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{{f5samples
{{f5samples
|id=FF:10454-106G4
|DRA_sample_Accession=CAGE@SAMD00004875
|name=chronic myelogenous leukemia cell line:K562, biol_rep1
|HumanCAGEScanFiles=NCig10060;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.NCig10060.10454-106G4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.NCig10060.10454-106G4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.NCig10060.10454-106G4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.NCig10060.10454-106G4.hg19.GCTATA.pairs.bed.gz
|sample_id=10454
|accession_numbers=CAGE;DRX007858;DRR008730;DRZ000155;DRZ001540;DRZ011505;DRZ012890
|rna_tube_id=106G4
|ancestors_in_anatomy_facet=
|rna_box=106
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|rna_position=G4
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:1036,DOID:8692
|sample_cell_lot=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0102580,FF:0101035,FF:0100740,FF:0100664
|sample_cell_catalog=RCB0027
|comment=
|sample_company=RIKEN Bioresource centre
|created_by=
|rna_lot_number=
|creation_date=
|rna_catalog_number=
|data_phase=2
|sample_species=Human (Homo sapiens)
|datafreeze_phase=2
|sample_strain=
|def=
|sample_dev_stage=
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|sample_tissue=blood
|ffid_belonging_in_development=CL:0000049,CL:0000134
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=53
|sample_ethnicity=unknown
|rna_rin=10.00000
|rna_od260/230=2.04000
|rna_od260/280=2.12000
|sample_cell_type=granulocyte
|sample_cell_line=K562
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=chronic myelogenous leukemia
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=32.20920
|rna_concentration=0.71576
|sample_note=
|profile_hcage=CNhs11250,LSID757,release008,COMPLETED
|profile_cagescan=NCig10060,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000566,CL:0000723,CL:0000763,CL:0000837,CL:0000988,CL:0002032,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=DOID:0050686,DOID:0060083,DOID:1036,DOID:1240,DOID:14566,DOID:162,DOID:2531,DOID:4,DOID:8692
|sample_description=
 
|fonse_cell_line=FF:0101035
|fonse_cell_line=FF:0101035
|fonse_cell_line_closure=FF:0101035
|fonse_cell_line_closure=FF:0101035
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg38.nobarcode.ctss.bed.gz
|id=FF:10454-106G4
|is_a=EFO:0002091;;FF:0000210;;FF:0100664
|is_obsolete=
|library_id=CNhs11250
|library_id_phase_based=2:CNhs11250
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10454
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10454
|name=chronic myelogenous leukemia cell line:K562
|namespace=FANTOM5
|part_of=
|profile_cagescan=NCig10060,,,
|profile_hcage=CNhs11250,LSID757,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0205939750035058,0,-0.0992509344753296,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.0417661588148228,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.103286307424627,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.0596269305914599,0,-0.0215352852175146,0,0,0.147925898644901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0377285380125452,0,0.203619297724565,0,0,-0.0639439048561032,-0.197032549992556,0.292521915673679,0,0,-0.0584468268118252,-0.0663172589389805,0.0377285380125452,0,0,0,-0.0225782752126159,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,1.11502608908929,0,0,0,0,0,0,0.0262611690065379,0.13972405508288,0,0,-0.0478055312598727,-0.00621803458389425,0,0,0,0,0,0
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|rna_box=106
|rna_catalog_number=
|rna_concentration=0.71576
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.04
|rna_od260/280=2.12
|rna_position=G4
|rna_rin=10
|rna_sample_type=total RNA
|rna_tube_id=106G4
|rna_weight_ug=32.2092
|sample_age=53
|sample_category=cell lines
|sample_cell_catalog=RCB0027
|sample_cell_line=K562
|sample_cell_lot=
|sample_cell_type=granulocyte
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=chronic myelogenous leukemia
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.86345833324349e-304!GO:0043231;intracellular membrane-bound organelle;9.59917200406204e-259!GO:0043227;membrane-bound organelle;9.59917200406204e-259!GO:0043226;organelle;4.18043289029555e-257!GO:0043229;intracellular organelle;1.52971958085767e-256!GO:0044422;organelle part;2.121294503739e-194!GO:0044446;intracellular organelle part;2.4962941766742e-193!GO:0005737;cytoplasm;1.39234238185878e-176!GO:0044444;cytoplasmic part;6.2052175349172e-136!GO:0044237;cellular metabolic process;2.19145995760045e-134!GO:0032991;macromolecular complex;1.43098054078412e-129!GO:0044238;primary metabolic process;2.43877283857999e-128!GO:0005634;nucleus;1.82478068591926e-124!GO:0043170;macromolecule metabolic process;4.28757675208154e-119!GO:0030529;ribonucleoprotein complex;2.08197254219235e-111!GO:0044428;nuclear part;2.5727750341592e-109!GO:0043233;organelle lumen;1.71045419222338e-106!GO:0031974;membrane-enclosed lumen;1.71045419222338e-106!GO:0003723;RNA binding;3.68374253779947e-98!GO:0005739;mitochondrion;1.22926190192781e-91!GO:0006396;RNA processing;2.08880867751989e-75!