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(Created page with "{{f5samples |id=FF:10177-103C6 |name=caudate nucleus - adult, donor10196 |sample_id=10177 |rna_tube_id=103C6 |rna_box=103 |rna_position=C6 |sample_cell_lot=NA |sample_cell_cat...")
 
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{{f5samples
{{f5samples
|id=FF:10177-103C6
|DRA_sample_Accession=CAGE@SAMD00005155
|name=caudate nucleus - adult, donor10196
|accession_numbers=CAGE;DRX008629;DRR009501;DRZ000926;DRZ002311;DRZ012276;DRZ013661
|sample_id=10177
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001873,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0005383,UBERON:0010011,UBERON:0000204,UBERON:0005382,UBERON:0000454
|rna_tube_id=103C6
|rna_box=103
|rna_position=C6
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=caudate nucleus
|sample_donor(cell lot)=donor: 10196
|sample_sex=female
|sample_age=60
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.23
|rna_od260/280=1.97
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Peter Heutink
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=31.52925
|rna_concentration=0.42039
|sample_note=
|profile_hcage=CNhs13802,LSID1086,release014,COMPLETED
|profile_cagescan=
|profile_srnaseq=
|profile_rnaseq=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000073,UBERON:0000125,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001869,UBERON:0001873,UBERON:0001890,UBERON:0001893,UBERON:0002020,UBERON:0002050,UBERON:0002308,UBERON:0002346,UBERON:0002420,UBERON:0002435,UBERON:0002532,UBERON:0002616,UBERON:0002780,UBERON:0002791,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0003528,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005382,UBERON:0005383,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010164
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.47!295.84!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.45!279.01!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.41!255.09!PEG3;;chr15:80735246..80735321,+!p3@ARNT2!2.10!124.00!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!1.91!202.83!ZNF483;;chr22:38380543..38380569,-!p1@SOX10!1.91!79.72!SOX10;;chr3:181429704..181429722,+!p1@SOX2!1.90!78.83!SOX2;;chr12:106976678..106976708,+!p2@RFX4!1.87!72.63!RFX4;;chr11:61520075..61520136,+!p1@C11orf9!1.86!145.26!C11orf9;;chr8:40755333..40755352,-!p1@ZMAT4!1.85!69.97!ZMAT4;;chr14:29234581..29234601,+!p2@FOXG1!1.85!69.09!FOXG1;;chr17:53342311..53342400,+!p1@HLF!1.83!76.17!HLF;;chr21:34398234..34398250,+!p1@OLIG2!1.77!58.46!OLIG2;;chr12:106976774..106976788,+!p1@RFX4!1.76!56.69!RFX4;;chr18:55102598..55102623,+!p1@ONECUT2!1.76!56.69!ONECUT2;;chr10:118897911..118897974,-!p1@VAX1!1.75!54.92!VAX1;;chr21:34442540..34442560,+!p2@OLIG1!1.74!54.03!OLIG1;;chr2:60781201..60781258,-!p3@BCL11A!1.74!54.03!BCL11A;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.71!50.49!SMARCE1;;chr13:72441315..72441454,-!p1@DACH1!1.70!94.77!DACH1;;chr10:48355030..48355090,+!p1@ZNF488!1.70!62.00!ZNF488;;chr2:2334997..2335053,-!p1@MYT1L!1.65!43.40!MYT1L;;chrX:25034067..25034088,-!p1@ARX!1.65!43.40!ARX;;chr12:26277817..26277863,-!p2@BHLHE41!1.60!52.26!BHLHE41;;chr14:29235961..29236008,+!p1@FOXG1!1.60!38.97!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.59!54.92!CSRNP3;;chr9:77112244..77112262,+!p1@RORB!1.58!41.63!RORB;;chr2:145277882..145277967,-!p3@ZEB2!1.56!59.34!ZEB2;;chr8:53322304..53322340,-!p1@ST18!1.55!34.54!ST18;;chr11:31832862..31832884,-!p2@PAX6!1.55!34.54!PAX6;;chr14:33403881..33403924,+!p1@NPAS3!1.53!32.77!NPAS3;;chr17:70117153..70117174,+!p1@SOX9!1.52!312.67!SOX9;;chr9:126774018..126774055,+!p1@LHX2!1.52!31.89!LHX2;;chrX:85969626..85969664,+!p1@DACH2!1.51!31.00!DACH2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.51!31.00!POU3F3;;chr3:181429741..181429767,+!p2@SOX2!1.48!29.23!SOX2;;chr16:1031762..1031781,+!p1@SOX8!1.48!29.23!SOX8;;chrX:82763292..82763317,+!p1@POU3F4!1.47!28.34!POU3F4;;chr2:45168997..45169020,+!p4@SIX3!1.45!27.46!SIX3;;chr19:46801639..46801699,+!p1@HIF3A!1.43!25.69!HIF3A;;chr19:57352109..57352153,-!p2@ZIM2!1.43!25.69!ZIM2;;chr6:19837592..19837621,+!p1@ID4!1.42!149.69!ID4;;chr7:63505799..63505904,+!p1@ZNF727!1.41!24.80!ZNF727;;chr11:31832658..31832681,-!p1@PAX6!1.41!24.80!PAX6;;chr10:64134120..64134183,+!p1@ZNF365!1.40!29.23!ZNF365;;chr15:31658288..31658338,+!p4@KLF13!1.40!23.92!KLF13;;chr13:72441074..72441172,-!p2@DACH1!1.38!23.03!DACH1;;chr2:180726291..180726311,-!p1@ZNF385B!1.36!22.14!ZNF385B;;chr2:45168959..45168990,+!p6@SIX3!1.35!21.26!SIX3;;chr8:53322347..53322378,-!p2@ST18!1.35!21.26!ST18;;chr2:45168875..45168916,+!p1@SIX3!1.33!20.37!SIX3;;chr10:119302232..119302265,+!p1@EMX2!1.33!20.37!EMX2;;chr11:125034640..125034655,+!p1@PKNOX2!1.33!20.37!PKNOX2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.33!20.37!ZSCAN1;;chr19:38085768..38085821,+!p1@ZNF540!1.32!29.23!ZNF540;;chr7:96635448..96635470,+!p5@DLX6!1.31!19.49!DLX6;;chr1:214161272..214161322,+!p1@PROX1!1.29!25.69!PROX1;;chr2:95963052..95963106,+!p1@KCNIP3!1.29!18.60!KCNIP3;;chr12:103351444..103351461,+!p1@ASCL1!1.29!18.60!ASCL1;;chr15:80696703..80696754,+!p1@ARNT2!1.28!23.92!ARNT2;;chr12:26277956..26277980,-!p1@BHLHE41!1.27!62.00!BHLHE41;;chr18:55102628..55102646,+!p2@ONECUT2!1.27!17.71!ONECUT2;;chr7:96654133..96654150,-!p1@DLX5!1.25!16.83!DLX5;;chr22:41763274..41763318,+!p3@TEF!1.25!16.83!TEF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.83!ZBED1;;chr17:74137321..74137337,-!p1@FOXJ1!1.23!15.94!FOXJ1;;chr1:165414325..165414369,-!p1@RXRG!1.23!15.94!RXRG;;chr12:54779511..54779577,-!p5@ZNF385A!1.23!15.94!ZNF385A;;chr3:141105235..141105307,+!p7@ZBTB38!1.23!15.94!ZBTB38;;chr2:180726254..180726275,-!p4@ZNF385B!1.21!15.06!ZNF385B;;chr1:40105299..40105326,-!p1@HEYL!1.21!15.06!HEYL;;chr14:29236269..29236285,+!p3@FOXG1!1.21!15.06!FOXG1;;chr11:113930425..113930471,+!p1@ZBTB16!1.20!21.26!ZBTB16;;chr14:33408072..33408114,+!p2@NPAS3!1.20!17.71!NPAS3;;chr3:126076242..126076257,-!p1@KLF15!1.18!17.71!KLF15;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.17!EMX2;;chr7:96634878..96634900,+!p2@DLX6!1.18!14.17!DLX6;;chr7:96635665..96635685,+!p6@DLX6!1.18!14.17!DLX6;;chr20:62680984..62680999,-!p1@SOX18!1.16!17.71!SOX18;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.15!13.29!POU3F3;;chr2:180726331..180726344,-!p5@ZNF385B!1.15!13.29!ZNF385B;;chr19:13135582..13135600,+!p3@NFIX!1.15!13.29!NFIX;;chr5:138609489..138609542,+!p8@MATR3!1.15!13.29!MATR3;;chr10:134599649..134599653,-!p1@NKX6-2!1.15!13.29!NKX6-2;;chr14:58797974..58798011,+!p3@ARID4A!1.15!13.29!ARID4A;;chr7:28725740..28725778,+!p1@CREB5!1.14!113.37!CREB5;;chr19:21512202..21512225,-!p1@ZNF708!1.14!65.54!ZNF708;;chr19:13135386..13135435,+!p4@NFIX!1.13!12.40!NFIX;;chr21:34442584..34442587,+!p3@OLIG1!1.13!12.40!OLIG1;;chr12:26277929..26277955,-!p3@BHLHE41!1.11!16.83!BHLHE41;;chr19:38183208..38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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001873;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002435;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005382;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010122,UBERON:0010316
