FF:10439-106E7: Difference between revisions

Latest revision as of 14:02, 3 June 2020

Name:	prostate cancer cell line:PC-3
Species:	Human (Homo sapiens)
Library ID:	CNhs11243
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	prostate
dev stage	62 year old adult
sex	male
age	62
cell type	unclassifiable
cell line	PC-3
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005252

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11243		CAGE		DRX007988		DRR008860

Accession ID Hg19

Library id		BAM		CTSS
CNhs11243		DRZ000285		DRZ001670

Accession ID Hg38

Library id		BAM		CTSS
CNhs11243		DRZ011635		DRZ013020

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.181
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.485
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0458
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0458
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.063
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.202
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0458
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0.0458
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0872
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.123
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.213
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.301
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.185
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.16
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	1
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.405
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0276
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0872
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.00329
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11243

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00293
MA0003.1	MA0003.1	0.3
MA0004.1	MA0004.1	0.376
MA0006.1	MA0006.1	0.67
MA0007.1	MA0007.1	0.773
MA0009.1	MA0009.1	0.307
MA0014.1	MA0014.1	0.0189
MA0017.1	MA0017.1	0.227
MA0018.2	MA0018.2	0.00256
MA0019.1	MA0019.1	0.432
MA0024.1	MA0024.1	2.27227e-4
MA0025.1	MA0025.1	0.27
MA0027.1	MA0027.1	0.87
MA0028.1	MA0028.1	0.0112
MA0029.1	MA0029.1	0.458
MA0030.1	MA0030.1	0.229
MA0031.1	MA0031.1	0.00518
MA0035.2	MA0035.2	0.525
MA0038.1	MA0038.1	0.0504
MA0039.2	MA0039.2	0.00113
MA0040.1	MA0040.1	0.877
MA0041.1	MA0041.1	0.54
MA0042.1	MA0042.1	0.742
MA0043.1	MA0043.1	0.0033
MA0046.1	MA0046.1	0.143
MA0047.2	MA0047.2	0.0203
MA0048.1	MA0048.1	0.2
MA0050.1	MA0050.1	0.00212
MA0051.1	MA0051.1	0.117
MA0052.1	MA0052.1	0.0286
MA0055.1	MA0055.1	9.64394e-4
MA0057.1	MA0057.1	0.386
MA0058.1	MA0058.1	0.0734
MA0059.1	MA0059.1	0.244
MA0060.1	MA0060.1	4.51387e-12
MA0061.1	MA0061.1	0.00407
MA0062.2	MA0062.2	0.101
MA0065.2	MA0065.2	0.357
MA0066.1	MA0066.1	0.092
MA0067.1	MA0067.1	0.0137
MA0068.1	MA0068.1	0.891
MA0069.1	MA0069.1	0.964
MA0070.1	MA0070.1	0.5
MA0071.1	MA0071.1	0.375
MA0072.1	MA0072.1	0.316
MA0073.1	MA0073.1	0.821
MA0074.1	MA0074.1	0.702
MA0076.1	MA0076.1	0.0542
MA0077.1	MA0077.1	0.983
MA0078.1	MA0078.1	0.739
MA0079.2	MA0079.2	0.973
MA0080.2	MA0080.2	7.52368e-9
MA0081.1	MA0081.1	0.149
MA0083.1	MA0083.1	0.167
MA0084.1	MA0084.1	0.554
MA0087.1	MA0087.1	0.252
MA0088.1	MA0088.1	0.45
MA0090.1	MA0090.1	0.223
MA0091.1	MA0091.1	2.2821e-5
MA0092.1	MA0092.1	0.0994
MA0093.1	MA0093.1	0.336
MA0099.2	MA0099.2	0.484
MA0100.1	MA0100.1	0.4
MA0101.1	MA0101.1	0.14
MA0102.2	MA0102.2	0.00273
MA0103.1	MA0103.1	5.58221e-5
MA0104.2	MA0104.2	0.963
MA0105.1	MA0105.1	0.00161
MA0106.1	MA0106.1	0.597
MA0107.1	MA0107.1	0.03
MA0108.2	MA0108.2	0.838
MA0111.1	MA0111.1	0.384
MA0112.2	MA0112.2	0.0244
MA0113.1	MA0113.1	0.191
MA0114.1	MA0114.1	0.977
MA0115.1	MA0115.1	0.878
MA0116.1	MA0116.1	0.0766
MA0117.1	MA0117.1	0.0284
MA0119.1	MA0119.1	0.933
MA0122.1	MA0122.1	0.644
MA0124.1	MA0124.1	0.432
MA0125.1	MA0125.1	0.424
MA0131.1	MA0131.1	0.297
MA0135.1	MA0135.1	0.114
MA0136.1	MA0136.1	3.24242e-5
MA0137.2	MA0137.2	0.0826
MA0138.2	MA0138.2	0.142
MA0139.1	MA0139.1	0.901
MA0140.1	MA0140.1	0.323
MA0141.1	MA0141.1	0.119
MA0142.1	MA0142.1	0.122
MA0143.1	MA0143.1	0.16
MA0144.1	MA0144.1	0.47
MA0145.1	MA0145.1	0.596
MA0146.1	MA0146.1	0.353
MA0147.1	MA0147.1	0.745
MA0148.1	MA0148.1	0.00378
MA0149.1	MA0149.1	0.141
MA0150.1	MA0150.1	0.212
MA0152.1	MA0152.1	0.639
MA0153.1	MA0153.1	0.15
MA0154.1	MA0154.1	0.0136
MA0155.1	MA0155.1	0.116
MA0156.1	MA0156.1	0.0114
MA0157.1	MA0157.1	0.06
MA0159.1	MA0159.1	0.601
MA0160.1	MA0160.1	0.166
MA0162.1	MA0162.1	0.891
MA0163.1	MA0163.1	0.00265
MA0164.1	MA0164.1	0.752
MA0258.1	MA0258.1	0.0067
MA0259.1	MA0259.1	0.0681

