FF:10078-102A6: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	left ventricle, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11789
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	left ventricle
dev stage	73 years old adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	5060611
catalog number	Cat:AM6856
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004828

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11789		CAGE		DRX008673		DRR009545

Accession ID Hg19

Library id		BAM		CTSS
CNhs11789		DRZ000970		DRZ002355

Accession ID Hg38

Library id		BAM		CTSS
CNhs11789		DRZ012320		DRZ013705

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.607
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.368
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.366
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.221
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0702
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.81
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.221
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0.221
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.983
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.69
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.4
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.221
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.37
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.167
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.221
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.221
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.55
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.11
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.221
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.221
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.221
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	1.122
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0.221
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.221
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11789

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.225
MA0003.1	MA0003.1	0.0275
MA0004.1	MA0004.1	0.00992
MA0006.1	MA0006.1	0.178
MA0007.1	MA0007.1	0.186
MA0009.1	MA0009.1	0.0104
MA0014.1	MA0014.1	0.686
MA0017.1	MA0017.1	0.0401
MA0018.2	MA0018.2	0.0123
MA0019.1	MA0019.1	0.0364
MA0024.1	MA0024.1	0.00443
MA0025.1	MA0025.1	0.194
MA0027.1	MA0027.1	0.787
MA0028.1	MA0028.1	9.11864e-9
MA0029.1	MA0029.1	0.699
MA0030.1	MA0030.1	0.92
MA0031.1	MA0031.1	0.865
MA0035.2	MA0035.2	2.1763e-4
MA0038.1	MA0038.1	0.00107
MA0039.2	MA0039.2	0.214
MA0040.1	MA0040.1	0.83
MA0041.1	MA0041.1	0.151
MA0042.1	MA0042.1	0.355
MA0043.1	MA0043.1	7.83593e-4
MA0046.1	MA0046.1	0.0198
MA0047.2	MA0047.2	0.409
MA0048.1	MA0048.1	0.00195
MA0050.1	MA0050.1	0.022
MA0051.1	MA0051.1	0.195
MA0052.1	MA0052.1	1.57711e-32
MA0055.1	MA0055.1	0.0123
MA0057.1	MA0057.1	0.289
MA0058.1	MA0058.1	8.24544e-4
MA0059.1	MA0059.1	0.0193
MA0060.1	MA0060.1	1.77662e-5
MA0061.1	MA0061.1	0.00864
MA0062.2	MA0062.2	1.40854e-15
MA0065.2	MA0065.2	0.00233
MA0066.1	MA0066.1	0.193
MA0067.1	MA0067.1	0.298
MA0068.1	MA0068.1	0.164
MA0069.1	MA0069.1	0.52
MA0070.1	MA0070.1	0.533
MA0071.1	MA0071.1	0.0395
MA0072.1	MA0072.1	0.81
MA0073.1	MA0073.1	0.877
MA0074.1	MA0074.1	0.477
MA0076.1	MA0076.1	5.49531e-10
MA0077.1	MA0077.1	0.35
MA0078.1	MA0078.1	0.593
MA0079.2	MA0079.2	0.183
MA0080.2	MA0080.2	9.54762e-4
MA0081.1	MA0081.1	0.0275
MA0083.1	MA0083.1	0.0065
MA0084.1	MA0084.1	0.979
MA0087.1	MA0087.1	0.484
MA0088.1	MA0088.1	0.011
MA0090.1	MA0090.1	0.0413
MA0091.1	MA0091.1	0.0786
MA0092.1	MA0092.1	0.057
MA0093.1	MA0093.1	0.00597
MA0099.2	MA0099.2	1.92071e-9
MA0100.1	MA0100.1	0.0336
MA0101.1	MA0101.1	0.0753
MA0102.2	MA0102.2	0.206
MA0103.1	MA0103.1	0.975
MA0104.2	MA0104.2	1.34472e-4
MA0105.1	MA0105.1	0.0199
MA0106.1	MA0106.1	0.168
MA0107.1	MA0107.1	0.0394
MA0108.2	MA0108.2	8.43593e-12
MA0111.1	MA0111.1	0.259
MA0112.2	MA0112.2	0.00107
MA0113.1	MA0113.1	0.00486
MA0114.1	MA0114.1	0.0832
MA0115.1	MA0115.1	0.125
MA0116.1	MA0116.1	0.577
MA0117.1	MA0117.1	0.253
MA0119.1	MA0119.1	0.164
MA0122.1	MA0122.1	0.137
MA0124.1	MA0124.1	0.891
MA0125.1	MA0125.1	0.322
MA0131.1	MA0131.1	0.018
MA0135.1	MA0135.1	0.597
MA0136.1	MA0136.1	1.13825e-8
MA0137.2	MA0137.2	0.655
MA0138.2	MA0138.2	0.128
MA0139.1	MA0139.1	0.405
MA0140.1	MA0140.1	0.0535
MA0141.1	MA0141.1	3.21661e-7
MA0142.1	MA0142.1	0.146
MA0143.1	MA0143.1	0.576
MA0144.1	MA0144.1	0.951
MA0145.1	MA0145.1	0.0443
MA0146.1	MA0146.1	0.766
MA0147.1	MA0147.1	3.42518e-4
MA0148.1	MA0148.1	0.386
MA0149.1	MA0149.1	0.948
MA0150.1	MA0150.1	0.149
MA0152.1	MA0152.1	0.256
MA0153.1	MA0153.1	0.717
MA0154.1	MA0154.1	0.256
MA0155.1	MA0155.1	0.028
MA0156.1	MA0156.1	3.909e-8
MA0157.1	MA0157.1	0.946
MA0159.1	MA0159.1	0.00997
MA0160.1	MA0160.1	2.16462e-4
MA0162.1	MA0162.1	0.154
MA0163.1	MA0163.1	0.09
MA0164.1	MA0164.1	0.714
MA0258.1	MA0258.1	0.00363
MA0259.1	MA0259.1	0.0459

