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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005118
|accession_numbers=CAGE;DRX007833;DRR008705;DRZ000130;DRZ001515;DRZ011480;DRZ012865
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003928,UBERON:0010317,UBERON:0002294,UBERON:0001173,UBERON:0002423
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003928,UBERON:0010317,UBERON:0002294,UBERON:0001173,UBERON:0002423
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.37!233.75!EHF;;chr11:65686802..65686818,+!p6@DRAP1!1.65!75.13!DRAP1;;chr1:201979743..201979762,+!p1@ELF3!1.64!42.51!ELF3;;chr11:65686732..65686756,+!p2@DRAP1!1.53!134.89!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!1.52!120.78!FOSL1;;chr1:201979703..201979721,+!p2@ELF3!1.52!31.81!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!47.99!FOXQ1;;chr8:102504651..102504683,+!p1@GRHL2!1.47!28.31!GRHL2;;chr11:34642656..34642667,+!p2@EHF!1.43!25.88!EHF;;chr11:65667846..65667868,-!p1@FOSL1!1.41!627.28!FOSL1;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.89!HOXB6;;chr1:209979467..209979494,-!p1@IRF6!1.37!25.43!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.36!22.11!ZBED2;;chr12:66218255..66218304,+!p3@HMGA2!1.33!53.92!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.30!557.27!HMGA1;;chr11:34645791..34645836,+!p3@EHF!1.30!19.14!EHF;;chr12:66218598..66218645,+!p2@HMGA2!1.27!80.34!HMGA2;;chr21:36421535..36421610,-!p2@RUNX1!1.26!60.12!RUNX1;;chr8:67525443..67525459,-!p2@MYBL1!1.26!25.70!MYBL1;;chr11:65668011..65668020,-!p3@FOSL1!1.26!17.16!FOSL1;;chr8:10588010..10588030,-!p1@SOX7!1.26!17.07!SOX7;;chr15:67418119..67418162,+!p5@SMAD3!1.24!18.15!SMAD3;;chr11:128457446..128457461,-!p4@ETS1!1.19!14.65!ETS1;;chr14:75988771..75988826,+!p1@BATF!1.18!18.78!BATF;;chr3:12330560..12330579,+!p1@PPARG!1.16!15.28!PPARG;;chr18:19749541..19749557,+!p1@GATA6!1.12!38.19!GATA6;;chr12:80084737..80084763,-!p3@PAWR!1.11!44.31!PAWR;;chr15:67418047..67418093,+!p4@SMAD3!1.11!15.01!SMAD3;;chr11:120107344..120107351,+!p1@POU2F3!1.10!14.11!POU2F3;;chr20:22564895..22564910,-!p1@FOXA2!1.10!11.50!FOXA2;;chr11:65686776..65686787,+!p9@DRAP1!1.09!13.30!DRAP1;;chr5:134369905..134369972,-!p1@PITX1!1.08!16.90!PITX1;;chr12:27485762..27485776,+!p3@ARNTL2!1.04!27.23!ARNTL2;;chr13:73633131..73633149,+!p1@KLF5!1.02!101.64!KLF5;;chr12:66218212..66218244,+!p5@HMGA2!1.00!13.21!HMGA2;;chr12:77459306..77459365,-!p1@E2F7!0.99!112.96!E2F7;;chr20:50159198..50159299,-!p1@NFATC2!0.99!12.94!NFATC2;;chr17:70117153..70117174,+!p1@SOX9!0.98!91.04!SOX9;;chr17:46675558..46675577,-!p2@HOXB6!0.98!8.45!HOXB6;;chr11:65554528..65554546,+!p1@OVOL1!0.96!8.09!OVOL1;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.55!HMGA2;;chr11:129245526..129245553,+!p1@BARX2!0.95!7.91!BARX2;;chr12:2986275..2986363,-!p1@FOXM1!0.94!79.26!FOXM1;;chr7:26191809..26191890,+!p1@NFE2L3!0.94!39.36!NFE2L3;;chr5:134369879..134369898,-!p2@PITX1!0.94!7.73!PITX1;;chr8:102504690..102504704,+!p3@GRHL2!0.94!7.73!GRHL2;;chr17:41277372..41277418,-!p1@BRCA1!0.92!27.59!BRCA1;;chr11:61520075..61520136,+!p1@C11orf9!0.92!16.09!C11orf9;;chr6:10415276..10415341,-!p2@TFAP2A!0.91!8.81!TFAP2A;;chr11:65554563..65554576,+!p2@OVOL1!0.91!7.10!OVOL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.90!64.08!PPP1R13L;;chr8:102504979..102505010,+!p2@GRHL2!0.90!6.92!GRHL2;;chr12:66218378..66218401,+!p6@HMGA2!0.88!10.51!