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11243

Novel motif	Logo	P-value
1	1	0.397
10	10	0.74
100	100	0.288
101	101	0.491
102	102	0.662
103	103	0.227
104	104	0.689
105	105	0.0762
106	106	0.00245
107	107	0.836
108	108	0.734
109	109	0.896
11	11	0.191
110	110	0.672
111	111	0.364
112	112	0.00463
113	113	0.151
114	114	0.171
115	115	0.423
116	116	0.238
117	117	0.947
118	118	0.139
119	119	0.363
12	12	0.488
120	120	0.938
121	121	0.832
122	122	0.961
123	123	0.518
124	124	0.811
125	125	0.637
126	126	0.81
127	127	0.817
128	128	0.0893
129	129	0.837
13	13	0.484
130	130	0.196
131	131	0.172
132	132	0.176
133	133	0.226
134	134	0.435
135	135	0.00833
136	136	0.374
137	137	0.414
138	138	0.364
139	139	0.181
14	14	0.185
140	140	0.00668
141	141	0.902
142	142	0.41
143	143	0.796
144	144	0.131
145	145	0.762
146	146	0.247
147	147	0.6
148	148	0.059
149	149	0.0177
15	15	0.825
150	150	0.987
151	151	0.401
152	152	0.379
153	153	0.35
154	154	0.951
155	155	0.944
156	156	0.691
157	157	0.859
158	158	0.123
159	159	0.455
16	16	0.528
160	160	0.41
161	161	0.958
162	162	0.995
163	163	0.272
164	164	0.0871
165	165	0.848
166	166	0.932
167	167	0.16
168	168	0.278
169	169	0.468
17	17	0.702
18	18	0.0363
19	19	0.0485
2	2	0.16
20	20	0.0859
21	21	0.798
22	22	0.0611
23	23	0.277
24	24	0.627
25	25	0.523
26	26	0.885
27	27	0.296
28	28	0.891
29	29	0.834
3	3	0.394
30	30	0.934
31	31	0.786
32	32	0.0207
33	33	0.486
34	34	0.0769
35	35	0.118
36	36	0.945
37	37	0.312
38	38	0.976
39	39	0.707
4	4	0.348
40	40	0.449
41	41	0.0926
42	42	0.884
43	43	0.213
44	44	0.194
45	45	0.977
46	46	0.157
47	47	0.983
48	48	0.566
49	49	0.47
5	5	0.267
50	50	0.768
51	51	0.247
52	52	0.266
53	53	0.573
54	54	0.296
55	55	0.631
56	56	0.814
57	57	0.447
58	58	0.172
59	59	0.0352
6	6	0.852
60	60	0.0372
61	61	0.621
62	62	0.0575
63	63	0.807
64	64	0.282
65	65	0.394
66	66	2.70895e-4
67	67	0.888
68	68	0.557
69	69	0.624
7	7	0.615
70	70	0.176
71	71	0.493
72	72	0.192
73	73	0.453
74	74	0.456
75	75	0.868
76	76	0.857
77	77	0.406
78	78	0.704
79	79	6.65109e-4
8	8	0.246
80	80	0.0323
81	81	0.11
82	82	0.0371
83	83	0.298
84	84	0.647
85	85	0.00658
86	86	0.383
87	87	0.869
88	88	0.761
89	89	0.276
9	9	0.0139
90	90	0.55
91	91	0.166
92	92	0.0935
93	93	0.623
94	94	0.092
95	95	0.411
96	96	0.0232
97	97	0.521
98	98	0.585
99	99	0.192

