:-1.09682040378;ONECUT1,2:-1.22411746989;STAT5{A,B}:-1.27406610054;ELF1,2,4:-1.28586841779;MYB:-1.49537428016;ELK1,4_GABP{A,B1}:-1.75728046843;PAX8:-2.74217391915 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10054-101G9;search_select_hide=table117:FF:10054-101G9 | |||
}} | }} |
Latest revision as of 12:18, 3 June 2020
Name: | eye, fetal, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11762 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11762
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11762
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0354 |
10 | 10 | 0.0134 |
100 | 100 | 0.368 |
101 | 101 | 0.916 |
102 | 102 | 0.837 |
103 | 103 | 0.173 |
104 | 104 | 0.591 |
105 | 105 | 0.371 |
106 | 106 | 0.441 |
107 | 107 | 0.829 |
108 | 108 | 0.815 |
109 | 109 | 0.0126 |
11 | 11 | 0.036 |
110 | 110 | 0.0913 |
111 | 111 | 0.00667 |
112 | 112 | 0.846 |
113 | 113 | 0.0335 |
114 | 114 | 0.103 |
115 | 115 | 0.135 |
116 | 116 | 0.816 |
117 | 117 | 0.00254 |
118 | 118 | 0.0315 |
119 | 119 | 0.376 |
12 | 12 | 0.861 |
120 | 120 | 0.448 |
121 | 121 | 0.763 |
122 | 122 | 0.919 |
123 | 123 | 0.0107 |
124 | 124 | 0.444 |
125 | 125 | 0.69 |
126 | 126 | 0.112 |
127 | 127 | 0.629 |
128 | 128 | 0.83 |
129 | 129 | 0.324 |
13 | 13 | 0.00372 |
130 | 130 | 0.912 |
131 | 131 | 0.227 |
132 | 132 | 0.194 |
133 | 133 | 0.0493 |
134 | 134 | 0.476 |
135 | 135 | 0.819 |
136 | 136 | 0.046 |
137 | 137 | 0.494 |
138 | 138 | 0.334 |
139 | 139 | 0.596 |
14 | 14 | 0.748 |
140 | 140 | 0.4 |
141 | 141 | 0.145 |
142 | 142 | 0.83 |
143 | 143 | 0.00503 |
144 | 144 | 0.708 |
145 | 145 | 0.466 |
146 | 146 | 0.336 |
147 | 147 | 0.146 |
148 | 148 | 0.213 |
149 | 149 | 0.768 |
15 | 15 | 0.0116 |
150 | 150 | 0.304 |
151 | 151 | 0.702 |
152 | 152 | 0.122 |
153 | 153 | 0.795 |
154 | 154 | 0.768 |
155 | 155 | 0.119 |
156 | 156 | 0.792 |
157 | 157 | 0.274 |
158 | 158 | 0.215 |
159 | 159 | 0.961 |
16 | 16 | 0.661 |
160 | 160 | 0.523 |
161 | 161 | 0.153 |
162 | 162 | 0.349 |
163 | 163 | 0.759 |
164 | 164 | 0.00696 |
165 | 165 | 0.613 |
166 | 166 | 0.245 |
167 | 167 | 0.0351 |
168 | 168 | 0.937 |
169 | 169 | 0.00934 |
17 | 17 | 0.268 |
18 | 18 | 0.138 |
19 | 19 | 0.878 |
2 | 2 | 0.258 |
20 | 20 | 0.0327 |
21 | 21 | 0.183 |
22 | 22 | 0.446 |
23 | 23 | 0.731 |
24 | 24 | 0.185 |
25 | 25 | 0.406 |
26 | 26 | 0.00212 |
27 | 27 | 0.769 |
28 | 28 | 0.569 |
29 | 29 | 0.00289 |
3 | 3 | 0.0252 |
30 | 30 | 0.0559 |
31 | 31 | 0.759 |
32 | 32 | 0.0376 |
33 | 33 | 0.0408 |
34 | 34 | 0.466 |
35 | 35 | 0.672 |
36 | 36 | 0.114 |
37 | 37 | 0.0341 |
38 | 38 | 0.478 |
39 | 39 | 0.902 |
4 | 4 | 0.848 |
40 | 40 | 0.135 |
41 | 41 | 0.117 |
42 | 42 | 0.0815 |
43 | 43 | 0.175 |
44 | 44 | 0.934 |
45 | 45 | 0.708 |
46 | 46 | 0.148 |
47 | 47 | 0.0361 |
48 | 48 | 0.081 |
49 | 49 | 0.133 |
5 | 5 | 0.355 |
50 | 50 | 0.608 |
51 | 51 | 0.518 |
52 | 52 | 0.682 |
53 | 53 | 0.778 |
54 | 54 | 0.668 |
55 | 55 | 0.138 |
56 | 56 | 0.705 |
57 | 57 | 0.14 |
58 | 58 | 0.434 |
59 | 59 | 0.859 |
6 | 6 | 0.859 |
60 | 60 | 0.43 |
61 | 61 | 0.0104 |
62 | 62 | 0.378 |
63 | 63 | 0.246 |
64 | 64 | 0.472 |
65 | 65 | 0.742 |
66 | 66 | 0.0282 |
67 | 67 | 0.575 |
68 | 68 | 0.24 |
69 | 69 | 0.877 |
7 | 7 | 0.104 |
70 | 70 | 0.11 |
71 | 71 | 0.00604 |
72 | 72 | 0.308 |
73 | 73 | 0.0171 |
74 | 74 | 0.26 |
75 | 75 | 0.00242 |
76 | 76 | 0.039 |
77 | 77 | 0.773 |
78 | 78 | 0.0966 |
79 | 79 | 0.781 |
8 | 8 | 0.0586 |
80 | 80 | 0.736 |
81 | 81 | 0.498 |
82 | 82 | 0.918 |
83 | 83 | 0.927 |
84 | 84 | 0.423 |
85 | 85 | 0.676 |
86 | 86 | 0.158 |
87 | 87 | 0.00166 |
88 | 88 | 0.5 |
89 | 89 | 0.845 |
9 | 9 | 0.823 |
90 | 90 | 0.0801 |
91 | 91 | 0.787 |
92 | 92 | 0.803 |
93 | 93 | 0.921 |
94 | 94 | 0.0346 |
95 | 95 | 0.0129 |
96 | 96 | 0.43 |
97 | 97 | 0.793 |
98 | 98 | 0.256 |
99 | 99 | 0.371 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11762
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010054 human eye - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000970 (eye)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0002104 (visual system)
0004456 (entire sense organ system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010054 (human eye - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
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