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.56!TFAP2A;;chr3:168864315..168864339,-!p2@MECOM!0.87!10.87!MECOM;;chr17:41623692..41623715,-!p1@ETV4!0.86!27.86!ETV4;;chr18:19749386..19749404,+!p2@GATA6!0.86!9.08!GATA6;;chr12:66218836..66218888,+!p1@HMGA2!0.85!60.75!HMGA2;;chr15:96869255..96869291,+!p6@NR2F2!0.85!11.50!NR2F2;;chr15:67418177..67418204,+!p9@SMAD3!0.85!6.02!SMAD3;;chr14:38064429..38064486,-!p1@FOXA1!0.84!5.93!FOXA1;;chr1:209979411..209979433,-!p2@IRF6!0.84!5.84!IRF6;;chr20:22565185..22565223,-!p3@FOXA2!0.83!5.75!FOXA2;;chr6:10415484..10415508,-!p3@TFAP2A!0.82!5.66!TFAP2A;;chr6:34204672..34204692,+!p1@HMGA1!0.80!644.36!HMGA1;;chr12:80084303..80084332,-!p1@PAWR!0.79!33.43!PAWR;;chr12:66218003..66218018,+!p9@HMGA2!0.79!6.47!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.12!ZFY;;chr3:193853927..193853944,+!p1@HES1!0.78!181.53!HES1;;chr14:62162285..62162296,+!p3@HIF1A!0.78!28.67!HIF1A;;chr15:96869511..96869525,+!p16@NR2F2!0.78!5.66!NR2F2;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.03!KDM5D;;chr6:34524093..34524135,-!p1@SPDEF!0.78!5.03!SPDEF;;chr3:141087339..141087387,+!p2@ZBTB38!0.77!54.64!ZBTB38;;chr12:27485785..27485816,+!p1@ARNTL2!0.77!37.03!ARNTL2;;chr11:128392273..128392308,-!p2@ETS1!0.77!22.74!ETS1;;chr12:26277956..26277980,-!p1@BHLHE41!0.77!18.87!BHLHE41;;chr15:96874145..96874166,+!p7@NR2F2!0.77!9.98!NR2F2;;chr6:10412600..10412637,-!p1@TFAP2A!0.77!8.63!TFAP2A;;chr17:36105042..36105060,-!p1@HNF1B!0.77!4.94!HNF1B;;chr12:27485823..27485868,+!p2@ARNTL2!0.76!21.21!ARNTL2;;chr8:67525473..67525518,-!p1@MYBL1!0.76!11.50!MYBL1;;chr15:67357924..67357952,+!p2@SMAD3!0.74!33.34!SMAD3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.74!4.49!TFCP2L1;;chr2:238592039..238592054,+!p4@LRRFIP1!0.74!4.49!LRRFIP1;;chr12:80084279..80084293,-!p8@PAWR!0.73!7.64!PAWR;;chr12:66218573..66218596,+!p7@HMGA2!0.73!6.74!HMGA2;;chr4:149363475..149363492,-!p2@NR3C2!0.73!4.40!NR3C2;;chr17:36105074..36105086,-!p2@HNF1B!0.73!4.31!HNF1B;;chr7:27153454..27153469,-!p2@HOXA3!0.73!4.31!HOXA3;;chr15:96874012..96874042,+!p2@NR2F2!0.72!43.23!NR2F2;;chr6:34524025..34524045,-!p3@SPDEF!0.72!4.22!SPDEF;;chr3:141087393..141087426,+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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aHuCCT1.CNhs10750.10432-106D9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aHuCCT1.CNhs10750.10432-106D9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aHuCCT1.CNhs10750.10432-106D9.hg38.nobarcode.bam
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|id=FF:10432-106D9
|id=FF:10432-106D9
|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0103911
|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0103911