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11243

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101061 PC-3 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101019 (prostate gland cell line sample)
0101033 (prostate cancer cell line sample)
0101061 (PC-3 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0009847 (prostate field)
UBERON:0003353 (epithelium of hindgut)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005252
+|accession_numbers=CAGE;DRX007988;DRR008860;DRZ000285;DRZ001670;DRZ011635;DRZ013020
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!2.36!258.61!PPARG;;chr14:38064429..38064486,-!p1@FOXA1!1.75!54.61!FOXA1;;chr6:34524093..34524135,-!p1@SPDEF!1.65!44.16!SPDEF;;chr17:46806016..46806029,-!p5@HOXB13!1.60!38.93!HOXB13;;chr12:66218255..66218304,+!p3@HMGA2!1.58!96.77!HMGA2;;chr10:38146482..38146507,-!p4@ZNF248!1.58!40.93!ZNF248;;chr17:46806035..46806059,-!p2@HOXB13!1.57!36.37!HOXB13;;chr17:46806067..46806097,-!p1@HOXB13!1.52!31.81!HOXB13;;chr21:38071430..38071456,+!p1@SIM2!1.48!29.03!SIM2;;chr11:65686802..65686818,+!p6@DRAP1!1.43!43.94!DRAP1;;chr17:46806419..46806438,-!p4@HOXB13!1.42!25.58!HOXB13;;chr6:34524049..34524089,-!p2@SPDEF!1.39!23.69!SPDEF;;chr1:201979703..201979721,+!p2@ELF3!1.39!23.58!ELF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.37!28.59!TFAP2C;;chr1:201979743..201979762,+!p1@ELF3!1.36!22.14!ELF3;;chr2:166326200..166326216,+!p1@CSRNP3!1.33!29.48!CSRNP3;;chr12:26277817..26277863,-!p2@BHLHE41!1.33!27.47!BHLHE41;;chr11:34642612..34642646,+!p1@EHF!1.33!20.36!EHF;;chr17:46806373..46806386,-!p6@HOXB13!1.29!18.69!HOXB13;;chr7:27205136..27205164,-!p1@HOXA9!1.28!17.91!HOXA9;;chr11:65667846..65667868,-!p1@FOSL1!1.27!449.93!FOSL1;;chr8:102504651..102504683,+!p1@GRHL2!1.26!17.35!GRHL2;;chr11:65686732..65686756,+!p2@DRAP1!1.25!70.08!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!1.23!464.95!HMGA1;;chr17:41623692..41623715,-!p1@ETV4!1.23!67.18!ETV4;;chr6:34524025..34524045,-!p3@SPDEF!1.22!15.46!SPDEF;;chr12:66218212..66218244,+!p5@HMGA2!1.21!22.25!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!1.18!18.46!NFATC2;;chr14:37131058..37131139,+!p1@PAX9!1.18!14.13!PAX9;;chr2:237076992..237077008,-!p2@GBX2!1.18!14.02!GBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.07!NR2F1;;chr7:27205106..27205134,-!p2@HOXA9!1.17!13.90!HOXA9;;chr12:26277956..26277980,-!p1@BHLHE41!1.16!47.94!BHLHE41;;chr11:65667884..65667895,-!p2@FOSL1!1.15!51.17!FOSL1;;chr10:38146510..38146576,-!p1@ZNF248!1.14!36.82!ZNF248;;chr12:27485762..27485776,+!p3@ARNTL2!1.14!34.70!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!1.13!18.91!ETV4;;chr4:81118647..81118666,+!p1@PRDM8!1.13!16.68!PRDM8;;chr6:10412600..10412637,-!p1@TFAP2A!1.12!20.24!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.11!55.17!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.11!22.80!