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11789

Novel motif	Logo	P-value
1	1	0.701
10	10	0.205
100	100	0.962
101	101	0.526
102	102	0.658
103	103	0.827
104	104	0.651
105	105	0.49
106	106	0.0288
107	107	0.0251
108	108	0.323
109	109	0.705
11	11	0.443
110	110	0.389
111	111	0.97
112	112	0.203
113	113	0.4
114	114	0.689
115	115	0.164
116	116	0.602
117	117	0.0486
118	118	0.246
119	119	0.0494
12	12	0.535
120	120	0.155
121	121	0.571
122	122	0.914
123	123	0.055
124	124	0.749
125	125	0.408
126	126	0.707
127	127	0.485
128	128	0.0911
129	129	0.509
13	13	0.451
130	130	0.644
131	131	0.0458
132	132	0.0564
133	133	0.226
134	134	0.165
135	135	0.202
136	136	0.824
137	137	0.584
138	138	0.461
139	139	0.222
14	14	0.709
140	140	0.428
141	141	0.37
142	142	0.485
143	143	0.614
144	144	0.55
145	145	0.919
146	146	0.481
147	147	0.0295
148	148	0.223
149	149	0.0443
15	15	0.65
150	150	0.514
151	151	0.277
152	152	0.122
153	153	0.287
154	154	0.61
155	155	0.789
156	156	0.214
157	157	0.704
158	158	0.34
159	159	0.308
16	16	0.626
160	160	0.164
161	161	0.695
162	162	0.917
163	163	0.631
164	164	0.128
165	165	0.748
166	166	0.0742
167	167	0.38
168	168	0.0891
169	169	0.0317
17	17	0.435
18	18	0.506
19	19	0.0445
2	2	0.0773
20	20	0.0469
21	21	0.78
22	22	0.101
23	23	0.012
24	24	0.0686
25	25	0.963
26	26	0.426
27	27	0.185
28	28	0.73
29	29	0.0738
3	3	0.648
30	30	0.15
31	31	0.499
32	32	0.428
33	33	0.994
34	34	0.0921
35	35	0.739
36	36	0.451
37	37	0.844
38	38	0.541
39	39	0.142
4	4	0.778
40	40	0.456
41	41	0.409
42	42	0.326
43	43	0.61
44	44	0.00333
45	45	0.144
46	46	0.542
47	47	0.734
48	48	0.584
49	49	0.648
5	5	0.532
50	50	0.828
51	51	0.961
52	52	0.0434
53	53	0.571
54	54	0.663
55	55	0.829
56	56	0.99
57	57	0.572
58	58	0.773
59	59	0.159
6	6	0.783
60	60	0.062
61	61	0.21
62	62	0.273
63	63	0.578
64	64	0.881
65	65	0.0841
66	66	0.0152
67	67	0.551
68	68	0.386
69	69	0.337
7	7	0.78
70	70	0.776
71	71	0.639
72	72	0.495
73	73	0.499
74	74	0.294
75	75	0.172
76	76	0.134
77	77	0.0819
78	78	0.375
79	79	0.118
8	8	0.329
80	80	0.329
81	81	0.592
82	82	0.17
83	83	0.308
84	84	0.371
85	85	0.00552
86	86	0.917
87	87	0.319
88	88	0.885
89	89	0.107
9	9	0.348
90	90	0.232
91	91	0.11
92	92	0.115
93	93	0.642
94	94	0.356
95	95	0.223
96	96	0.394
97	97	0.714
98	98	0.111
99	99	0.0523