|fonse_cell_line=
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|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%2520-%2520adult%252c%2520donor10196.CNhs13802.10177-103C6.hg19.nobarcode.rdna.fa.gz
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%2520-%2520adult%252c%2520donor10196.CNhs13802.10177-103C6.hg38.nobarcode.ctss.bed.gz
|id=FF:10177-103C6
|is_a=EFO:0002091;;FF:0010164
|is_obsolete=
|library_id=CNhs13802
|library_id_phase_based=2:CNhs13802
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10177
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10177
|name=caudate nucleus - adult, donor10196
|namespace=FANTOM5
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|rna_box=103
|rna_catalog_number=
|rna_concentration=0.42039
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.23
|rna_od260/280=1.97
|rna_position=C6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=103C6
|rna_weight_ug=31.52925
|sample_age=60
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Peter Heutink
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor: 10196
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.42305001673985e-284!GO:0005737;cytoplasm;5.37115361450273e-146!GO:0044444;cytoplasmic part;1.33195449970213e-97!GO:0043226;organelle;3.04032247308605e-97!GO:0043229;intracellular organelle;1.34531287171886e-96!GO:0043227;membrane-bound organelle;4.07640151995265e-89!GO:0043231;intracellular membrane-bound organelle;7.60877041796488e-89!GO:0044422;organelle part;1.80602183901538e-67!GO:0044446;intracellular organelle part;1.9513392105041e-66!GO:0032991;macromolecular complex;3.30853824395079e-63!GO:0005515;protein binding;1.13872650400658e-62!GO:0030529;ribonucleoprotein complex;4.24930471416452e-44!GO:0016043;cellular component organization and biogenesis;5.32127839005257e-44!GO:0005739;mitochondrion;2.67084970592422e-42!GO:0003723;RNA binding;4.52923787468251e-40!GO:0031090;organelle membrane;2.86875435862928e-35!GO:0043234;protein complex;1.49344497946492e-34!GO:0033036;macromolecule localization;8.88840913237537e-33!GO:0015031;protein transport;1.76770126535255e-32!GO:0044429;mitochondrial part;7.52515384797192e-31!GO:0046907;intracellular transport;3.02151519872248e-30!GO:0008104;protein localization;1.67587936335125e-29!GO:0045184;establishment of protein localization;1.69983461973135e-29!GO:0043233;organelle lumen;2.82624999530095e-29!GO:0031974;membrane-enclosed lumen;2.82624999530095e-29!GO:0044428;nuclear part;7.48570895563306e-29!GO:0044238;primary metabolic process;1.69795056620586e-28!GO:0044237;cellular metabolic process;8.46178330377852e-28!GO:0005829;cytosol;3.67133513747693e-27!GO:0031975;envelope;3.00058705355868e-26!GO:0031967;organelle envelope;3.3729531214975e-26!GO:0016071;mRNA metabolic process;5.68688319757457e-26!GO:0019538;protein metabolic process;8.97543504646563e-26!GO:0043170;macromolecule metabolic process;1.16607092400867e-25!GO:0006396;RNA processing;1.19977510365863e-25!GO:0051649;establishment of cellular localization;2.85683602132983e-25!GO:0051641;cellular localization;4.10124947938447e-25!GO:0005840;ribosome;1.33586043270677e-24!GO:0008380;RNA splicing;2.95709986139043e-24!GO:0044260;cellular macromolecule metabolic process;8.40771739104534e-23!GO:0006397;mRNA processing;3.48024576899283e-22!GO:0016192;vesicle-mediated transport;4.66331789043191e-22!GO:0044267;cellular protein metabolic process;5.26428930250459e-22!GO:0006412;translation;1.18732798995891e-21!GO:0006886;intracellular protein transport;1.40288388068498e-21!GO:0006119;oxidative phosphorylation;3.08587092986742e-21!GO:0005740;mitochondrial envelope;3.26593405083008e-21!GO:0031966;mitochondrial membrane;4.15848331992024e-21!GO:0005634;nucleus;4.78681890383008e-21!GO:0003735;structural constituent of ribosome;5.30740447025383e-21!GO:0019866;organelle inner membrane;4.38452229359013e-19!GO:0005743;mitochondrial inner membrane;1.5672554304913e-18!GO:0033279;ribosomal subunit;2.03050562741037e-18!GO:0006996;organelle organization and biogenesis;5.47613753100039e-18!GO:0065003;macromolecular complex assembly;5.64278372472573e-18!GO:0009058;biosynthetic process;2.87597056686397e-17!GO:0031981;nuclear lumen;1.06757857666838e-16!GO:0044455;mitochondrial membrane part;4.66994912383855e-16!GO:0005794;Golgi apparatus;5.29629632049488e-16!GO:0005681;spliceosome;5.50419125368605e-16!GO:0000166;nucleotide binding;6.47044586978126e-16!GO:0044249;cellular biosynthetic process;6.7555903085782e-16!GO:0022607;cellular component assembly;8.88071846329023e-16!GO:0009059;macromolecule biosynthetic process;3.58770358388266e-15!GO:0031982;vesicle;8.0369795500524e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.04103789523061e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.75067790386733e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.17480890479415e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.35439996329914e-14!GO:0003954;NADH dehydrogenase activity;1.35439996329914e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.35439996329914e-14!GO:0016462;pyrophosphatase activity;1.36374700820552e-14!GO:0005746;mitochondrial respiratory chain;1.59160044954936e-14!GO:0031410;cytoplasmic vesicle;5.51571589764513e-14!GO:0017111;nucleoside-triphosphatase activity;6.09893130385594e-14!GO:0031988;membrane-bound vesicle;9.88377051556791e-14!