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.80609185971848e-71!GO:0043283;biopolymer metabolic process;1.26691023550785e-70!GO:0010467;gene expression;1.57875613701143e-67!GO:0031981;nuclear lumen;1.3394486417256e-66!GO:0006412;translation;1.85568434924859e-65!GO:0005840;ribosome;1.26394438920162e-64!GO:0043234;protein complex;1.88555418389268e-64!GO:0044429;mitochondrial part;2.36931882279639e-63!GO:0009058;biosynthetic process;4.12355196933932e-58!GO:0031967;organelle envelope;2.7037361749938e-57!GO:0031975;envelope;7.37494582722084e-57!GO:0006259;DNA metabolic process;2.92062861892813e-56!GO:0003735;structural constituent of ribosome;5.60241047224423e-56!GO:0031090;organelle membrane;3.19674455121402e-55!GO:0044249;cellular biosynthetic process;4.89424368432315e-55!GO:0005515;protein binding;5.06480114222943e-54!GO:0019538;protein metabolic process;1.25230473686962e-53!GO:0016071;mRNA metabolic process;4.09139334264236e-53!GO:0009059;macromolecule biosynthetic process;2.12376632676704e-52!GO:0003676;nucleic acid binding;2.92239803878013e-50!GO:0006397;mRNA processing;1.71697608606536e-48!GO:0044267;cellular protein metabolic process;3.70161712202848e-48!GO:0044260;cellular macromolecule metabolic process;7.1125017571266e-48!GO:0033279;ribosomal subunit;3.83674331734212e-47!GO:0008380;RNA splicing;4.12761125046553e-47!GO:0016043;cellular component organization and biogenesis;3.9365500795556e-46!GO:0043228;non-membrane-bound organelle;7.27424734722524e-46!GO:0043232;intracellular non-membrane-bound organelle;7.27424734722524e-46!GO:0033036;macromolecule localization;1.18385479297504e-44!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.43919019271945e-44!GO:0006996;organelle organization and biogenesis;2.88099056069811e-43!GO:0015031;protein transport;6.12191296060207e-43!GO:0065003;macromolecular complex assembly;4.28437008477483e-40!GO:0005654;nucleoplasm;4.66638873352074e-40!GO:0005740;mitochondrial envelope;1.28176312899911e-39!GO:0008104;protein localization;1.53647960138738e-39!GO:0045184;establishment of protein localization;2.91128100527363e-39!GO:0046907;intracellular transport;1.16851391350228e-38!GO:0019866;organelle inner membrane;1.39129603694437e-38!GO:0005829;cytosol;7.38898644535662e-38!GO:0031966;mitochondrial membrane;9.60313662984467e-37!GO:0005743;mitochondrial inner membrane;8.09564169479225e-36!GO:0005681;spliceosome;9.18771308577018e-35!GO:0022607;cellular component assembly;9.18771308577018e-35!GO:0007049;cell cycle;1.19196346515803e-34!GO:0016070;RNA metabolic process;3.00058002302055e-34!GO:0000166;nucleotide binding;3.69139463621487e-33!GO:0006886;intracellular protein transport;2.9926695522888e-32!GO:0006974;response to DNA damage stimulus;2.8301995426421e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.75996955892076e-31!GO:0044451;nucleoplasm part;4.9199328915554e-31!GO:0005694;chromosome;3.77323871535421e-30!GO:0006281;DNA repair;6.86114970878202e-30!GO:0044445;cytosolic part;2.38886886536333e-29!GO:0031980;mitochondrial lumen;1.25100118014686e-28!GO:0005759;mitochondrial matrix;1.25100118014686e-28!GO:0005730;nucleolus;3.07428546844273e-28!GO:0016462;pyrophosphatase activity;1.08548922570748e-27!GO:0000278;mitotic cell cycle;1.22978357742905e-27!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.60844006688951e-27!GO:0016817;hydrolase activity, acting on acid anhydrides;2.2627606253458e-27!GO:0044455;mitochondrial membrane part;3.02658438692136e-27!GO:0051649;establishment of cellular localization;7.97510217230845e-27!GO:0017111;nucleoside-triphosphatase activity;8.65346832523242e-27!GO:0051276;chromosome organization and biogenesis;2.48266849329361e-26!GO:0051641;cellular localization;2.6642480158284e-26!GO:0006119;oxidative phosphorylation;3.88689431008951e-26!GO:0022402;cell cycle process;1.53928053554795e-25!GO:0044427;chromosomal part;1.81173210109101e-25!GO:0016874;ligase activity;8.23291133104963e-25!GO:0015934;large ribosomal subunit;1.52934962503903e-24!GO:0006260;DNA replication;6.94864366017426e-24!GO:0015935;small ribosomal subunit;9.65223405344876e-24!GO:0006457;protein folding;1.84364907478039e-23!GO:0022403;cell cycle phase;1.99277815816656e-23!GO:0042254;ribosome biogenesis and assembly;4.67936068484502e-23!GO:0000087;M phase of mitotic cell cycle;5.34263119403789e-23!GO:0016887;ATPase activity;1.65559410392074e-22!GO:0007067;mitosis;1.65559410392074e-22!GO:0051301;cell division;2.02225109040613e-22!GO:0006512;ubiquitin cycle;2.28366075427432e-22!GO:0022618;protein-RNA complex assembly;2.7327626698292e-22!GO:0032553;ribonucleotide binding;1.04316289223774e-21!GO:0032555;purine ribonucleotide binding;1.04316289223774e-21!GO:0017076;purine nucleotide binding;1.04559253163517e-21!GO:0005524;ATP binding;1.11213286737155e-21!GO:0032559;adenyl ribonucleotide binding;1.2683915595793e-21!GO:0030554;adenyl nucleotide binding;2.43429376702888e-21!GO:0042623;ATPase activity, coupled;3.1051310975454e-21!GO:0009719;response to endogenous stimulus;3.34602134512833e-21!GO:0012505;endomembrane system;8.96007821928562e-21!GO:0000279;M phase;9.95942465666164e-21!GO:0005761;mitochondrial ribosome;1.31150977969586e-20!GO:0000313;organellar ribosome;1.31150977969586e-20!GO:0006399;tRNA metabolic process;1.34858300376066e-20!GO:0005746;mitochondrial respiratory chain;1.85406708380386e-20!GO:0044265;cellular macromolecule catabolic process;2.3242689325407e-20!GO:0051186;cofactor metabolic process;5.64113642909798e-20!GO:0006325;establishment and/or maintenance of chromatin architecture;1.99920377464825e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.46575622586895e-19!GO:0044453;nuclear membrane part;5.39958741156251e-19!GO:0004386;helicase activity;6.95014616520385e-19!GO:0006323;DNA packaging;8.67027363797848e-19!GO:0031965;nuclear membrane;1.34914306895522e-18!GO:0008135;translation factor activity, nucleic acid binding;2.43906463032038e-18!GO:0005635;nuclear envelope;3.80459389209254e-18!GO:0050136;NADH dehydrogenase (quinone) activity;8.28412068714929e-18!GO:0003954;NADH dehydrogenase activity;8.28412068714929e-18!