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.10!11.68!HES2;;chr15:67418047..67418093,+!p4@SMAD3!1.09!14.24!SMAD3;;chr17:70117153..70117174,+!p1@SOX9!1.08!114.35!SOX9;;chr3:12329358..12329393,+!p3@PPARG!1.08!27.70!PPARG;;chr3:32023232..32023273,+!p1@ZNF860!1.07!15.46!ZNF860;;chr17:46806404..46806415,-!p7@HOXB13!1.07!10.79!HOXB13;;chr19:13134772..13134822,+!p2@NFIX!1.06!15.46!NFIX;;chr7:27224842..27224872,-!p1@HOXA11!1.06!10.46!HOXA11;;chr2:237077022..237077038,-!p1@GBX2!1.06!10.46!GBX2;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.24!ETV4;;chr3:169381420..169381535,-!p1@MECOM!1.05!12.12!MECOM;;chr15:67418119..67418162,+!p5@SMAD3!1.04!11.01!SMAD3;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.70!OSR1;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.35!BHLHE41;;chr7:27239703..27239715,-!p1@HOXA13!1.01!9.23!HOXA13;;chr8:77593474..77593612,+!p1@ZFHX4!0.98!36.82!ZFHX4;;chr20:55205825..55205847,+!p2@TFAP2C!0.98!8.56!TFAP2C;;chr13:73633131..73633149,+!p1@KLF5!0.97!92.43!KLF5;;chr8:80679993..80680011,-!p1@HEY1!0.97!12.24!HEY1;;chr7:27224795..27224840,-!p2@HOXA11!0.97!8.34!HOXA11;;chr20:22564895..22564910,-!p1@FOXA2!0.97!8.34!FOXA2;;chr1:42384532..42384603,-!p2@HIVEP3!0.97!8.23!HIVEP3;;chr12:27485785..27485816,+!p1@ARNTL2!0.96!57.73!ARNTL2;;chr1:209979467..209979494,-!p1@IRF6!0.96!9.12!IRF6;;chr22:19748231..19748317,+!p1@TBX1!0.96!8.12!TBX1;;chr5:92918860..92918871,+!p10@NR2F1!0.95!8.90!NR2F1;;chr10:135122868..135122893,+!p3@ZNF511!0.94!7.79!ZNF511;;chr3:12329397..12329433,+!p2@PPARG!0.92!17.35!PPARG;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.23!SOX7;;chr17:46682321..46682362,-!p1@HOXB6!0.92!7.23!HOXB6;;chr10:64134120..64134183,+!p1@ZNF365!0.91!8.79!ZNF365;;chr3:128212033..128212051,-!p1@GATA2!0.91!7.12!GATA2;;chr2:101436564..101436647,+!p1@NPAS2!0.90!146.71!NPAS2;;chr12:66218836..66218888,+!p1@HMGA2!0.90!68.30!HMGA2;;chr10:114710098..114710130,+!p2@TCF7L2!0.90!54.95!TCF7L2;;chr7:26191809..26191890,+!p1@NFE2L3!0.90!35.71!NFE2L3;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.47!SIX1;;chr3:21792585..21792625,-!p2@ZNF385D!0.89!7.56!ZNF385D;;chr10:64134045..64134083,+!p3@ZNF365!0.89!6.67!ZNF365;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.01!ZNF695;;chr12:27485823..27485868,+!p2@ARNTL2!0.87!27.59!ARNTL2;;chr7:42276787..42276815,-!p1@GLI3!0.87!18.13!GLI3;;chr15:96869511..96869525,+!p16@NR2F2!0.87!7.23!NR2F2;;chr10:77161504..77161530,-!p1@ZNF503!0.86!88.43!ZNF503;;chr21:27107465..27107557,+!p3@GABPA!0.86!23.91!GABPA;;chr5:92918894..92918912,+!p2@NR2F1!0.86!21.69!NR2F1;;chr12:66218378..66218401,+!p6@HMGA2!0.86!9.90!HMGA2;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.01!PAX6;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.01!IRX2;;chr5:92918768..92918783,+!p8@NR2F1!0.84!5.90!NR2F1;;chr10:135122906..135122921,+!p4@ZNF511!0.84!5.90!ZNF511;;chr8:145669791..145669834,-!p1@TONSL!0.83!17.35!TONSL;;chr17:41623009..41623053,-!p4@ETV4!0.82!9.45!ETV4;;chr17:46806098..46806118,-!p3@HOXB13!0.82!5.67!HOXB13;;chr11:65668011..65668020,-!p3@FOSL1!0