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.63493413207894e-13!GO:0012505;endomembrane system;1.9845343676633e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.1308518475179e-13!GO:0044445;cytosolic part;2.68960456396052e-13!GO:0016023;cytoplasmic membrane-bound vesicle;6.44950113193105e-13!GO:0006457;protein folding;6.92655811981743e-13!GO:0043283;biopolymer metabolic process;9.59908088604966e-13!GO:0006512;ubiquitin cycle;1.26370978817354e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.46007941376484e-12!GO:0045271;respiratory chain complex I;1.46007941376484e-12!GO:0005747;mitochondrial respiratory chain complex I;1.46007941376484e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.39705521588244e-12!GO:0042773;ATP synthesis coupled electron transport;2.39705521588244e-12!GO:0043228;non-membrane-bound organelle;2.58437532613858e-12!GO:0043232;intracellular non-membrane-bound organelle;2.58437532613858e-12!GO:0031980;mitochondrial lumen;2.58437532613858e-12!GO:0005759;mitochondrial matrix;2.58437532613858e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.04077058063565e-12!GO:0022618;protein-RNA complex assembly;9.9159024635499e-12!GO:0032553;ribonucleotide binding;1.43999181073554e-11!GO:0032555;purine ribonucleotide binding;1.43999181073554e-11!GO:0016874;ligase activity;2.25360415537365e-11!GO:0048193;Golgi vesicle transport;4.12907311980947e-11!GO:0048770;pigment granule;4.56326977148494e-11!GO:0042470;melanosome;4.56326977148494e-11!GO:0017076;purine nucleotide binding;6.95772428532838e-11!GO:0010467;gene expression;9.36888803589464e-11!GO:0005654;nucleoplasm;1.66317263799199e-10!GO:0043412;biopolymer modification;1.89995554813573e-10!GO:0043687;post-translational protein modification;3.17997958565744e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.20468053343103e-10!GO:0008135;translation factor activity, nucleic acid binding;3.42210340769909e-10!GO:0019829;cation-transporting ATPase activity;4.32660804382439e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.30013810487328e-10!GO:0045045;secretory pathway;8.6364363537383e-10!GO:0006605;protein targeting;9.51559566521206e-10!GO:0006464;protein modification process;9.51559566521206e-10!GO:0015934;large ribosomal subunit;1.19386770690876e-09!GO:0044451;nucleoplasm part;1.27493974349578e-09!GO:0051082;unfolded protein binding;1.28860758653413e-09!GO:0003924;GTPase activity;1.35618626734355e-09!GO:0015935;small ribosomal subunit;1.41593573102528e-09!GO:0000502;proteasome complex (sensu Eukaryota);4.20876625218555e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;6.40335680820308e-09!GO:0008565;protein transporter activity;6.8144451114149e-09!GO:0006511;ubiquitin-dependent protein catabolic process;7.38079408402406e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.06659711441647e-09!GO:0006793;phosphorus metabolic process;9.37843870255812e-09!GO:0006796;phosphate metabolic process;9.37843870255812e-09!GO:0019941;modification-dependent protein catabolic process;9.70440645047105e-09!GO:0043632;modification-dependent macromolecule catabolic process;9.70440645047105e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;9.77688881306451e-09!GO:0000375;RNA splicing, via transesterification reactions;9.77688881306451e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.77688881306451e-09!GO:0044257;cellular protein catabolic process;1.11697142320161e-08!GO:0016044;membrane organization and biogenesis;1.25180283339474e-08!GO:0008092;cytoskeletal protein binding;1.39069659213632e-08!GO:0006446;regulation of translational initiation;3.05272115122721e-08!GO:0044265;cellular macromolecule catabolic process;3.12571133428944e-08!GO:0015630;microtubule cytoskeleton;3.54006130388618e-08!GO:0030695;GTPase regulator activity;4.63266950296295e-08!GO:0015986;ATP synthesis coupled proton transport;4.70742713443252e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.70742713443252e-08!GO:0008134;transcription factor binding;4.99544052384955e-08!GO:0006413;translational initiation;5.19875947740086e-08!GO:0016604;nuclear body;6.86370399043068e-08!GO:0005525;GTP binding;9.48510184132306e-08!GO:0051186;cofactor metabolic process;1.08942184708581e-07!GO:0007264;small GTPase mediated signal transduction;1.08942184708581e-07!GO:0005783;endoplasmic reticulum;1.16284492559174e-07!GO:0003743;translation initiation factor activity;1.20155533854619e-07!GO:0044431;Golgi apparatus part;1.20270566760749e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.24659272054655e-07!GO:0007010;cytoskeleton organization and biogenesis;1.56953375749284e-07!GO:0016607;nuclear speck;1.935453977702e-07!GO:0005761;mitochondrial ribosome;2.09143518380626e-07!GO:0000313;organellar ribosome;2.09143518380626e-07!GO:0030135;coated vesicle;2.09695911772386e-07!GO:0044248;cellular catabolic process;2.29275410776295e-07!GO:0009060;aerobic respiration;2.69761641652275e-07!GO:0005768;endosome;3.22847624893266e-07!GO:0030163;protein catabolic process;3.75323921861342e-07!GO:0043285;biopolymer catabolic process;3.75323921861342e-07!GO:0006461;protein complex assembly;4.50991691524152e-07!GO:0008639;small protein conjugating enzyme activity;4.95525800904324e-07!GO:0046034;ATP metabolic process;5.11080439710052e-07!GO:0006810;transport;6.98428723251762e-07!GO:0004842;ubiquitin-protein ligase activity;7.04029046841973e-07!GO:0005730;nucleolus;7.53282050015108e-07!GO:0009141;nucleoside triphosphate metabolic process;7.86738807636317e-07!GO:0045333;cellular respiration;8.37016820943616e-07!GO:0016310;phosphorylation;9.74945023402572e-07!GO:0032561;guanyl ribonucleotide binding;1.05473530915917e-06!GO:0019001;guanyl nucleotide binding;1.05473530915917e-06!GO:0006913;nucleocytoplasmic transport;1.13783137643143e-06!GO:0031965;nuclear membrane;1.22654331149504e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.30427604955124e-06!GO:0048471;perinuclear region of cytoplasm;1.37883911502684e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.405063724988e-06!GO:0006754;ATP biosynthetic process;1.405063724988e-06!GO:0006753;nucleoside phosphate metabolic process;1.405063724988e-06!GO:0051169;nuclear transport;1.55706648990845e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.63158737655841e-06!GO:0019787;small conjugating protein ligase activity;1.91224983427809e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.91224983427809e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.91224983427809e-06!GO:0032559;adenyl ribonucleotide binding;2.06092692886437e-06!GO:0051179;localization;2.25502781175968e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.30466195245036e-06!GO:0032940;secretion by cell;2.6817024530981e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.78249478206906e-06!GO:0009057;macromolecule catabolic