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.28412068714929e-18!GO:0043285;biopolymer catabolic process;1.02952765910566e-17!GO:0009057;macromolecule catabolic process;1.7339933939608e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;4.85111056497017e-17!GO:0000375;RNA splicing, via transesterification reactions;4.85111056497017e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.85111056497017e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;5.08581870220153e-17!GO:0005643;nuclear pore;5.46320079542313e-17!GO:0006511;ubiquitin-dependent protein catabolic process;5.52484187053627e-17!GO:0019941;modification-dependent protein catabolic process;5.55421937608045e-17!GO:0043632;modification-dependent macromolecule catabolic process;5.55421937608045e-17!GO:0044248;cellular catabolic process;6.13794863006304e-17!GO:0044257;cellular protein catabolic process;1.12637517373411e-16!GO:0051082;unfolded protein binding;1.78146491241783e-16!GO:0042775;organelle ATP synthesis coupled electron transport;1.95663863940332e-16!GO:0042773;ATP synthesis coupled electron transport;1.95663863940332e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.35803541818205e-16!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.12406686754683e-16!GO:0006605;protein targeting;5.19161377395484e-16!GO:0030964;NADH dehydrogenase complex (quinone);5.65499585220434e-16!GO:0045271;respiratory chain complex I;5.65499585220434e-16!GO:0005747;mitochondrial respiratory chain complex I;5.65499585220434e-16!GO:0048770;pigment granule;9.19182659582341e-16!GO:0042470;melanosome;9.19182659582341e-16!GO:0016604;nuclear body;9.5566575986588e-16!GO:0050657;nucleic acid transport;9.5806720663371e-16!GO:0051236;establishment of RNA localization;9.5806720663371e-16!GO:0050658;RNA transport;9.5806720663371e-16!GO:0006403;RNA localization;1.39394796876863e-15!GO:0006732;coenzyme metabolic process;1.54477193475327e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.75992103828126e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.92748200682706e-15!GO:0008026;ATP-dependent helicase activity;2.52014388723558e-15!GO:0006364;rRNA processing;3.07180851215398e-15!GO:0016072;rRNA metabolic process;4.71300384478099e-15!GO:0000502;proteasome complex (sensu Eukaryota);8.42235780572382e-15!GO:0046930;pore complex;1.57000080056368e-14!GO:0003743;translation initiation factor activity;1.79713542714638e-14!GO:0008134;transcription factor binding;1.87699349465497e-14!GO:0065002;intracellular protein transport across a membrane;1.91238280062513e-14!GO:0016568;chromatin modification;2.71496045248646e-14!GO:0051188;cofactor biosynthetic process;5.45829648424985e-14!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.64081487525266e-14!GO:0006413;translational initiation;1.56511931484801e-13!GO:0051028;mRNA transport;1.71214323047353e-13!GO:0030163;protein catabolic process;1.87799269221536e-13!GO:0043412;biopolymer modification;2.11525911788076e-13!GO:0044432;endoplasmic reticulum part;2.94121733663779e-13!GO:0000775;chromosome, pericentric region;4.35942499651096e-13!GO:0005783;endoplasmic reticulum;6.06669955678813e-13!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.60406098221998e-13!GO:0004812;aminoacyl-tRNA ligase activity;7.60406098221998e-13!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.60406098221998e-13!GO:0006913;nucleocytoplasmic transport;1.22285763010613e-12!GO:0016779;nucleotidyltransferase activity;1.23055653605989e-12!GO:0043038;amino acid activation;1.47952383526623e-12!GO:0006418;tRNA aminoacylation for protein translation;1.47952383526623e-12!GO:0043039;tRNA aminoacylation;1.47952383526623e-12!GO:0016607;nuclear speck;1.61738510366497e-12!GO:0009259;ribonucleotide metabolic process;2.4842066340954e-12!GO:0006261;DNA-dependent DNA replication;3.13109571511657e-12!GO:0051169;nuclear transport;3.1594057912951e-12!GO:0006163;purine nucleotide metabolic process;3.38307583745404e-12!GO:0006461;protein complex assembly;1.37945320637785e-11!GO:0016740;transferase activity;1.38198348348505e-11!GO:0006446;regulation of translational initiation;1.38437251169929e-11!GO:0048193;Golgi vesicle transport;1.43369909740689e-11!GO:0000785;chromatin;1.62491183595999e-11!GO:0006164;purine nucleotide biosynthetic process;2.28825343994807e-11!