.82!5.67!FOSL1;;chr21:38071403..38071428,+!p2@SIM2!0.82!5.67!SIM2;;chr21:38071462..38071474,+!p3@SIM2!0.82!5.67!SIM2;;chr10:77161533..77161546,-!p2@ZNF503!0.81!23.02!ZNF503;;chr10:76585303..76585354,+!p4@KAT6B!0.81!8.12!KAT6B;;chr14:38064590..38064606,-!p2@FOXA1!0.81!5.45!FOXA1;;chr11:120107344..120107351,+!p1@POU2F3!0.80!6.56!POU2F3;;chr8:116681409..116681431,-!p2@TRPS1!0.79!15.13!TRPS1;;chr6:1312325..1312340,+!p1@FOXQ1!0.79!8.68!FOXQ1;;chr17:41622834..41622883,-!p6@ETV4!0.79!6.45!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.79!5.12!ETV4;;chr12:115121962..115121987,-!p1@TBX3!0.78!46.61!TBX3;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.23!TFAP2A;;chr17:46806554..46806558,-!p9@HOXB13!0.78!5.01!HOXB13;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.89!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.77!4.89!HMGA2;;chr14:55493763..55493824,-!p1@WDHD1!0.76!39.82!WDHD1;;chr5:134369905..134369972,-!p1@PITX1!0.76!7.67!PITX1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.76!6.12!L3MBTL4;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.34!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.56!SIX2;;chr11:65554528..65554546,+!p1@OVOL1!0.75!4.56!OVOL1;;chr10:38146468..38146475,-!p12@ZNF248!0.74!4.45!ZNF248;;chr7:14029283..14029311,-!p1@ETV1!0.73!25.69!ETV1;;chr20:50159198..50159299,-!p1@NFATC2!0.73!6.67!NFATC2;;chr10:76585205..76585251,+!p3@KAT6B!0.72!10.01!KAT6B;;chr4:81104985..81105005,+!p4@PRDM8!0.72!5.34!PRDM8;;chr17:41623667..41623682,-!p8@ETV4!0.72!4.56!ETV4;;chr20:22565185..22565223,-!p3@FOXA2!0.72!4.23!FOXA2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.23!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.72!4.23!GRHL2;;chr8:76319876..76319926,+!p1@HNF4G!0.72!4.23!HNF4G;;chr6:34204672..34204692,+!p1@HMGA1!0.71!527.35!HMGA1;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.57!TWIST1;;chr19:12163769..12163798,-!p1@ZNF878!0.71!5.56!ZNF878;;chr5:92919452..92919496,+!p11@NR2F1!0.71!4.12!NR2F1;;chr7:27239740..27239759,-!p2@HOXA13!0.71!4.12!HOXA13;;chr6:21597600..21597664,+!p3@SOX4!0.70!7.12!SOX4;;chr2:172949484..172949522,+!p1@DLX1!0.70!4.00!DLX1;;chr20:42295745..42295765,+!p1@MYBL2!0.69!72.52!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.69!25.92!MYBL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.69!4.56!TFAP2A;;chr12:124873852..124873881,-!p3@NCOR2!0.68!25.81!NCOR2;;chr11:65686776..65686787,+!p9@DRAP1!0.68!4.67!DRAP1;;chr10:8095593..8095625,+!p3@GATA3!0.68!4.56!GATA3;;chr7:27192185..27192209,-!p1@HOXA3!0.68!3.78!HOXA3;;chr15:96874012..96874042,+!p2@NR2F2!0.67!38.15!NR2F2;;chr20:32274179..32274213,-!p1@E2F1!0.67!28.03!E2F1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.67!18.91!TAL1;;chr10:35415882..35415941,+!p4@CREM!0.67!18.69!CREM;;chr7:138666053..138666146,-!p1@KIAA1549!0.67!17.24!KIAA1549;;chr1:247171347..247171366,-!p2@ZNF695!0.67!7.23!ZNF695;;chr5:92919100..92919135,+!p3@NR2F1!0.67!4.56!NR2F1;;chrX:128657413..128