process;3.17720591192922e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.44435014626339e-06!GO:0006163;purine nucleotide metabolic process;3.49068721919327e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.78933770487858e-06!GO:0005083;small GTPase regulator activity;3.938459821411e-06!GO:0005635;nuclear envelope;4.35946556427591e-06!GO:0005524;ATP binding;4.57049683853056e-06!GO:0015631;tubulin binding;4.82493829137213e-06!GO:0048475;coated membrane;4.92087132518337e-06!GO:0030117;membrane coat;4.92087132518337e-06!GO:0005874;microtubule;4.97796607380132e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.34286384822724e-06!GO:0009150;purine ribonucleotide metabolic process;5.45689802210244e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.21507743321596e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.21507743321596e-06!GO:0048523;negative regulation of cellular process;7.2205818455944e-06!GO:0030554;adenyl nucleotide binding;7.60920778968688e-06!GO:0045259;proton-transporting ATP synthase complex;7.99809189540626e-06!GO:0043005;neuron projection;8.74230960716693e-06!GO:0009142;nucleoside triphosphate biosynthetic process;8.84232876619059e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.84232876619059e-06!GO:0006164;purine nucleotide biosynthetic process;8.97242919729545e-06!GO:0009259;ribonucleotide metabolic process;9.6251378197389e-06!GO:0000139;Golgi membrane;1.04446209740924e-05!GO:0016881;acid-amino acid ligase activity;1.11922846789199e-05!GO:0016887;ATPase activity;1.20045042441572e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.39335239092229e-05!GO:0009055;electron carrier activity;1.42671403781386e-05!GO:0007399;nervous system development;1.49033047374278e-05!GO:0030029;actin filament-based process;1.61117606434917e-05!GO:0006099;tricarboxylic acid cycle;1.61117606434917e-05!GO:0046356;acetyl-CoA catabolic process;1.61117606434917e-05!GO:0006732;coenzyme metabolic process;1.6890078239497e-05!GO:0006897;endocytosis;1.94405302157325e-05!GO:0010324;membrane invagination;1.94405302157325e-05!GO:0031252;leading edge;2.4568342259815e-05!GO:0005905;coated pit;2.48629674015405e-05!GO:0051234;establishment of localization;2.80136588530765e-05!GO:0042623;ATPase activity, coupled;2.89453149476733e-05!GO:0019717;synaptosome;3.42816018124786e-05!GO:0051246;regulation of protein metabolic process;3.52604530714662e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.16273337055749e-05!GO:0007242;intracellular signaling cascade;4.21906116930642e-05!GO:0044432;endoplasmic reticulum part;4.37639222659327e-05!GO:0009260;ribonucleotide biosynthetic process;4.37639222659327e-05!GO:0019899;enzyme binding;4.50896233081631e-05!GO:0006084;acetyl-CoA metabolic process;4.71422780815224e-05!GO:0009109;coenzyme catabolic process;4.76022641437588e-05!GO:0006403;RNA localization;4.8237907787349e-05!GO:0051128;regulation of cellular component organization and biogenesis;4.85867564787844e-05!GO:0008287;protein serine/threonine phosphatase complex;5.132747640385e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.82860368181078e-05!GO:0015399;primary active transmembrane transporter activity;5.82860368181078e-05!GO:0005875;microtubule associated complex;6.02506830504817e-05!GO:0050657;nucleic acid transport;6.04863090345327e-05!GO:0051236;establishment of RNA localization;6.04863090345327e-05!GO:0050658;RNA transport;6.04863090345327e-05!GO:0008047;enzyme activator activity;6.72285405714092e-05!GO:0030120;vesicle coat;7.30004241657328e-05!GO:0030662;coated vesicle membrane;7.30004241657328e-05!GO:0000245;spliceosome assembly;8.57866253870767e-05!GO:0032446;protein modification by small protein conjugation;8.69919876339784e-05!GO:0005643;nuclear pore;9.22183868870865e-05!GO:0044440;endosomal part;9.31219347187262e-05!GO:0010008;endosome membrane;9.31219347187262e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000100470045582498!GO:0005769;early endosome;0.000108314591832833!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000110747988665381!GO:0048519;negative regulation of biological process;0.000113151661672264!GO:0003712;transcription cofactor activity;0.000114141161426456!GO:0016567;protein ubiquitination;0.000117041434517835!GO:0051187;cofactor catabolic process;0.000118715504729087!GO:0044453;nuclear membrane part;0.000130669326469895!GO:0005789;endoplasmic reticulum membrane;0.000130727165757684!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000154099833735397!GO:0005096;GTPase activator activity;0.000159081716524366!GO:0022890;inorganic cation transmembrane transporter activity;0.000161066470718379!GO:0003779;actin binding;0.000165278058055323!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000172433338903534!GO:0006888;ER to Golgi vesicle-mediated transport;0.000191101918672719!GO:0017038;protein import;0.000192478508033875!GO:0008017;microtubule binding;0.000196957844211372!GO:0016564;transcription repressor activity;0.000196957844211372!GO:0030425;dendrite;0.000224289314322044!GO:0006613;cotranslational protein targeting to membrane;0.000230280399249792!GO:0030136;clathrin-coated vesicle;0.000233372559643363!GO:0009056;catabolic process;0.000247759694286098!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000271094760211687!GO:0043492;ATPase activity, coupled to movement of substances;0.00029407686339658!GO:0000159;protein phosphatase type 2A complex;0.000325418089865437!GO:0005516;calmodulin binding;0.000352074140892286!GO:0045786;negative regulation of progression through cell cycle;0.000355494549052147!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00036992572876882!GO:0043566;structure-specific DNA binding;0.000378034125011171!GO:0005798;Golgi-associated vesicle;0.000379039069580207!GO:0000902;cell morphogenesis;0.000402525999024358!GO:0032989;cellular structure morphogenesis;0.000402525999024358!GO:0006752;group transfer coenzyme metabolic process;0.000409701117600348!GO:0006259;DNA metabolic process;0.000419941586301597!GO:0008219;cell death;0.000435535982175715!GO:0016265;death;0.000435535982175715!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000459354639153368!GO:0051188;cofactor biosynthetic process;0.000464704158489939!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000556655290275959!GO:0019208;phosphatase regulator activity;0.000557898016090255!GO:0003714;transcription corepressor activity;0.000565339077806862!GO:0008601;protein phosphatase type 2A regulator activity;0.000602551189463998!GO:0005770;late endosome;0.000616925830344529!