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.98960538647607e-11!GO:0065004;protein-DNA complex assembly;3.23529918143359e-11!GO:0003712;transcription cofactor activity;3.60559093125697e-11!GO:0009260;ribonucleotide biosynthetic process;4.89204113281146e-11!GO:0009150;purine ribonucleotide metabolic process;8.21329972882206e-11!GO:0006333;chromatin assembly or disassembly;8.42201746579617e-11!GO:0015630;microtubule cytoskeleton;9.0929916449428e-11!GO:0008565;protein transporter activity;1.01910067688374e-10!GO:0009108;coenzyme biosynthetic process;1.12772528162997e-10!GO:0003899;DNA-directed RNA polymerase activity;1.30447611946682e-10!GO:0006366;transcription from RNA polymerase II promoter;1.49554373292407e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.67215192095115e-10!GO:0006464;protein modification process;1.97341420213113e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.5121760385936e-10!GO:0009055;electron carrier activity;4.10383167902128e-10!GO:0009152;purine ribonucleotide biosynthetic process;5.60410997128323e-10!GO:0008639;small protein conjugating enzyme activity;6.23790172109616e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.31911596156875e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.89256560788929e-10!GO:0016787;hydrolase activity;1.14087987336914e-09!GO:0051726;regulation of cell cycle;1.38705838982714e-09!GO:0009141;nucleoside triphosphate metabolic process;1.51946718687285e-09!GO:0007005;mitochondrion organization and biogenesis;1.57884436299331e-09!GO:0000074;regulation of progression through cell cycle;1.62117827034725e-09!GO:0016741;transferase activity, transferring one-carbon groups;1.66067817776269e-09!GO:0008033;tRNA processing;1.80850815350121e-09!GO:0004842;ubiquitin-protein ligase activity;1.94511041927732e-09!GO:0005789;endoplasmic reticulum membrane;1.9998334725603e-09!GO:0008168;methyltransferase activity;2.00267176470292e-09!GO:0005794;Golgi apparatus;2.2042011911636e-09!GO:0017038;protein import;2.40231396908104e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.0245106084549e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.14604735097279e-09!GO:0019787;small conjugating protein ligase activity;4.10933416450442e-09!GO:0015986;ATP synthesis coupled proton transport;4.5411863880527e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.5411863880527e-09!GO:0005813;centrosome;5.09653619184356e-09!GO:0008094;DNA-dependent ATPase activity;5.42567701483117e-09!GO:0043687;post-translational protein modification;6.1768160440577e-09!GO:0043566;structure-specific DNA binding;7.01737889174827e-09!GO:0009056;catabolic process;7.60737641489206e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.64435032867305e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.64435032867305e-09!GO:0009142;nucleoside triphosphate biosynthetic process;8.18359571057243e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.18359571057243e-09!GO:0003697;single-stranded DNA binding;8.9045388661629e-09!GO:0005815;microtubule organizing center;9.4184003724864e-09!GO:0015078;hydrogen ion transmembrane transporter activity;1.39269095782436e-08!GO:0016192;vesicle-mediated transport;1.45284619264354e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.94381348641521e-08!GO:0046034;ATP metabolic process;1.95510848274523e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.15172722676557e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.15172722676557e-08!GO:0019829;cation-transporting ATPase activity;2.18284053314552e-08!GO:0044452;nucleolar part;2.34493148203116e-08!GO:0006754;ATP biosynthetic process;4.05977561267394e-08!GO:0006753;nucleoside phosphate metabolic process;4.05977561267394e-08!GO:0006752;group transfer coenzyme metabolic process;4.08074827723093e-08!GO:0005819;spindle;4.8112414140142e-08!GO:0009060;aerobic respiration;5.48130410859371e-08!GO:0016881;acid-amino acid ligase activity;6.32751935824161e-08!GO:0051329;interphase of mitotic cell cycle;7.93907051366102e-08!GO:0009117;nucleotide metabolic process;8.18384207622495e-08!GO:0000245;spliceosome assembly;9.54122108961395e-08!GO:0005657;replication fork;1.04676134682785e-07!GO:0043623;cellular protein complex assembly;1.22039049641666e-07!GO:0000075;cell cycle checkpoint;1.27430820915054e-07!GO:0051325;interphase;1.51373797997994e-07!GO:0005667;transcription factor complex;1.87151898781175e-07!GO:0008654;phospholipid biosynthetic process;1.94009888205226e-07!GO:0012501;programmed cell death;2.16396446740139e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.3387708515521e-07!GO:0045333;cellular respiration;2.46425623595503e-07!GO:0019222;regulation of metabolic process;2.64314338750465e-07!GO:0006915;apoptosis;2.79908850327006e-07!GO:0045259;proton-transporting ATP synthase complex;2.89001185353722e-07!GO:0003724;RNA helicase activity;3.26152553438762e-07!GO:0005762;mitochondrial large ribosomal subunit;3.44437446606894e-07!GO:0000315;organellar large ribosomal subunit;3.44437446606894e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.51534419457391e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.54578209092848e-07!GO:0006302;double-strand break repair;4.61613125593409e-07!GO:0000151;ubiquitin ligase complex;5.02254270402146e-07!GO:0006334;nucleosome assembly;5.03184201046218e-07!GO:0032446;protein modification by small protein conjugation;5.62204517598664e-07!GO:0031497;chromatin assembly;6.22887674267945e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.57920541571991e-07!GO:0006084;acetyl-CoA metabolic process;8.43932867406285e-07!GO:0006099;tricarboxylic acid cycle;8.88579213195752e-07!GO:0046356;acetyl-CoA catabolic process;8.88579213195752e-07!GO:0051168;nuclear export;9.04255566255473e-07!GO:0000314;organellar small ribosomal subunit;9.56349393756507e-07!GO:0005763;mitochondrial small ribosomal subunit;9.56349393756507e-07!GO:0016567;protein ubiquitination;1.09587347479767e-06!GO:0000776;kinetochore;1.15734159608986e-06!GO:0008219;cell