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11789

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010078 human left ventricle - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002084 (heart left ventricle)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0004151 (cardiac chamber)
0002082 (cardiac ventricle)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010078 (human left ventricle - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010226 (future cardiac ventricle)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004828
-|accession_numbers=CAGE;DRX008673;DRR009545;DRZ000970;DRZ002355
+|accession_numbers=CAGE;DRX008673;DRR009545;DRZ000970;DRZ002355;DRZ012320;DRZ013705
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0007100,UBERON:0000948,UBERON:0002084,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0004151,UBERON:0002082,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.37!231.07!NKX2-5;;chr15:42749722..42749739,-!p2@ZFP106!2.24!302.58!ZFP106;;chr20:62680984..62680999,-!p1@SOX18!2.15!183.40!SOX18;;chr7:35293685..35293718,-!p1@TBX20!2.10!124.47!TBX20;;chr12:52437488..52437507,+!p2@NR4A1!1.98!95.34!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!1.94!86.07!HAND2;;chr8:11561684..11561751,+!p1@GATA4!1.80!61.57!GATA4;;chr16:54320617..54320643,-!p3@IRX3!1.77!72.83!IRX3;;chr1:40105299..40105326,-!p1@HEYL!1.76!56.28!HEYL;;chr1:214161272..214161322,+!p1@PROX1!1.74!74.82!PROX1;;chr19:46801639..46801699,+!p1@HIF3A!1.70!49.66!HIF3A;;chr14:105935396..105935413,+!p4@MTA1!1.68!47.01!MTA1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!45.68!ZBED1;;chr12:10875658..10875708,-!p2@CSDA!1.63!92.03!CSDA;;chr16:54320646..54320672,-!p2@IRX3!1.58!56.28!IRX3;;chr4:174451350..174451363,-!p3@HAND2!1.55!34.43!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.53!99.98!GATA6;;chr6:126070769..126070801,+!p1@HEY2!1.52!36.42!HEY2;;chr11:113930425..113930471,+!p1@ZBTB16!1.51!44.36!ZBTB16;;chr18:19749386..19749404,+!p2@GATA6!1.50!43.70!GATA6;;chr8:55370487..55370503,+!p1@SOX17!1.50!30.46!SOX17;;chr11:47400078..47400106,-!p1@SPI1!1.48!29.13!SPI1;;chr11:46337652..46337682,+!p16@CREB3L1!1.47!28.47!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.46!27.81!HAND2;;chr8:10588010..10588030,-!p1@SOX7!1.41!24.50!SOX7;;chr3:126076242..126076257,-!p1@KLF15!1.37!27.81!KLF15;;chr6:134210243..134210257,+!p1@TCF21!1.37!22.51!TCF21;;chr21:39870339..39870443,-!p1@ERG!1.29!18.54!ERG;;chr3:69788576..69788648,+!p1@MITF!1.28!94.68!MITF;;chr4:57547454..57547469,-!p1@HOPX!1.28!17.88!HOPX;;chr17:46126136..46126152,+!p1@NFE2L1!1.27!869.33!NFE2L1;;chr16:54964899..54964914,+!p2@IRX5!1.24!16.55!IRX5;;chr5:172662303..172662320,-!p2@NKX2-5!1.24!16.55!NKX2-5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.23!15.89!SEBOX;;chr5:153857778..153857794,-!p1@HAND1!1.21!15.23!HAND1;;chr17:6926362..6926377,+!p1@BCL6B!1.19!14.57!BCL6B;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!37.08!ZFPM2;