657456,-!p2@SMARCA1!0.66!36.04!SMARCA1;;chr1:935398..935465,-!p2@HES4!0.66!8.12!HES4;;chr12:26278008..26278024,-!p4@BHLHE41!0.66!4.45!BHLHE41;;chr3:193853927..193853944,+!p1@HES1!0.65!132.59!HES1;;chr12:2986206..2986258,-!p2@FOXM1!0.65!24.36!FOXM1;;chr7:42276822..42276895,-!p2@GLI3!0.65!11.68!GLI3;;chr19:22817119..22817145,+!p1@ZNF492!0.65!6.23!ZNF492;;chr19:17356189..17356221,-!p2@NR2F6!0.65!6.12!NR2F6;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.89!DRAP1;;chr15:67418099..67418118,+!p16@SMAD3!0.65!3.45!SMAD3;;chr19:3574330..3574393,+!p2@HMG20B!0.64!3.34!HMG20B;;chr10:76586348..76586366,+!p1@KAT6B!0.63!29.14!KAT6B;;chr11:65554563..65554576,+!p2@OVOL1!0.63!3.23!OVOL1;;chr19:23433144..23433204,-!p1@ZNF724P!0.62!16.68!ZNF724P;;chr12:66218152..66218174,+!p10@HMGA2!0.62!3.45!HMGA2;;chr5:88178983..88179012,-!p1@MEF2C!0.61!28.36!MEF2C;;chr8:146228270..146228295,-!p1@ZNF252!0.61!20.36!ZNF252P;;chr9:124976185..124976212,-!p4@LHX6!0.61!3.11!LHX6;;chr7:64838786..64838809,+!p2@ZNF92!0.60!20.02!ZNF92;;chr17:56065729..56065781,-!p2@VEZF1!0.60!15.13!VEZF1;;chr3:24536253..24536328,-!p1@THRB!0.60!6.23!THRB;;chr19:13134457..13134462,+!p5@NFIX!0.60!5.90!NFIX;;chr12:66218443..66218461,+!p8@HMGA2!0.60!4.00!HMGA2;;chr17:41623259..41623278,-!p7@ETV4!0.60!3.56!ETV4;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!0.60!3.00!TFAP2A;;chr19:53193731..53193767,-!p1@ZNF83!0.59!31.70!ZNF83;;chr19:53496768..53496799,-!p1@ZNF702P!0.59!4.89!ZNF702P;;chr18:56531584..56531646,+!p4@ZNF532!0.59!4.12!ZNF532;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.23!NR2F1;;chr5:134369879..134369898,-!p2@PITX1!0.59!2.89!PITX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.59!2.89!TFAP2A;;chr17:45928443..45928473,-!p2@SP6!0.59!2.89!SP6;;chr2:63277948..63277974,+!p1@OTX1!0.59!2.89!OTX1;;chr10:114709999..114710031,+!p1@TCF7L2!0.58!81.20!TCF7L2;;chr18:19749541..19749557,+!p1@GATA6!0.58!10.46!GATA6;;chr17:41623716..41623727,-!p12@ETV4!0.58!2.78!ETV4;;chr14:38064495.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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10439-106E7
 |is_a=EFO:0002091;;FF:0000210;;FF:0101061
 |is_obsolete=
+|library_id=CNhs11243
+|library_id_phase_based=2:CNhs11243
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10439
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10439
 |name=prostate cancer cell line:PC-3
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11243,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 60: / Line 75: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=106E7
+|rna_tube_id=1.06E+09
 |rna_weight_ug=59.243
 |sample_age=62
+|sample_category=cell lines
 |sample_cell_catalog=RCB2145
 |sample_cell_line=PC-3
@@ Line 84: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10439-106E7;search_select_hide=table117:FF:10439-106E7
 }}

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FF:10439-106E7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0