death;1.18274594344054e-06!GO:0016265;death;1.18274594344054e-06!GO:0005793;ER-Golgi intermediate compartment;1.18873285882664e-06!GO:0003713;transcription coactivator activity;1.29940695885999e-06!GO:0003678;DNA helicase activity;1.48533853461605e-06!GO:0005768;endosome;1.53946283898686e-06!GO:0051246;regulation of protein metabolic process;2.34129612031095e-06!GO:0003682;chromatin binding;3.36345024123638e-06!GO:0006310;DNA recombination;3.77060124841573e-06!GO:0016853;isomerase activity;4.35788910889104e-06!GO:0051170;nuclear import;4.41684811821755e-06!GO:0003684;damaged DNA binding;4.5129827899547e-06!GO:0004518;nuclease activity;4.64040884979347e-06!GO:0006091;generation of precursor metabolites and energy;4.67349314800387e-06!GO:0004527;exonuclease activity;4.73820457052086e-06!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;4.75053492510672e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.79812288760416e-06!GO:0016491;oxidoreductase activity;4.95792787547172e-06!GO:0009109;coenzyme catabolic process;5.36412022971522e-06!GO:0048475;coated membrane;6.0412246704696e-06!GO:0030117;membrane coat;6.0412246704696e-06!GO:0007059;chromosome segregation;6.11779766106378e-06!GO:0006839;mitochondrial transport;6.30369487990776e-06!GO:0016563;transcription activator activity;6.49131815362197e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.77690951720339e-06!GO:0015399;primary active transmembrane transporter activity;6.77690951720339e-06!GO:0006613;cotranslational protein targeting to membrane;8.21112775673952e-06!GO:0031323;regulation of cellular metabolic process;8.83558310658524e-06!GO:0006383;transcription from RNA polymerase III promoter;9.0985504125241e-06!GO:0046483;heterocycle metabolic process;9.82930984045813e-06!GO:0006626;protein targeting to mitochondrion;1.03815977893748e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.05235354556438e-05!GO:0005788;endoplasmic reticulum lumen;1.09923375304595e-05!GO:0006606;protein import into nucleus;1.27831377782458e-05!GO:0009165;nucleotide biosynthetic process;1.28497598342737e-05!GO:0006352;transcription initiation;1.30092795632809e-05!GO:0050794;regulation of cellular process;1.48555627747251e-05!GO:0006350;transcription;1.55014218152434e-05!GO:0043021;ribonucleoprotein binding;1.55278485439401e-05!GO:0007051;spindle organization and biogenesis;1.55841008350617e-05!GO:0032508;DNA duplex unwinding;1.84543002579e-05!GO:0032392;DNA geometric change;1.84543002579e-05!GO:0006414;translational elongation;1.87612685343612e-05!GO:0051187;cofactor catabolic process;2.17354845003059e-05!GO:0051052;regulation of DNA metabolic process;2.53508600933157e-05!GO:0030880;RNA polymerase complex;2.5657936136492e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.93828135460357e-05!GO:0030120;vesicle coat;3.22584556367402e-05!GO:0030662;coated vesicle membrane;3.22584556367402e-05!GO:0044431;Golgi apparatus part;3.50542288753935e-05!GO:0046474;glycerophospholipid biosynthetic process;3.67516748496658e-05!GO:0043681;protein import into mitochondrion;3.77838984980943e-05!GO:0046467;membrane lipid biosynthetic process;3.89760002084039e-05!GO:0008186;RNA-dependent ATPase activity;3.91407454317216e-05!GO:0044440;endosomal part;3.95593088662144e-05!GO:0010008;endosome membrane;3.95593088662144e-05!GO:0046489;phosphoinositide biosynthetic process;3.96482371155319e-05!GO:0006401;RNA catabolic process;4.3866957266982e-05!GO:0016363;nuclear matrix;4.87023162694671e-05!GO:0019752;carboxylic acid metabolic process;5.23444582623557e-05!GO:0007093;mitotic cell cycle checkpoint;5.64107352764915e-05!GO:0000049;tRNA binding;5.67740896978478e-05!GO:0006082;organic acid metabolic process;6.20198072161105e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.31687125258351e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.51511765587763e-05!GO:0055029;nuclear DNA-directed RNA polymerase complex;6.88551354472962e-05!GO:0000428;DNA-directed RNA polymerase complex;6.88551354472962e-05!GO:0031988;membrane-bound vesicle;6.96012923421955e-05!GO:0006268;DNA unwinding during replication;7.06089593587472e-05!GO:0003690;double-stranded DNA binding;7.1478244429451e-05!GO:0051427;hormone receptor binding;7.39358391736696e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.881513256117e-05!GO:0007017;microtubule-based process;8.50691034048068e-05!GO:0005798;Golgi-associated vesicle;8.50978817222748e-05!GO:0043492;ATPase activity, coupled to movement of substances;9.66966590109275e-05!GO:0000059;protein import into nucleus, docking;9.89571267130116e-05!GO:0006402;mRNA catabolic process;0.000101123651741193!GO:0009451;RNA modification;0.000101200795396116!GO:0016023;cytoplasmic membrane-bound vesicle;0.000106911942222405!GO:0005839;proteasome core complex (sensu Eukaryota);0.00011648841189801!GO:0045454;cell redox homeostasis;0.000119111191109504!GO:0016859;cis-trans isomerase activity;0.000119508489811991!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000119619883706342!GO:0004004;ATP-dependent RNA helicase activity;0.000120608668546895!GO:0006520;amino acid metabolic process;0.000126152262305327!GO:0015992;proton transport;0.000133784739290535!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000137225774786467!GO:0035257;nuclear hormone receptor binding;0.000156794436677273!GO:0006818;hydrogen transport;0.000159623326809936!GO:0042981;regulation of apoptosis;0.000172909805604286!GO:0006270;DNA replication initiation;0.000173069796322754!