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.90!ZNF366;;chr18:19749517..19749531,+!p3@GATA6!1.13!22.51!GATA6;;chr8:25902876..25902936,-!p1@EBF2!1.13!12.58!EBF2;;chr19:46800289..46800327,+!p2@HIF3A!1.13!12.58!HIF3A;;chr17:53342311..53342400,+!p1@HLF!1.12!13.90!HLF;;chr2:242556880..242556899,-!p5@THAP4!1.11!11.92!THAP4;;chr16:79634595..79634620,-!p2@MAF!1.09!20.52!MAF;;chr19:22193731..22193751,-!p1@ZNF208!1.09!11.26!ZNF208;;chr11:47400062..47400077,-!p2@SPI1!1.09!11.26!SPI1;;chr1:151804244..151804310,-!p1@RORC!1.09!11.26!RORC;;chr1:216896752..216896778,-!p1@ESRRG!1.09!11.26!ESRRG;;chr1:27240455..27240474,-!p1@NR0B2!1.09!11.26!NR0B2;;chr5:172662230..172662241,-!p3@NKX2-5!1.09!11.26!NKX2-5;;chr16:54320675..54320715,-!p1@IRX3!1.08!23.84!IRX3;;chr7:150945754..150945789,-!p2@SMARCD3!1.07!33.77!SMARCD3;;chr7:15726243..15726293,-!p2@MEOX2!1.06!10.59!MEOX2;;chr10:131762504..131762555,-!p1@EBF3!1.06!10.59!EBF3;;chr1:216896780..216896800,-!p2@ESRRG!1.06!10.59!ESRRG;;chr20:590944..590960,-!p1@TCF15!1.06!10.59!TCF15;;chr11:64073022..64073056,+!p1@ESRRA!1.04!120.50!ESRRA;;chr9:77112244..77112262,+!p1@RORB!1.04!11.26!RORB;;chr4:26165074..26165110,+!p9@RBPJ!1.04!9.93!RBPJ;;chr18:19749353..19749367,+!p4@GATA6!1.04!9.93!GATA6;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!9.93!ZBTB16;;chr8:48650715..48650735,-!p1@CEBPD!1.03!1244.07!CEBPD;;chr16:54320101..54320125,-!p4@IRX3!1.03!13.90!IRX3;;chr3:126076264..126076305,-!p2@KLF15!1.02!13.24!KLF15;;chr10:111985713..111985774,+!p2@MXI1!1.01!88.72!MXI1;;chr18:53068911..53068935,-!p4@TCF4!1.01!10.59!TCF4;;chr6:29648890..29648944,-!p1@ZFP57!1.01!9.27!ZFP57;;chr1:170633058..170633084,+!p5@PRRX1!1.01!9.27!PRRX1;;chr14:73360799..73360817,-!p1@DPF3!1.00!31.78!DPF3;;chr2:46524537..46524553,+!p1@EPAS1!0.99!875.95!EPAS1;;chr16:79634624..79634642,-!p1@MAF!0.99!35.09!MAF;;chr17:1959369..1959388,+!p2@HIC1!0.99!23.84!HIC1;;chr1:61548225..61548299,+!p1@NFIA!0.98!115.87!NFIA;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.92!PRRX1;;chr5:153857800..153857812,-!p2@HAND1!0.98!8.61!HAND1;;chr15:96873984..96873999,+!p3@NR2F2!0.97!63.56!NR2F2;;chr9:102584262..102584276,+!p1@NR4A3!0.97!19.20!NR4A3;;chr17:7492684..7492778,-!p2@SOX15!0.97!17.88!SOX15;;chr19:45908292..45908374,-!p1@PPP1R13L!0.96!73.49!PPP1R13L;;chr1:8483756..8483809,-!p5@RERE!0.96!23.17!RERE;;chrX:107019163..107019179,-!p7@TSC22D3!0.95!9.27!TSC22D3;;chr2:60780753..60780800,-!p1@BCL11A!0.93!38.40!BCL11A;;chr12:10875831..10876025,-!p1@CSDA!0.92!632.30!CSDA;;chr3:69915385..69915438,+!p3@MITF!0.92!7.28!MITF;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.92!7.28!PEG3;;chr6:126070748..126070768,+!p2@HEY2!0.92!7.28!HEY2;;chr17:38256822..38256851,-!p1@NR1D1!0.91!58.93!NR1D1;;chrX:70315688..70315709,+!p1@FOXO4!0.91!17.21!FOXO4;;chr1:170632959..170632987,+!p4@PRRX1!0.91!7.95!PRRX1;;chr13:45010939..45011033,-!p1@TSC22D1!0.90!475.38!TSC22D1;;chr17:40540377..40540481,-!p1@STAT3!0.90!365.47!STAT3;;chr1:61548374..61548415,+!p4@NFIA!0.90!13.24!NFIA;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!31.12!ZBTB20;;chr2:85980951..85981004,+!p1@ATOH8!0.89!11.26!ATOH8;;chr16:54319010..54319041,-!p8@IRX3!0.88!6.62!IRX3;;chr17:41739283..41739297,-!p1@MEOX1!0.88!6.62!MEOX1;;chr18:19749504..19749515,+!p5@GATA6!0.88!6.62!GATA6;;chr18:53177984..53178004,-!p17@TCF4!0.88!6.62!TCF4;;chr12:10856713..10856723,-!p23@CSDA!0.88!6.62!CSDA;;chr14:105935426..105935440,+!p9@MTA1!0.88!6.62!MTA1;;chr19:16435625..16435682,+!p1@KLF2!0.87!221.14!KLF2;;chr2:46524897..46524911,+!p2@EPAS1!0.87!18.54!EPAS1;;chrX:106960285..106960299,-!p1@TSC22D3!0.86!178.76!TSC22D3;;chr3:18466787..18466839,-!p1@SATB1!0.86!29.79!SATB1;;chr2:19558373..19558392,-!p1@OSR1!0.86!17.88!OSR1;;chr16:54320158..54320200,-!p5@IRX3!0.86!9.27!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.86!9.27!IRX5;;chr8:80679993..80680011,-!p1@HEY1!0.86!9.27!HEY1;;chr17:40540484..40540537,-!p2@STAT3!0.85!61.57!STAT3;;chr1:61547894..61547968,+!p2@NFIA!0.85!18.54!NFIA;;chr21:40177845..40177863,+!p1@ETS2!0.84!374.74!ETS2;;chr1:8483878..8483907,-!p4@RERE!0.84!24.50!RERE;;chr15:100106244..100106259,+!p2@MEF2A!0.84!14.57!MEF2A;;chr16:67198633..67198671,+!p1@HSF4!0.84!5.96!HSF4;;chr11:128457446..128457461,-!p4@ETS1!0.84!5.96!ETS1;;chrX:24167548..24167617,+!p2@ZFX!0.83!18.54!ZFX;;chr13:72441315..72441454,-!p1@DACH1!0.83!11.92!DACH1;;chr1:8483723..8483752,-!p12@RERE!0.83!9.27!RERE;;chr1:170633262..170633285,+!p3@PRRX1!0.83!6.62!PRRX1;;chr20:39317868..39317884,-!p1@MAFB!0.82!71.51!MAFB;;chr3:12329358..12329393,+!p3@PPARG!0.82!14.57!PPARG;;chr10:35484053..35484076,+!p1@CREM!0.81!14.57!CREM;;chr5:158526917..158526932,-!p1@EBF1!0.81!14.57!EBF1;;chr12:10854595..10854628,-!p7@CSDA!0.81!7.95!CSDA;;chr9:102584159..102584174,+!p2@NR4A3!0.80!9.93!NR4A3;;chrX:66763856..66763896,+!p1@AR!0.80!7.95!AR;;chr9:124991204..124991246,-!p1@LHX6!0.80!5.30!LHX6;;chr7:150945865..150945896,-!p4@SMARCD3!0.80!5.30!SMARCD3;;chr4:149363494..149363543,-!p1@NR3C2!0.80!5.30!NR3C2;;chr1:10856694..10856715,-!p3@CASZ1!0.80!5.30!CASZ1;;chr1:214161328..214161348,+!p2@PROX1!0.80!5.30!PROX1;;chr11:47399996..47400014,-!p4@SPI1!0.80!5.30!SPI1;;chr16:54320322..54320343,-!p7@IRX3!0.80!5.30!IRX3;;chr18:53177899..53177918,-!p33@TCF4!0.80!5.30!TCF4;;chr12:52445218..52445237,+!p1@NR4A1!0.79!70.84!NR4A1;;chr10:35484804..35484902,+!p2@CREM!0.79!21.19!CREM;;chr5:88178983..88179012,-!p1@MEF2C!0.78!42.37!MEF2C;;chr10:63809013..63809041,+!p3@ARID5B!0.78!30.46!ARID5B;;chr19:38183208..38183225,-!p1@ZNF781!0.78!6.62!ZNF781;;chr4:87856191..87856208,+!p2@AFF1!0.77!42.37!AFF1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.77!22.51!LRRFIP2;;chr8:71316428..71316459,-!p2@NCOA2!0.77!8.61!NCOA2;;chr9:73028814..73028895,-!p1@KLF9!0.76!51.64!KLF9;;chr2:145277882..145277967,-!p3@ZEB2!0.76!8.61!ZEB2;;chr12:10875612..10875631,-!p9@CSDA!0.76!5.96!CSDA;;chr21:40177892..40177903,+!p2@ETS2!0.75!20.52!ETS2;;chr1:61548069..61548102,+!p3@NFIA!0.75!11.92!NFIA;;chr19:38183