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000629196880873286!GO:0000151;ubiquitin ligase complex;0.000631689058846811!GO:0006323;DNA packaging;0.000671572523077535!GO:0008654;phospholipid biosynthetic process;0.000737716850017331!GO:0051028;mRNA transport;0.000813749683185746!GO:0003724;RNA helicase activity;0.00082075091934854!GO:0030133;transport vesicle;0.000844835573788786!GO:0012501;programmed cell death;0.000864699247183096!GO:0030027;lamellipodium;0.000867819344739995!GO:0006915;apoptosis;0.000995924348696206!GO:0030532;small nuclear ribonucleoprotein complex;0.00104428400109008!GO:0009117;nucleotide metabolic process;0.00118084851586607!GO:0003697;single-stranded DNA binding;0.00118908248769919!GO:0016070;RNA metabolic process;0.00135666973955163!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0014066881729022!GO:0043069;negative regulation of programmed cell death;0.00148024871490278!GO:0015980;energy derivation by oxidation of organic compounds;0.00149443182758924!GO:0016197;endosome transport;0.00152614070889147!GO:0005741;mitochondrial outer membrane;0.00155532899120284!GO:0016050;vesicle organization and biogenesis;0.00155900687569607!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00158823132692105!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00158823132692105!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00158823132692105!GO:0043066;negative regulation of apoptosis;0.00177934647222102!GO:0016301;kinase activity;0.0018197342771096!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00183629090319935!GO:0019888;protein phosphatase regulator activity;0.00186780010071612!GO:0031072;heat shock protein binding;0.00198963003186657!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00211984775380606!GO:0006612;protein targeting to membrane;0.00213141081773907!GO:0005048;signal sequence binding;0.00213254224498712!GO:0004674;protein serine/threonine kinase activity;0.00227170268530564!GO:0005839;proteasome core complex (sensu Eukaryota);0.00227376736215275!GO:0005813;centrosome;0.00235176938692437!GO:0046467;membrane lipid biosynthetic process;0.00240134179769489!GO:0004386;helicase activity;0.00243576049836808!GO:0022406;membrane docking;0.00246215894106979!GO:0048278;vesicle docking;0.00246215894106979!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.0024680527642728!GO:0004812;aminoacyl-tRNA ligase activity;0.0024680527642728!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.0024680527642728!GO:0048489;synaptic vesicle transport;0.00247764191137127!GO:0043038;amino acid activation;0.00253034041495744!GO:0006418;tRNA aminoacylation for protein translation;0.00253034041495744!GO:0043039;tRNA aminoacylation;0.00253034041495744!GO:0006606;protein import into nucleus;0.00267858757855412!GO:0030426;growth cone;0.0026846498779858!GO:0008026;ATP-dependent helicase activity;0.00277094791120537!GO:0065002;intracellular protein transport across a membrane;0.00278596680333211!GO:0030427;site of polarized growth;0.00293051657472508!GO:0006916;anti-apoptosis;0.00293974868291948!GO:0006891;intra-Golgi vesicle-mediated transport;0.0030251484860139!GO:0005793;ER-Golgi intermediate compartment;0.00307779793574269!GO:0051170;nuclear import;0.00312138258763281!GO:0005773;vacuole;0.0033680617378527!GO:0030118;clathrin coat;0.00338639985523734!GO:0009108;coenzyme biosynthetic process;0.00341164138563623!GO:0006414;translational elongation;0.00351977974328254!GO:0016791;phosphoric monoester hydrolase activity;0.0036384961425753!GO:0007017;microtubule-based process;0.00366607216554825!GO:0046930;pore complex;0.00369759438846388!GO:0007265;Ras protein signal transduction;0.00370399998034702!GO:0006607;NLS-bearing substrate import into nucleus;0.00377152221869274!GO:0006904;vesicle docking during exocytosis;0.00396910349239346!GO:0007019;microtubule depolymerization;0.00404861827999772!GO:0004721;phosphoprotein phosphatase activity;0.00404861827999772!GO:0051056;regulation of small GTPase mediated signal transduction;0.00414908363935953!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00430058814978633!GO:0004667;prostaglandin-D synthase activity;0.00430058814978633!GO:0050802;circadian sleep/wake cycle, sleep;0.00430058814978633!GO:0022410;circadian sleep/wake cycle process;0.00430058814978633!GO:0042749;regulation of circadian sleep/wake cycle;0.00430058814978633!GO:0045055;regulated secretory pathway;0.00430058814978633!GO:0031901;early endosome membrane;0.00444302194313651!GO:0019226;transmission of nerve impulse;0.00447911157725877!GO:0031968;organelle outer membrane;0.00449419360217068!GO:0051168;nuclear export;0.00453118277750905!GO:0008154;actin polymerization and/or depolymerization;0.00465803499416205!GO:0019867;outer membrane;0.00465803499416205!GO:0009966;regulation of signal transduction;0.00466785075718414!GO:0051087;chaperone binding;0.00469907979484669!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00494615779099795!GO:0001505;regulation of neurotransmitter levels;0.00502086721986931!GO:0005938;cell cortex;0.00508768849993576!GO:0006333;chromatin assembly or disassembly;0.00515995683396997!GO:0048487;beta-tubulin binding;0.00520603563787932!GO:0005815;microtubule organizing center;0.00532351517593853!GO:0051920;peroxiredoxin activity;0.00540355779986583!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00551562054374932!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00555945417332117!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00561201188251947!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00567984840647866!GO:0016311;dephosphorylation;0.00571127878918703!GO:0048468;cell development;0.00571387118480311!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00606396873589204!GO:0055083;monovalent inorganic anion homeostasis;0.00606396873589204!GO:0055064;chloride ion homeostasis;0.00606396873589204!GO:0030644;cellular chloride ion homeostasis;0.00606396873589204!GO:0003729;mRNA binding;0.00658723001680998!GO:0000314;organellar small ribosomal subunit;0.00662461891861357!GO:0005763;mitochondrial small ribosomal subunit;0.00662461891861357!GO:0006366;transcription from RNA polymerase II promoter;0.00682992272348971!GO:0006650;glycerophospholipid metabolic process;0.00691115379071342!GO:0051427;hormone receptor binding;0.00705257340634728!GO:0043623;cellular protein complex assembly;0.00726486701660176!GO:0006892;post-Golgi vesicle-mediated transport;0.00736252401983378!