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000180178894301487!GO:0043067;regulation of programmed cell death;0.000186313613997331!GO:0003677;DNA binding;0.000190205494839293!GO:0005874;microtubule;0.000196629782444535!GO:0031072;heat shock protein binding;0.000211385535754648!GO:0006405;RNA export from nucleus;0.000216856529598695!GO:0007088;regulation of mitosis;0.000220466002032124!GO:0006612;protein targeting to membrane;0.000221274848225041!GO:0016251;general RNA polymerase II transcription factor activity;0.000221772122230432!GO:0010468;regulation of gene expression;0.000226747489085754!GO:0005758;mitochondrial intermembrane space;0.000235798250616271!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000241560034750004!GO:0005770;late endosome;0.000242013372338336!GO:0006338;chromatin remodeling;0.000263042810652561!GO:0031982;vesicle;0.000270827664419445!GO:0050662;coenzyme binding;0.000281075230949229!GO:0003729;mRNA binding;0.000283420452634658!GO:0043284;biopolymer biosynthetic process;0.000345838731973059!GO:0004298;threonine endopeptidase activity;0.0003475395151438!GO:0006793;phosphorus metabolic process;0.000355401598481803!GO:0006796;phosphate metabolic process;0.000355401598481803!GO:0008276;protein methyltransferase activity;0.000374756816551027!GO:0007006;mitochondrial membrane organization and biogenesis;0.000382353573995405!GO:0000096;sulfur amino acid metabolic process;0.000388374751302529!GO:0015631;tubulin binding;0.000402029630804254!GO:0016310;phosphorylation;0.000441703622209313!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000451931283018383!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000476699065045593!GO:0000819;sister chromatid segregation;0.000490645935452045!GO:0019899;enzyme binding;0.00049473018048872!GO:0008610;lipid biosynthetic process;0.000499068183669383!GO:0031410;cytoplasmic vesicle;0.000503621774915277!GO:0000139;Golgi membrane;0.000513639386493122!GO:0005684;U2-dependent spliceosome;0.000528553561329338!GO:0008250;oligosaccharyl transferase complex;0.000545771026118784!GO:0031970;organelle envelope lumen;0.000591745629982047!GO:0051540;metal cluster binding;0.000604562741806306!GO:0051536;iron-sulfur cluster binding;0.000604562741806306!GO:0019867;outer membrane;0.000607833762199041!GO:0031968;organelle outer membrane;0.000616352964252829!GO:0032774;RNA biosynthetic process;0.000628955752268405!GO:0000922;spindle pole;0.000629128118706214!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0006368171040244!GO:0004576;oligosaccharyl transferase activity;0.0006368171040244!GO:0003711;transcription elongation regulator activity;0.000637248624571989!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000643280160113771!GO:0000070;mitotic sister chromatid segregation;0.000649053619444026!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000661070873139546!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000661070873139546!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000661070873139546!GO:0030384;phosphoinositide metabolic process;0.000661070873139546!GO:0015980;energy derivation by oxidation of organic compounds;0.000662001819265071!GO:0051087;chaperone binding;0.000662032419534857!GO:0051920;peroxiredoxin activity;0.000674138024415237!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000683102879743981!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000685109432545394!GO:0030867;rough endoplasmic reticulum membrane;0.000727025811531481!GO:0006506;GPI anchor biosynthetic process;0.000733486485108364!GO:0051539;4 iron, 4 sulfur cluster binding;0.000746230123360221!GO:0016564;transcription repressor activity;0.000746230123360221!GO:0048037;cofactor binding;0.000746230123360221!GO:0032259;methylation;0.000750223884020257!GO:0003714;transcription corepressor activity;0.000772529491514098!GO:0006779;porphyrin biosynthetic process;0.00079998530992674!GO:0033014;tetrapyrrole biosynthetic process;0.00079998530992674!GO:0006351;transcription, DNA-dependent;0.000819197514055051!GO:0005669;transcription factor TFIID complex;0.00083642829463162!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000842694779268977!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000905943924547895!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000905943924547895!GO:0043596;nuclear replication fork;0.000915040416848751!GO:0005637;nuclear inner membrane;0.00094324583367958!GO:0006611;protein export from nucleus;0.00100250378574132!GO:0032200;telomere organization and biogenesis;0.00100809055484096!GO:0000723;telomere maintenance;0.00100809055484096!GO:0048500;signal recognition particle;0.00110684769763644!GO:0007052;mitotic spindle organization and biogenesis;0.00114457771055677!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00114457771055677!GO:0006505;GPI anchor metabolic process;0.00115550990777624!GO:0008312;7S RNA binding;0.00115623155235683!GO:0000725;recombinational repair;0.00117177469472841!GO:0000724;double-strand break repair via homologous recombination;0.00117177469472841!GO:0006144;purine base metabolic process;0.00119833379830072!GO:0005048;signal sequence binding;0.00119897494382823!GO:0006519;amino acid and derivative metabolic process;0.00120587866070366!GO:0005741;mitochondrial outer membrane;0.00130290530532784!GO:0006400;tRNA modification;0.00131248540408633!GO:0047485;protein N-terminus binding;0.00132466362876688!GO:0000152;nuclear ubiquitin ligase complex;0.00132466362876688!