228..38183242,-!p4@ZNF781!0.75!4.63!ZNF781;;chr2:145188354..145188371,-!p34@ZEB2!0.75!4.63!ZEB2;;chr2:242556900..242556916,-!p6@THAP4!0.75!4.63!THAP4;;chr2:68592406..68592424,+!p1@PLEK!0.75!4.63!PLEK;;chr5:2751762..2751784,-!p1@IRX2!0.75!4.63!IRX2;;chr7:15726296..15726315,-!p1@MEOX2!0.75!4.63!MEOX2;;chr7:1577899..1577943,+!p3@MAFK!0.75!4.63!MAFK;;chr7:35293665..35293680,-!p2@TBX20!0.75!4.63!TBX20;;chr7:50344289..50344323,+!p1@IKZF1!0.75!4.63!IKZF1;;chr7:63505799..63505904,+!p1@ZNF727!0.75!4.63!ZNF727;;chr11:101000445..101000465,-!p5@PGR!0.75!4.63!PGR;;chr11:47400032..47400043,-!p5@SPI1!0.75!4.63!SPI1;;chr11:8040739..8040815,+!p4@TUB!0.75!4.63!TUB;;chr12:114843607..114843621,-!p7@TBX5!0.75!4.63!TBX5;;chr16:85932760..85932775,+!p1@IRF8!0.75!4.63!IRF8;;chr9:14314131..14314147,-!p2@NFIB!0.74!27.81!NFIB;;chr22:46546406..46546440,+!p1@PPARA!0.74!11.92!PPARA;;chr18:52989031..52989079,-!p2@TCF4!0.74!11.26!TCF4;;chr2:10183651..10183713,+!p1@KLF11!0.73!35.75!KLF11;;chr1:23696308..23696339,-!p2@ZNF436!0.73!9.93!ZNF436;;chr8:71316403..71316427,-!p6@NCOA2!0.73!5.30!NCOA2;;chr18:56530692..56530723,+!p2@ZNF532!0.72!10.59!ZNF532;;chr2:46524878..46524891,+!p3@EPAS1!0.72!7.95!EPAS1;;chr15:42783305..42783348,-!p1@ZFP106!0.71!74.15!ZFP106;;chr15:42743341..42743377,-!p3@ZFP106!0.71!7.28!ZFP106;;chr9:102584241..102584261,+!p4@NR4A3!0.70!6.62!NR4A3;;chr8:106330696..106330719,+!p2@ZFPM2!0.70!5.30!ZFPM2;;chr5:1887070..1887114,-!p1@IRX4!0.70!3.97!IRX4;;chr17:46128269..46128283,+!p25@NFE2L1!0.70!3.97!NFE2L1;;chr3:24536231..24536249,-!p4@THRB!0.70!3.97!THRB;;chr1:10856665..10856683,-!p4@CASZ1!0.70!3.97!CASZ1;;chr1:201979703..201979721,+!p2@ELF3!0.70!3.97!ELF3;;chr1:214161358..214161377,+!p3@PROX1!0.70!3.97!PROX1;;chr1:217262933..217262968,-!p3@ESRRG!0.70!3.97!ESRRG;;chr1:2461692..2461710,-!p1@HES5!0.70!3.97!HES5;;chr12:10875548..10875563,-!p13@CSDA!0.70!3.97!CSDA;;chr12:114843852..114843867,-!p3@TBX5!0.70!3.97!TBX5;;chr14:105935576..105935594,+!p11@MTA1!0.70!3.97!MTA1;;chrX:106960221..106960236,-!p3@TSC22D3!0.69!11.92!TSC22D3;;chr11:12696002..12696022,+!p2@TEAD1!0.69!10.59!TEAD1;;chr3:24536253..24536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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010226,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10078-102A6
 |is_a=EFO:0002091;;FF:0010078
 |is_obsolete=
 |library_id=CNhs11789
-|library_id_phase_based=1:CNhs11789
+|library_id_phase_based=2:CNhs11789
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10078
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10078
 |name=left ventricle, adult, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11789,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10078-102A6;search_select_hide=table117:FF:10078-102A6
 }}

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FF:10078-102A6: Difference between revisions

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Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0