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00737595881532196!GO:0004298;threonine endopeptidase activity;0.00774221705896541!GO:0007269;neurotransmitter secretion;0.00774221705896541!GO:0019902;phosphatase binding;0.00776625679788121!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00783210825669992!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00783210825669992!GO:0008186;RNA-dependent ATPase activity;0.00783210825669992!GO:0005085;guanyl-nucleotide exchange factor activity;0.00783210825669992!GO:0046870;cadmium ion binding;0.00803240039082808!GO:0001726;ruffle;0.00816776688251462!GO:0031124;mRNA 3'-end processing;0.00823890678644305!GO:0005868;cytoplasmic dynein complex;0.00826837940445933!GO:0012506;vesicle membrane;0.00830989909218262!GO:0042254;ribosome biogenesis and assembly;0.00840125768421001!GO:0044448;cell cortex part;0.00847462283014489!GO:0003676;nucleic acid binding;0.00847780473198096!GO:0051726;regulation of cell cycle;0.00864401060613906!GO:0016568;chromatin modification;0.00867971260367251!GO:0007272;ensheathment of neurons;0.00895115846577046!GO:0008366;axon ensheathment;0.00895115846577046!GO:0043209;myelin sheath;0.00939357120130515!GO:0006643;membrane lipid metabolic process;0.00962172948772681!GO:0030867;rough endoplasmic reticulum membrane;0.00975379486886399!GO:0016859;cis-trans isomerase activity;0.010007449073952!GO:0003690;double-stranded DNA binding;0.0100440856304866!GO:0006470;protein amino acid dephosphorylation;0.0101802229403158!GO:0007049;cell cycle;0.010471132398105!GO:0033673;negative regulation of kinase activity;0.0104884071944931!GO:0006469;negative regulation of protein kinase activity;0.0104884071944931!GO:0031114;regulation of microtubule depolymerization;0.0106396741801236!GO:0007026;negative regulation of microtubule depolymerization;0.0106396741801236!GO:0009165;nucleotide biosynthetic process;0.0106396741801236!GO:0035257;nuclear hormone receptor binding;0.0110417622934253!GO:0006665;sphingolipid metabolic process;0.0112849744588762!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0113395307892077!GO:0008139;nuclear localization sequence binding;0.0116231712951159!GO:0050811;GABA receptor binding;0.0117642395728946!GO:0000074;regulation of progression through cell cycle;0.0118976356534637!GO:0006402;mRNA catabolic process;0.0121361514965278!GO:0048500;signal recognition particle;0.0122555773145348!GO:0001578;microtubule bundle formation;0.0124327349433571!GO:0005100;Rho GTPase activator activity;0.0125719311135342!GO:0003746;translation elongation factor activity;0.0128081610537964!GO:0008250;oligosaccharyl transferase complex;0.0132026393241619!GO:0030137;COPI-coated vesicle;0.0134135912590713!GO:0008286;insulin receptor signaling pathway;0.0134519624000263!GO:0050789;regulation of biological process;0.0135037894752697!GO:0050767;regulation of neurogenesis;0.0135245467668568!GO:0043021;ribonucleoprotein binding;0.013960849998077!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0140767546489214!GO:0051261;protein depolymerization;0.0141223002668323!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0149585745408993!GO:0009892;negative regulation of metabolic process;0.0151299688102546!GO:0008361;regulation of cell size;0.0152579928097962!GO:0005791;rough endoplasmic reticulum;0.0154072361893703!GO:0030258;lipid modification;0.0156220774060101!GO:0042578;phosphoric ester hydrolase activity;0.0156943925383959!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0157107454182204!GO:0035035;histone acetyltransferase binding;0.0158337794720593!GO:0005885;Arp2/3 protein complex;0.015838614859912!GO:0005762;mitochondrial large ribosomal subunit;0.0158951117473772!GO:0000315;organellar large ribosomal subunit;0.0158951117473772!GO:0051348;negative regulation of transferase activity;0.0160375561337133!GO:0000323;lytic vacuole;0.0165109923406965!GO:0005764;lysosome;0.0165109923406965!GO:0007005;mitochondrion organization and biogenesis;0.0167215335936105!GO:0003711;transcription elongation regulator activity;0.0176227386717523!GO:0008021;synaptic vesicle;0.0176227386717523!GO:0016363;nuclear matrix;0.0176355047621904!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0181964767464765!GO:0005869;dynactin complex;0.0182661330723848!GO:0030286;dynein complex;0.0184685030859682!GO:0004004;ATP-dependent RNA helicase activity;0.0186280498167116!GO:0044433;cytoplasmic vesicle part;0.0186280498167116!GO:0001666;response to hypoxia;0.0187585538405945!GO:0007243;protein kinase cascade;0.0191808372542594!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0192932018560403!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0199011728249067!GO:0045047;protein targeting to ER;0.0199011728249067!GO:0031123;RNA 3'-end processing;0.0201334199283511!GO:0019887;protein kinase regulator activity;0.0201401227640648!GO:0048167;regulation of synaptic plasticity;0.020564338403199!GO:0030384;phosphoinositide metabolic process;0.0208119710618375!GO:0019904;protein domain specific binding;0.020998034068315!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.021525261189444!GO:0006399;tRNA metabolic process;0.021736918075087!GO:0042026;protein refolding;0.0218478885512053!GO:0006818;hydrogen transport;0.0224350184227728!GO:0008312;7S RNA binding;0.0227714260754781!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0227714260754781!GO:0051252;regulation of RNA metabolic process;0.0228431952853965!GO:0001508;regulation of action potential;0.0237242214728031!GO:0016740;transferase activity;0.0238419894322975!GO:0030658;transport vesicle membrane;0.0240235487190472!