|is_obsolete=
|is_obsolete=
|library_id=CNhs10750
|library_id_phase_based=2:CNhs10750
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10432
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10432
|name=bile duct carcinoma cell line:HuCCT1
|name=bile duct carcinoma cell line:HuCCT1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
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|profile_hcage=CNhs10750,LSID692,release008,COMPLETED
|profile_rnaseq=,,,
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 62: Line 78:
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|sample_cell_line=HuCCT1
Line 83: Line 100:
|top_motifs=ZEB1:1.94414767736;SNAI1..3:1.84274580312;TBX4,5:1.52011256842;PPARG:1.3852545871;PITX1..3:1.32349339141;bHLH_family:1.29151362753;FOXA2:1.24138866202;E2F1..5:1.21053883561;ELK1,4_GABP{A,B1}:1.13057229559;MYB:1.12604259407;FOX{I1,J2}:1.0538006006;FOXD3:1.01373558874;ADNP_IRX_SIX_ZHX:0.945583154196;PAX8:0.935500684032;TFDP1:0.91783576886;TEAD1:0.910022058835;LEF1_TCF7_TCF7L1,2:0.890039038454;ARID5B:0.851716648914;NFY{A,B,C}:0.847396520552;MYOD1:0.812162514367;FOXQ1:0.654012018128;XCPE1{core}:0.649138417058;ZNF148:0.640732956986;NKX3-2:0.623782386287;ESRRA:0.593242503937;AHR_ARNT_ARNT2:0.537396943137;NKX2-2,8:0.473731768301;ELF1,2,4:0.458748155394;FOS_FOS{B,L1}_JUN{B,D}:0.451592389127;BACH2:0.446951437535;POU1F1:0.4290993361;CDC5L:0.424143341526;FOXP1:0.421983627735;VSX1,2:0.413258993819;ONECUT1,2:0.393824800496;HNF1A:0.388562131887;POU2F1..3:0.375623723151;CRX:0.357420352996;NKX2-3_NKX2-5:0.350083719939;OCT4_SOX2{dimer}:0.343058504901;SP1:0.339351773149;ZNF143:0.330542769535;NFE2:0.291407831027;IRF7:0.251794940157;HMGA1,2:0.236405127133;NR6A1:0.228642111694;NRF1:0.213832030588;LHX3,4:0.204040179334;SOX{8,9,10}:0.202612024118;LMO2:0.202597638235;BREu{core}:0.197682067802;HES1:0.188659586083;FOXN1:0.177305753313;FOXM1:0.111200547589;PAX5:0.101249339159;EN1,2:0.10020825534;NFKB1_REL_RELA:0.0977401362549;TFCP2:0.0918904861631;NR1H4:0.0845048930236;FOSL2:0.0839816727418;SOX2:0.0670730164378;POU5F1:0.0457315092244;RBPJ:0.0444608276227;ATF5_CREB3:0.0383709139343;MTF1:0.0295944811179;BPTF:0.0248572814224;IKZF1:0.01932829163;YY1:0.0187833154373;GATA6:0.0176717157234;HAND1,2:0.00409667268333;TEF:-0.00621293810979;PAX2:-0.0157109241114;EP300:-0.015899889166;HNF4A_NR2F1,2:-0.0172711529513;GFI1:-0.0199380989269;STAT5{A,B}:-0.0324361885765;HOX{A6,A7,B6,B7}:-0.0377249289065;HOX{A5,B5}:-0.0394633878003;HLF:-0.0529299431877;GLI1..3:-0.0538241729968;IRF1,2:-0.0882110904402;GCM1,2:-0.0953635315672;NKX6-1,2:-0.0974022395853;NFATC1..3:-0.108854587635;FOX{D1,D2}:-0.119149069968;HBP1_HMGB_SSRP1_UBTF:-0.131945947276;PDX1:-0.135684503106;MAZ:-0.137527474106;NANOG:-0.144918672763;ZFP161:-0.145158427668;SOX17:-0.154526933526;TFAP2B:-0.162685897746;ATF4:-0.170796003513;TP53:-0.193012449662;FOXO1,3,4:-0.193494369355;GTF2A1,2:-0.197491092856;TLX1..3_NFIC{dimer}:-0.199787761644;POU3F1..4:-0.216636547702;SPIB:-0.223847925497;ETS1,2:-0.233696248032;CEBPA,B_DDIT3:-0.23706368