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00132466362876688!GO:0031124;mRNA 3'-end processing;0.00132466362876688!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00135942071307106!GO:0000786;nucleosome;0.00143309849078122!GO:0051252;regulation of RNA metabolic process;0.00145824607958689!GO:0006730;one-carbon compound metabolic process;0.00146930183502339!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00150406597053525!GO:0005769;early endosome;0.00151353647171407!GO:0000228;nuclear chromosome;0.00157986706746641!GO:0006275;regulation of DNA replication;0.00163552813512302!GO:0016272;prefoldin complex;0.00163946395390766!GO:0005885;Arp2/3 protein complex;0.00165131864472023!GO:0043414;biopolymer methylation;0.00170913654334713!GO:0008022;protein C-terminus binding;0.00174220256380113!GO:0004003;ATP-dependent DNA helicase activity;0.00180857906941197!GO:0003924;GTPase activity;0.00189038382310378!GO:0000178;exosome (RNase complex);0.00191882405647291!GO:0006891;intra-Golgi vesicle-mediated transport;0.00196503597353521!GO:0048471;perinuclear region of cytoplasm;0.0020613653042774!GO:0031570;DNA integrity checkpoint;0.00214832905374118!GO:0009112;nucleobase metabolic process;0.00220287437328563!GO:0019783;small conjugating protein-specific protease activity;0.00230107823796483!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00230239983475858!GO:0006783;heme biosynthetic process;0.00230655878530687!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00238422482394139!GO:0005791;rough endoplasmic reticulum;0.00238422482394139!GO:0031123;RNA 3'-end processing;0.00253355922470008!GO:0043601;nuclear replisome;0.00260974940509413!GO:0030894;replisome;0.00260974940509413!GO:0043624;cellular protein complex disassembly;0.00260974940509413!GO:0006778;porphyrin metabolic process;0.00260974940509413!GO:0033013;tetrapyrrole metabolic process;0.00260974940509413!GO:0006289;nucleotide-excision repair;0.00260974940509413!GO:0043069;negative regulation of programmed cell death;0.00261003539698957!GO:0008408;3'-5' exonuclease activity;0.00264923288346177!GO:0031324;negative regulation of cellular metabolic process;0.00266915875792889!GO:0006497;protein amino acid lipidation;0.0026801004171393!GO:0005876;spindle microtubule;0.00270297550348708!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00270849148949818!GO:0045047;protein targeting to ER;0.00270849148949818!GO:0006650;glycerophospholipid metabolic process;0.00271567402436382!GO:0006916;anti-apoptosis;0.00282435598539615!GO:0018196;peptidyl-asparagine modification;0.00287349032468824!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00287349032468824!GO:0008017;microtubule binding;0.00288072723075657!GO:0004843;ubiquitin-specific protease activity;0.00291849118693681!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00294627869558828!GO:0004532;exoribonuclease activity;0.00316638991764826!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00316638991764826!GO:0042393;histone binding;0.00326207654940649!GO:0009124;nucleoside monophosphate biosynthetic process;0.00332380218381614!GO:0009123;nucleoside monophosphate metabolic process;0.00332380218381614!GO:0043066;negative regulation of apoptosis;0.00351738588200671!GO:0006417;regulation of translation;0.00361036552519711!GO:0009303;rRNA transcription;0.00368737538013104!GO:0051053;negative regulation of DNA metabolic process;0.00369557887593762!GO:0022411;cellular component disassembly;0.00390584055379559!GO:0006284;base-excision repair;0.00392365410007276!GO:0006007;glucose catabolic process;0.00392365410007276!GO:0019843;rRNA binding;0.00397909630781932!GO:0006118;electron transport;0.00411995925563699!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00425891796642163!GO:0015002;heme-copper terminal oxidase activity;0.00425891796642163!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00425891796642163!GO:0004129;cytochrome-c oxidase activity;0.00425891796642163!GO:0003887;DNA-directed DNA polymerase activity;0.00445583362285858!GO:0050789;regulation of biological process;0.00445583362285858!GO:0000097;sulfur amino acid biosynthetic process;0.00446706840783496!GO:0030118;clathrin coat;0.00452033537283913!GO:0009892;negative regulation of metabolic process;0.00459454856140721!GO:0006378;mRNA polyadenylation;0.0046045216391904!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00465033460113493!GO:0042158;lipoprotein biosynthetic process;0.00490939836333565!GO:0000726;non-recombinational repair;0.0049537678646219!GO:0004221;ubiquitin thiolesterase activity;0.00504848099659789!GO:0032984;macromolecular complex disassembly;0.00507516674081368!GO:0008234;cysteine-type peptidase activity;0.0051263636436702!GO:0000082;G1/S transition of mitotic cell cycle;0.00512994035331153!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00525615657077797!GO:0005732;small nucleolar ribonucleoprotein complex;0.00529625748633607!GO:0030133;transport vesicle;0.00529631091219548!GO:0051789;response to protein stimulus;0.00544533042046636!GO:0006986;response to unfolded protein;0.00544533042046636!GO:0016790;thiolester hydrolase activity;0.00558184252515401!GO:0005680;anaphase-promoting complex;0.00567607281717686!GO:0016584;nucleosome positioning;0.00567607281717686!GO:0006950;response to stress;0.00578060832213268!