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0241572305569557!GO:0006974;response to DNA damage stimulus;0.0242114299240321!GO:0017091;AU-rich element binding;0.0242859317898427!GO:0050779;RNA destabilization;0.0242859317898427!GO:0000289;poly(A) tail shortening;0.0242859317898427!GO:0051540;metal cluster binding;0.0244081602495947!GO:0051536;iron-sulfur cluster binding;0.0244081602495947!GO:0016049;cell growth;0.0251293676927901!GO:0030041;actin filament polymerization;0.0252152983174573!GO:0050839;cell adhesion molecule binding;0.0252982277733292!GO:0051539;4 iron, 4 sulfur cluster binding;0.0256837560253313!GO:0030030;cell projection organization and biogenesis;0.0257549668779959!GO:0048858;cell projection morphogenesis;0.0257549668779959!GO:0032990;cell part morphogenesis;0.0257549668779959!GO:0030742;GTP-dependent protein binding;0.0259870296191852!GO:0030175;filopodium;0.0265964237743397!GO:0042995;cell projection;0.0267575567905344!GO:0050794;regulation of cellular process;0.0270158904956064!GO:0015992;proton transport;0.0275067570095881!GO:0051276;chromosome organization and biogenesis;0.0289062810475748!GO:0030660;Golgi-associated vesicle membrane;0.0296288803449768!GO:0007034;vacuolar transport;0.030500762742032!GO:0007050;cell cycle arrest;0.0312998834506071!GO:0006091;generation of precursor metabolites and energy;0.031586792174988!GO:0030569;chymotrypsin inhibitor activity;0.0318537553927946!GO:0031371;ubiquitin conjugating enzyme complex;0.0321837929264853!GO:0030132;clathrin coat of coated pit;0.0321989088181277!GO:0008180;signalosome;0.0321989088181277!GO:0000209;protein polyubiquitination;0.0323339704966194!GO:0003725;double-stranded RNA binding;0.0325486434717349!GO:0050803;regulation of synapse structure and activity;0.0334800501933854!GO:0016272;prefoldin complex;0.0334800501933854!GO:0065004;protein-DNA complex assembly;0.0343522554393514!GO:0006672;ceramide metabolic process;0.0344264882809609!GO:0030663;COPI coated vesicle membrane;0.0344362994547172!GO:0030126;COPI vesicle coat;0.0344362994547172!GO:0004722;protein serine/threonine phosphatase activity;0.0366257403434563!GO:0035258;steroid hormone receptor binding;0.0368420917435091!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0368432053356997!GO:0004683;calmodulin-dependent protein kinase activity;0.0371742855890374!GO:0031109;microtubule polymerization or depolymerization;0.0372223177103814!GO:0019911;structural constituent of myelin sheath;0.03869169390828!GO:0015629;actin cytoskeleton;0.0403664239391169!GO:0006611;protein export from nucleus;0.040695804610091!GO:0043488;regulation of mRNA stability;0.040993664272737!GO:0043487;regulation of RNA stability;0.040993664272737!GO:0016615;malate dehydrogenase activity;0.0410546672661478!GO:0030659;cytoplasmic vesicle membrane;0.0416049657475618!GO:0042176;regulation of protein catabolic process;0.0420673642396154!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0430302411819572!GO:0019198;transmembrane receptor protein phosphatase activity;0.0430302411819572!GO:0001540;beta-amyloid binding;0.0430713656581842!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0432530615984724!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0435611034699022!GO:0033043;regulation of organelle organization and biogenesis;0.0435611034699022!GO:0004576;oligosaccharyl transferase activity;0.0437489632003404!GO:0000059;protein import into nucleus, docking;0.0439793781103838!GO:0046474;glycerophospholipid biosynthetic process;0.0439793781103838!GO:0005099;Ras GTPase activator activity;0.0455938534476364!GO:0046519;sphingoid metabolic process;0.045982640378335!GO:0019894;kinesin binding;0.0462257677810182!GO:0042802;identical protein binding;0.0469314133760906!GO:0019207;kinase regulator activity;0.0476289666940361!GO:0043086;negative regulation of catalytic activity;0.0477059221632014!GO:0003713;transcription coactivator activity;0.0480201897098622!GO:0046578;regulation of Ras protein signal transduction;0.0488396489114746!GO:0030127;COPII vesicle coat;0.0496374279534516!GO:0012507;ER to Golgi transport vesicle membrane;0.0496374279534516!GO:0006383;transcription from RNA polymerase III promoter;0.0497079477385746!GO:0043284;biopolymer biosynthetic process;0.0499345424645107
|sample_id=10177
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=caudate nucleus
|top_motifs=RFX1:3.97346696458;MYFfamily:3.24655563576;ATF2:3.16594569189;AHR_ARNT_ARNT2:3.02069781595;OCT4_SOX2{dimer}:2.99877970891;HOXA9_MEIS1:2.97308312613;RFX2..5_RFXANK_RFXAP:2.94381712358;REST:2.88630914548;NHLH1,2:2.85582946786;SOX2:2.85179855517;MED-1{core}:2.84859001684;ZFP161:2.73941879369;SOX5:2.73860447528;DBP:2.52365820895;PAX5:2.50191947854;PRRX1,2:2.49062350322;MTF1:2.47260688856;PRDM1:2.41585762123;HBP1_HMGB_SSRP1_UBTF:2.39321985258;XBP1:2.35852768356;NFIX:2.34688668548;MTE{core}:2.26372455519;EGR1..3:2.21675411849;GATA4:2.10217041472;GTF2I:2.09856574673;SOX{8,9,10}:2.08486872794;TLX2:2.0727737061;NKX3-2:2.05856036151;ZBTB6:2.05414812139;ARID5B:2.04279531067;CUX2:2.00629891789;RREB1:1.99138708696;STAT1,3:1.97707826111;FOXM1:1.9385610099;MZF1:1.92174639773;MAFB:1.91294340604;TGIF1:1.84194594901;GFI1B:1.81985787135;SOX17:1.81482050516;PAX1,9:1.7501983892;CDC5L:1.68431977831;SMAD1..7,9:1.67209721476;NKX6-1,2:1.66688675466;POU6F1:1.62418216517;HMX1:1.62247972279;T:1.61286239261;RBPJ:1.60834948173;VSX1,2:1.58298693442;JUN:1.56773093931;HIC1:1.55421513715;KLF4:1.51997180557;TFAP2B:1.51157561913;LMO2:1.48465994799;MAZ:1.46521253879;STAT2,4,6:1.4348508566;HOX{A4,D4}:1.42795675921;PAX6:1.40984339022;LEF1_TCF7_TCF7L1,2:1.37700274147;NFIL3:1.36375477831;NRF1:1.3013157805;BREu{core}:1.29845190983;NKX2-3_NKX2-5:1.28459770638;PATZ1:1.25258998429;NANOG:1.20048251291;AR:1.19656126347;LHX3,4:1.1835632771;PBX1:1.14821962337;FOXN1:1.12878099055;FOXP3:1.12104474319;ADNP_IRX_SIX_ZHX:1.11845212421;PDX1:1.09645490845;ESRRA:1.0729039102;ZNF384:0.995655661422;EP300:0.984009224491;CREB1:0.976851626259;CRX:0.969078223756;ALX1:0.962118992268;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.913600376753;ZBTB16:0.909929681921;MYBL2:0.841722475593;MYOD1:0.828804917512;SP1:0.805570188124;GTF2A1,2:0.791492256145;IKZF2:0.775867844713;POU5F1:0.761707591023;HMGA1,2:0.749857937371;RORA:0.740430458198;GFI1:0.711929263773;TFAP2{A,C}:0.682621677479;BPTF:0.676919842198;ZNF238:0.667563737779;SREBF1,2:0.652962612455;FOX{F1,F2,J1}:0.630354067355;ZIC1..3:0.600846710394;ZEB1:0.597710101956;TLX1..3_NFIC{dimer}:0.550788724768;ONECUT1,2:0.517580840772;PAX2:0.509607779693;ZNF143:0.481554825091;NR3C1:0.468033842153;PAX4:0.40852953243;ATF4:0.397693432819;MEF2{A,B,C,D}:0.360261900564;POU1F1:0.347900008616;FOXP1:0.341939850366;FOXD3:0.3348096632;TBX4,5:0.311054700239;HOX{A6,A7,B6,B7}:0.28753190486;IRF7:0.287291137539;SPZ1:0.280342761467;POU3F1..4:0.26138076428;ZNF423:0.227081347509;FOXO1,3,4:0.219226243509;EBF1:0.181290642794;TFDP1:0.17160014233;GZF1:0.151013532583;FOX{D1,D2}:0.135893147998;FOX{I1,J2}:0.0925931398258;ATF5_CREB3:0.0408119797529;HAND1,2:-0.0103099633