926;DBP:-0.240721445612;STAT2,4,6:-0.241340767392;MEF2{A,B,C,D}:-0.254146598181;HMX1:-0.28125050337;TBP:-0.283360935849;TFAP2{A,C}:-0.289998274544;ZBTB16:-0.293151423704;HIC1:-0.302441377118;ATF2:-0.303376644306;NFE2L2:-0.306547857752;PRDM1:-0.307223913597;MTE{core}:-0.312376431451;RFX1:-0.31387344055;NKX2-1,4:-0.314512010857;MED-1{core}:-0.314712202287;RUNX1..3:-0.333560515439;NR5A1,2:-0.348172367775;ZBTB6:-0.35673714233;CUX2:-0.362238193108;EGR1..3:-0.362671541886;XBP1:-0.393041753757;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.395277301106;JUN:-0.408190068047;FOXL1:-0.409782184425;TAL1_TCF{3,4,12}:-0.41144193298;SPI1:-0.413261737438;GZF1:-0.416493974096;RORA:-0.419501888889;NHLH1,2:-0.420253032418;ALX4:-0.424828270784;GFI1B:-0.462119287451;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.483870911719;EBF1:-0.487713537761;NR3C1:-0.487981095068;SRF:-0.489531929398;ZNF423:-0.491072322689;TOPORS:-0.509794113764;PBX1:-0.514621182698;IKZF2:-0.515109785301;AIRE:-0.521409513749;HSF1,2:-0.5230025728;EVI1:-0.529946516569;ZIC1..3:-0.530412144191;AR:-0.533373046885;RREB1:-0.533532145853;UFEwm:-0.542156022859;KLF4:-0.544816528842;RFX2..5_RFXANK_RFXAP:-0.54829529235;PRRX1,2:-0.549028151124;CREB1:-0.578603194853;NKX3-1:-0.593895405087;MYBL2:-0.609370752571;REST:-0.611496079019;ALX1:-0.628254348203;HIF1A:-0.629827533326;NFE2L1:-0.631549143252;DMAP1_NCOR{1,2}_SMARC:-0.63157242737;GTF2I:-0.6325784025;PATZ1:-0.65005575693;TLX2:-0.651452931728;HOXA9_MEIS1:-0.655861875101;NFIL3:-0.665704547193;MZF1:-0.668186150437;FOX{F1,F2,J1}:-0.687200653578;SREBF1,2:-0.736236624144;POU6F1:-0.746046624442;ATF6:-0.759751316301;CDX1,2,4:-0.763402487785;SPZ1:-0.764654691324;RXRA_VDR{dimer}:-0.781677345357;PAX3,7:-0.793520344212;PAX6:-0.80658610675;FOXP3:-0.819616115601;PAX4:-0.822177565515;ESR1:-0.827064041292;NFIX:-0.884562132034;MAFB:-0.898483187505;ZNF238:-0.903612464547;HOX{A4,D4}:-0.938655238831;SOX5:-0.956266913577;GATA4:-0.967426437992;TGIF1:-0.976201827329;MYFfamily:-1.00152335522;PAX1,9:-1.14467678765;T:-1.15114214774;NANOG{mouse}:-1.15175271819;ZNF384:-1.15215720502;RXR{A,B,G}:-1.19764577535;TFAP4:-1.20633217133;SMAD1..7,9:-1.49934560507;STAT1,3:-1.61188029896
|top_motifs=ZEB1:1.94414767736;SNAI1..3:1.84274580312;TBX4,5:1.52011256842;PPARG:1.3852545871;PITX1..3:1.32349339141;bHLH_family:1.29151362753;FOXA2:1.24138866202;E2F1..5:1.21053883561;ELK1,4_GABP{A,B1}:1.13057229559;MYB:1.12604259407;FOX{I1,J2}:1.0538006006;FOXD3:1.01373558874;ADNP_IRX_SIX_ZHX:0.945583154196;PAX8:0.935500684032;TFDP1:0.91783576886;TEAD1:0.910022058835;LEF1_TCF7_TCF7L1,2:0.890039038454;ARID5B:0.851716648914;NFY{A,B,C}:0.847396520552;MYOD1:0.812162514367;FOXQ1:0.654012018128;XCPE1{core}:0.649138417058;ZNF148:0.640732956986;NKX3-2:0.623782386287;ESRRA:0.593242503937;AHR_ARNT_ARNT2:0.537396943137;NKX2-2,8:0.473731768301;ELF1,2,4:0.458748155394;FOS_FOS{B,L1}_JUN{B,D}:0.451592389127;BACH2:0.446951437535;POU1F1:0.4290993361;CDC5L:0.424143341526;FOXP1:0.421983627735;VSX1,2:0.413258993819;ONECUT1,2:0.393824800496;HNF1A:0.388562131887;POU2F1..3:0.375623723151;CRX:0.357420352996;NKX2-3_NKX2-5:0.350083719939;OCT4_SOX2{dimer}:0.343058504901;SP1:0.339351773149;ZNF143:0.330542769535;NFE2:0.291407831027;IRF7:0.251794940157;HMGA1,2:0.236405127133;NR6A1:0.228642111694;NRF1:0.213832030588;LHX3,4:0.204040179334;SOX{8,9,10}:0.202612024118;LMO2:0.202597638235;BREu{core}:0.197682067802;HES1:0.188659586083;FOXN1:0.177305753313;FOXM1:0.111200547589;PAX5:0.101249339159;EN1,2:0.10020825534;NFKB1_REL_RELA:0.0977401362549;TFCP2:0.0918904861631;NR1H4:0.0845048930236;FOSL2:0.0839816727418;SOX2:0.0670730164378;POU5F1:0.0457315092244;RBPJ:0.0444608276227;ATF5_CREB3:0.0383709139343;MTF1:0.0295944811179;BPTF:0.0248572814224;IKZF1:0.01932829163;YY1:0.0187833154373;GATA6:0.0176717157234;HAND1,2:0.00409667268333;TEF:-0.00621293810979;PAX2:-0.0157109241114;EP300:-0.015899889166;HNF4A_NR2F1,2:-0.0172711529513;GFI1:-0.0199380989269;STAT5{A,B}:-0.0324361885765;HOX{A6,A7,B6,B7}:-0.0377249289065;HOX{A5,B5}:-0.0394633878003;HLF:-0.0529299431877;GLI1..3:-0.0538241729968;IRF1,2:-0.0882110904402;GCM1,2:-0.0953635315672;NKX6-1,2:-0.0974022395853;NFATC1..3:-0.108854587635;FOX{D1,D2}:-0.119149069968;HBP1_HMGB_SSRP1_UBTF:-0.131945947276;PDX1:-0.135684503106;MAZ:-0.137527474106;NANOG:-0.144918672763;ZFP161:-0.145158427668;SOX17:-0.154526933526;TFAP2B:-0.162685897746;ATF4:-0.170796003513;TP53:-0.193012449662;FOXO1,3,4:-0.193494369355;GTF2A1,2:-0.197491092856;TLX1..3_NFIC{dimer}:-0.199787761644;POU3F1..4:-0.216636547702;SPIB:-0.223847925497;ETS1,2:-0.233696248032;CEBPA,B_DDIT3:-0.23706368926;DBP:-0.240721445612;STAT2,4,6:-0.241340767392;MEF2{A,B,C,D}:-0.254146598181;HMX1:-0.28125050337;TBP:-0.283360935849;TFAP2{A,C}:-0.289998274544;ZBTB16:-0.293151423704;HIC1:-0.302441377118;ATF2:-0.303376644306;NFE2L2:-0.306547857752;PRDM1:-0.307223913597;MTE{core}:-0.312376431451;RFX1:-0.31387344055;NKX2-1,4:-0.314512010857;MED-1{core}:-0.314712202287;RUNX1..3:-0.333560515439;NR5A1,2:-0.348172367775;ZBTB6:-0.35673714233;CUX2:-0.362238193108;EGR1..3:-0.362671541886;XBP1:-0.393041753757;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.395277301106;JUN:-0.408190068047;FOXL1:-0.409782184425;TAL1_TCF{3,4,12}:-0.41144193298;SPI1:-0.413261737438;GZF1:-0.416493974096;RORA:-0.419501888889;NHLH1,2:-0.420253032418;ALX4:-0.424828270784;GFI1B:-0.462119287451;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.483870911719;EBF1:-0.487713537761;NR3C1:-0.487981095068;SRF:-0.489531929398;ZNF423:-0.491072322689;TOPORS:-0.509794113764;PBX1:-0.514621182698;IKZF2:-0.515109785301;AIRE:-0.521409513749;HSF1,2:-0.5230025728;EVI1:-0.529946516569;ZIC1..3:-0.530412144191;AR:-0.533373046885;RREB1:-0.533532145853;UFEwm:-0.542156022859;KLF4:-0.544816528842;RFX2..5_RFXANK_RFXAP:-0.54829529235;PRRX1,2:-0.549028151124;CREB1:-0.578603194853;NKX3-1:-0.593895405087;MYBL2:-0.609370752571;REST:-0.611496079019;ALX1:-0.628254348203;HIF1A:-0.629827533326;NFE2L1:-0.631549143252;DMAP1_NCOR{1,2}_SMARC:-0.63157242737;GTF2I:-0.6325784025;PATZ1:-0.65005575693;TLX2:-0.651452931728;HOXA9_MEIS1:-0.655861875101;NFIL3:-0.665704547193;MZF1:-0.668186150437;FOX{F1,F2,J1}:-0.687200653578;SREBF1,2:-0.736236624144;POU6F1:-0.746046624442;ATF6:-0.759751316301;CDX1,2,4:-0.763402487785;SPZ1:-0.764654691324;RXRA_VDR{dimer}:-0.781677345357;PAX3,7:-0.793520344212;PAX6:-0.80658610675;FOXP3:-0.819616115601;PAX4:-0.822177565515;ESR1:-0.827064041292;NFIX:-0.884562132034;MAFB:-0.898483187505;ZNF238:-0.903612464547;HOX{A4,D4}:-0.938655238831;SOX5:-0.956266913577;GATA4:-0.967426437992;TGIF1:-0.976201827329;MYFfamily:-1.00152335522;PAX1,9:-1.14467678765;T:-1.15114214774;NANOG{mouse}:-1.15175271819;ZNF384:-1.15215720502;RXR{A,B,G}:-1.19764577535;TFAP4:-1.20633217133;SMAD1..7,9:-1.49934560507;STAT1,3:-1.61188029896
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10432-106D9;search_select_hide=table117:FF:10432-106D9
}}
}}

Latest revision as of 14:01, 3 June 2020

Name:bile duct carcinoma cell line:HuCCT1
Species:Human (Homo sapiens)
Library ID:CNhs10750
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebile duct
dev stage56 year old adult
sexunknown
age56
cell typeduct cell, bile duct
cell lineHuCCT1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005118
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10750 CAGE DRX007833 DRR008705
Accession ID Hg19

Library idBAMCTSS
CNhs10750 DRZ000130 DRZ001515
Accession ID Hg38

Library idBAMCTSS
CNhs10750 DRZ011480 DRZ012865
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0312
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.549
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.447
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0202
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.02
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0691
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0.0187
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.196
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.263
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.474
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.059
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0148
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0718
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00541
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.506
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0374
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0374
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10750

Jaspar motifP-value
MA0002.20.302
MA0003.10.396
MA0004.10.889
MA0006.10.485
MA0007.10.488
MA0009.10.179
MA0014.10.0352
MA0017.10.676
MA0018.20.362
MA0019.10.166
MA0024.11.01958e-4
MA0025.10.698
MA0027.10.37
MA0028.11.57796e-6
MA0029.10.317
MA0030.10.13
MA0031.10.512
MA0035.20.00962
MA0038.10.134
MA0039.20.00314
MA0040.10.418
MA0041.10.929
MA0042.10.535
MA0043.10.93
MA0046.10.00122
MA0047.20.042
MA0048.10.35
MA0050.10.0784
MA0051.16.79664e-4
MA0052.10.478
MA0055.10.0035
MA0057.10.51
MA0058.10.673
MA0059.10.58
MA0060.16.95478e-5
MA0061.10.613
MA0062.24.58742e-6
MA0065.20.784
MA0066.10.588