523;CEBPA,B_DDIT3:-0.0121496299391;ATF6:-0.02018254328;NFY{A,B,C}:-0.081112118148;PAX8:-0.0882415673384;TOPORS:-0.174122486486;IKZF1:-0.200609890393;NFATC1..3:-0.223840157454;UFEwm:-0.246948939535;FOXL1:-0.26455489165;IRF1,2:-0.275446400215;YY1:-0.28816593255;NFE2:-0.312130879721;bHLH_family:-0.352725463098;CDX1,2,4:-0.356320971541;GCM1,2:-0.367033209541;GATA6:-0.372340430449;TBP:-0.433469718245;DMAP1_NCOR{1,2}_SMARC:-0.440342101283;NFE2L2:-0.452511363905;SPI1:-0.477148811656;SNAI1..3:-0.493593226703;NANOG{mouse}:-0.525867429756;EVI1:-0.543819703334;PITX1..3:-0.562678489617;NKX3-1:-0.573205893946;HIF1A:-0.579082420248;NFE2L1:-0.580204653657;TFCP2:-0.59511096662;HES1:-0.635653085552;FOXQ1:-0.63865938481;HSF1,2:-0.639235548326;NKX2-1,4:-0.680333240478;FOXA2:-0.709023713889;ETS1,2:-0.715529023948;RXR{A,B,G}:-0.724494034708;FOS_FOS{B,L1}_JUN{B,D}:-0.733169214003;SPIB:-0.749668631755;HNF4A_NR2F1,2:-0.752052366972;FOSL2:-0.766422043141;HNF1A:-0.796412312568;NR1H4:-0.804008693586;XCPE1{core}:-0.848433281932;TEAD1:-0.88584714327;BACH2:-0.88623690794;TEF:-0.893979780586;TFAP4:-0.977877628875;MYB:-1.02363376659;PAX3,7:-1.03462761219;HLF:-1.06249996415;NFKB1_REL_RELA:-1.07775858646;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08362975682;ALX4:-1.10775040028;RUNX1..3:-1.14278977741;TP53:-1.15120858168;AIRE:-1.18387003726;NR5A1,2:-1.23770548734;SRF:-1.23823690694;POU2F1..3:-1.26899796409;GLI1..3:-1.2764514915;ELF1,2,4:-1.30000273852;E2F1..5:-1.32660155888;ELK1,4_GABP{A,B1}:-1.46644495259;NKX2-2,8:-1.55922637955;ESR1:-1.56351981799;ZNF148:-1.57103162009;RXRA_VDR{dimer}:-1.60695359306;TAL1_TCF{3,4,12}:-1.71304408974;NR6A1:-1.87818359804;STAT5{A,B}:-1.94996207013;HOX{A5,B5}:-2.05360367771;EN1,2:-2.53738039254;PPARG:-2.69280659749
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10177-103C6;search_select_hide=table117:FF:10177-103C6
}}
}}

Latest revision as of 12:25, 3 June 2020

Name:caudate nucleus - adult, donor10196
Species:Human (Homo sapiens)
Library ID:CNhs13802
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecaudate nucleus
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005155
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13802 CAGE DRX008629 DRR009501
Accession ID Hg19

Library idBAMCTSS
CNhs13802 DRZ000926 DRZ002311
Accession ID Hg38

Library idBAMCTSS
CNhs13802 DRZ012276 DRZ013661
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.275
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.565
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
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C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13802

Jaspar motifP-value
MA0002.20.044
MA0003.10.322
MA0004.10.292
MA0006.10.244
MA0007.10.471
MA0009.10.495
MA0014.10.722
MA0017.10.0186
MA0018.20.0768
MA0019.10.799
MA0024.10.754
MA0025.10.313
MA0027.10.95
MA0028.10.0505
MA0029.10.0331
MA0030.10.689
MA0031.10.806
MA0035.20.0348
MA0038.10.0644
MA0039.20.143
MA0040.10.846
MA0041.10.181
MA0042.10.501
MA0043.10.497
MA0046.10.0193
MA0047.20.0866
MA0048.10.0777
MA0050.10.00794
MA0051.10.044
MA0052.10.467
MA0055.10.00101
MA0057.10.978
MA0058.10.235
MA0059.10.0884
MA0060.10.485
MA0061.10.00706
MA0062.27.56069e-4
MA0065.20.00309
MA0066.10.0819
MA0067.10.485
MA0068.10.95
MA0069.10.676
MA0070.10.346
MA0071.10.0123
MA0072.10.4
MA0073.10.397
MA0074.10.211
MA0076.10.102
MA0077.10.0975
MA0078.10.794
MA0079.20.77
MA0080.21.16233e-8
MA0081.10.0247
MA0083.10.137
MA0084.10.239
MA0087.10.229
MA0088.10.144
MA0090.10.285
MA0091.10.165
MA0092.10.365
MA0093.10.318
MA0099.23.06842e-14
MA0100.10.769
MA0101.10.00538
MA0102.20.306
MA0103.10.161
MA0104.20.485
MA0105.10.00226
MA0106.10.00993
MA0107.10.00624
MA0108.20.553
MA0111.10.573
MA0112.20.00212
MA0113.10.673
MA0114.10.00896
MA0115.10.926
MA0116.10.00817
MA0117.10.752
MA0119.10.0991
MA0122.10.546
MA0124.10.92
MA0125.10.127
MA0131.10.743
MA0135.10.0349
MA0136.19.31511e-12
MA0137.20.0138
MA0138.20.416
MA0139.10.45
MA0140.10.0156
MA0141.10.0127
MA0142.10.484
MA0143.10.155
MA0144.10.806
MA0145.10.176
MA0146.10.0055
MA0147.10.372
MA0148.10.0725
MA0149.10.0197
MA0150.15.78916e-4
MA0152.10.783
MA0153.10.605
MA0154.10.0477
MA0155.10.607
MA0156.12.30649e-8
MA0157.10.44
MA0159.10.0393
MA0160.10.0299
MA0162.10.137
MA0163.17.74292e-6
MA0164.10.687
MA0258.10.0315
MA0259.10.848



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13802

Novel motifP-value
10.0585
100.0364
1000.235
1010.409
1020.927
1030.0909
1040.0488
1050.111
1060.031
1070.125
1080.9
1090.00442
110.0107
1100.0736
1110.247
1120.615
1130.336
1140.232
1150.947
1160.0773
1170.0077
1180.17
1190.223
120.636
1200.183
1210.253
1220.74
1230.477
1240.0745
1250.524
1260.0565
1270.592
1280.236
1290.699
130.00148
1300.428
1310.0332
1320.648
1330.00311
1340.751
1350.0789
1360.00201
1370.899
1380.841
1390.399
140.763
1400.558
1410.607
1420.601
1430.0882
1440.958
1450.142
1460.4
1470.92
1480.348
1490.46
150.0727
1500.137
1510.548
1520.0571
1530.89
1540.569
1550.576
1560.648
1570.493
1580.505
1590.0762
160.0506
1600.26
1610.485
1620.724
1630.787
1640.00818
1650.221
1660.785
1670.636
1680.345
1690.00891
170.141
180.0956
190.188
20.878
200.0833
210.0531
220.157
230.604
240.0702
250.433
261.68759e-4
270.933
280.866
290.0121
30.0327
300.648
310.893
320.0081
330.0594
340.645
350.668
360.193
370.0253
380.364
390.387
40.83
400.0552
410.468
420.247
430.106
440.248
450.714
460.0535
470.0701
480.0437
490.18
50.621
500.259
510.457
520.592
530.953
540.397
550.555
560.486
570.221
580.373
590.0621
60.938
600.0667
610.123
620.279
630.173
640.151
650.278
660.131
670.339
680.18
690.419
70.0716
700.0303
710.0107
720.566
730.0243
740.463
750.0156
760.331
770.175
782.13406e-4
790.259
80.0699
800.932
810.516
820.592
830.0735
840.526
850.256
860.115
872.80306e-4
880.538
890.55
90.5
900.0967
910.526
920.557
930.628
940.161
950.0201
960.971
970.7
980.2
990.502



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13802


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001873 (caudate nucleus)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0005383 (caudate-putamen)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0005382 (dorsal striatum)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010164 (human caudate nucleus - adult donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010122 (future caudate nucleus)
UBERON:0010316 (germ layer / neural crest)

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