MA0067.10.0928
MA0068.10.0334
MA0069.10.79
MA0070.10.522
MA0071.10.23
MA0072.10.747
MA0073.10.46
MA0074.10.635
MA0076.11.96464e-4
MA0077.10.687
MA0078.10.646
MA0079.20.804
MA0080.20.188
MA0081.10.622
MA0083.10.0366
MA0084.10.152
MA0087.10.898
MA0088.10.631
MA0090.10.00175
MA0091.10.00135
MA0092.10.307
MA0093.10.83
MA0099.22.71604e-11
MA0100.10.335
MA0101.10.628
MA0102.20.896
MA0103.13.64938e-9
MA0104.20.148
MA0105.10.0186
MA0106.10.806
MA0107.10.529
MA0108.20.429
MA0111.10.808
MA0112.20.512
MA0113.10.0346
MA0114.10.282
MA0115.10.251
MA0116.10.208
MA0117.10.311
MA0119.10.904
MA0122.10.727
MA0124.10.462
MA0125.10.466
MA0131.10.262
MA0135.10.394
MA0136.10.44
MA0137.20.321
MA0138.20.0246
MA0139.10.374
MA0140.10.117
MA0141.10.413
MA0142.10.748
MA0143.10.173
MA0144.10.644
MA0145.10.661
MA0146.10.374
MA0147.10.0592
MA0148.10.0667
MA0149.10.0943
MA0150.10.168
MA0152.10.181
MA0153.13.56894e-4
MA0154.10.0851
MA0155.10.0122
MA0156.10.0172
MA0157.10.472
MA0159.10.505
MA0160.10.709
MA0162.10.973
MA0163.10.0124
MA0164.10.753
MA0258.10.0418
MA0259.10.615



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10750

Novel motifP-value
10.688
100.77
1000.306
1010.167
1020.641
1030.52
1040.791
1050.4
1060.912
1070.638
1080.922
1090.117
110.0887
1100.705
1110.802
1120.0492
1130.0269
1140.307
1150.236
1160.147
1170.694
1180.976
1190.232
120.595
1200.549
1210.139
1220.215
1230.771
1240.365
1250.309
1260.683
1270.996
1280.00119
1290.365
130.0545
1300.118
1310.41
1320.9
1330.0588
1340.468
1350.0301
1360.0151
1370.27
1380.884
1390.0622
140.77
1400.646
1410.0717
1420.787
1430.0846
1440.159
1450.395
1460.606
1470.781
1480.993
1490.149
150.76
1500.537
1510.743
1520.618
1530.291
1540.769
1550.276
1560.186
1570.453
1580.357
1590.58
160.695
1600.585
1610.935
1620.203
1630.611
1640.722
1650.37
1660.49
1670.965
1680.29
1690.986
170.614
180.188
190.2
20.629
200.0779
210.253
220.154
230.0849
240.415
250.852
260.36
270.637
280.487
290.3
30.23
300.609
310.194
321.84694e-4
330.12
340.165
350.106
360.546
370.461
380.985
390.57
40.918
400.452
410.213
420.91
430.161
440.441
450.974
460.273
470.992
480.589
490.178
50.33
500.176
510.561
520.75
530.525
540.409
550.782
560.713
570.833
580.759
590.33
60.493
600.877
610.293
620.179
630.222
640.303
650.184
660.0266
670.881
680.00293
690.438
70.492
700.142
710.533
720.231
730.585
740.898
750.531
760.514
770.745
780.106
790.0013
80.391
800.253
810.0242
823.57767e-5
830.164
840.576
850.0057
860.717
870.0119
880.523
890.255
90.127
900.477
910.122
920.088
930.759
940.0963
950.283
960.122
970.621
980.343
990.646



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10750


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002394 (bile duct)
0000058 (duct)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0002294 (biliary system)
0001173 (biliary tree)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103910 (bile duct cancer cell line sample)
0103911 (HuCCT-1 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

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