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00580626012273878!GO:0042054;histone methyltransferase activity;0.00608774662789744!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00632717520422924!GO:0044450;microtubule organizing center part;0.00689105604130554!GO:0009067;aspartate family amino acid biosynthetic process;0.00690076912532281!GO:0005832;chaperonin-containing T-complex;0.00697877646340272!GO:0000080;G1 phase of mitotic cell cycle;0.00699757222032213!GO:0051287;NAD binding;0.00707124829300933!GO:0043022;ribosome binding;0.00712472079461937!GO:0016407;acetyltransferase activity;0.00737705056305972!GO:0043241;protein complex disassembly;0.00742128134502671!GO:0000287;magnesium ion binding;0.00756343086515218!GO:0045045;secretory pathway;0.00758753444230196!GO:0006595;polyamine metabolic process;0.00758753444230196!GO:0042168;heme metabolic process;0.00759496302465051!GO:0046966;thyroid hormone receptor binding;0.00777087154245219!GO:0009161;ribonucleoside monophosphate metabolic process;0.00790829703539224!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00790829703539224!GO:0009308;amine metabolic process;0.00798561415544574!GO:0008287;protein serine/threonine phosphatase complex;0.00826933017730543!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0083123859078678!GO:0003746;translation elongation factor activity;0.00831798796845332!GO:0045449;regulation of transcription;0.00839100114164543!GO:0000781;chromosome, telomeric region;0.00853792627241428!GO:0006360;transcription from RNA polymerase I promoter;0.00854593690735331!GO:0005773;vacuole;0.00854593690735331!GO:0000077;DNA damage checkpoint;0.00860052977038368!GO:0008652;amino acid biosynthetic process;0.00881670889237279!GO:0009116;nucleoside metabolic process;0.0088610724101737!GO:0008139;nuclear localization sequence binding;0.0090520544892631!GO:0030658;transport vesicle membrane;0.00905403730981218!GO:0030176;integral to endoplasmic reticulum membrane;0.0095338946149136!GO:0008170;N-methyltransferase activity;0.00969369780316352!GO:0044262;cellular carbohydrate metabolic process;0.00978492974614053!GO:0006406;mRNA export from nucleus;0.00979355552807373!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.00991723101558713!GO:0045039;protein import into mitochondrial inner membrane;0.00991723101558713!GO:0004540;ribonuclease activity;0.00998944928479932!GO:0007021;tubulin folding;0.0101437980052079!GO:0008180;signalosome;0.0108226005466195!GO:0015036;disulfide oxidoreductase activity;0.011062643023854!GO:0009066;aspartate family amino acid metabolic process;0.0111997271532091!GO:0006807;nitrogen compound metabolic process;0.0112761995108073!GO:0006643;membrane lipid metabolic process;0.0114462530787403!GO:0016126;sterol biosynthetic process;0.0116018566980758!GO:0000792;heterochromatin;0.0116428082781677!GO:0035258;steroid hormone receptor binding;0.0116716759595671!GO:0030145;manganese ion binding;0.0120658744104805!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0123109074571332!GO:0005525;GTP binding;0.0126012879046919!GO:0046128;purine ribonucleoside metabolic process;0.0126557916312475!GO:0042278;purine nucleoside metabolic process;0.0126557916312475!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0127801440485077!GO:0045786;negative regulation of progression through cell cycle;0.012829122258155!GO:0035267;NuA4 histone acetyltransferase complex;0.0129412054187943!GO:0043189;H4/H2A histone acetyltransferase complex;0.0130435604564523!GO:0030660;Golgi-associated vesicle membrane;0.0132359258872985!GO:0043488;regulation of mRNA stability;0.0134741101822397!GO:0043487;regulation of RNA stability;0.0134741101822397!GO:0000175;3'-5'-exoribonuclease activity;0.013589169579181!GO:0032039;integrator complex;0.0136176106195883!GO:0006376;mRNA splice site selection;0.0140838341092391!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0140838341092391!GO:0030132;clathrin coat of coated pit;0.0143488930626969!GO:0030119;AP-type membrane coat adaptor complex;0.0144414785917025!GO:0007346;regulation of progression through mitotic cell cycle;0.014455146540399!GO:0033116;ER-Golgi intermediate compartment membrane;0.0145318072293188!GO:0008156;negative regulation of DNA replication;0.0147138470277634!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0148060516297675!GO:0030663;COPI coated vesicle membrane;0.0150366732394364!GO:0030126;COPI vesicle coat;0.0150366732394364!GO:0004523;ribonuclease H activity;0.015490687947962!GO:0044454;nuclear chromosome part;0.0155235299706036!GO:0048487;beta-tubulin binding;0.0155456890917175!GO:0006733;oxidoreduction coenzyme metabolic process;0.0156534958595335!GO:0007010;cytoskeleton organization and biogenesis;0.0156853905435927!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0157606548962153!GO:0000209;protein polyubiquitination;0.0158417858265948!GO:0031326;regulation of cellular biosynthetic process;0.0160531774857767!GO:0006672;ceramide metabolic process;0.0165790474100067!GO:0003725;double-stranded RNA binding;0.0165790474100067!GO:0000793;condensed chromosome;0.0167278658375089!GO:0000339;RNA cap binding;0.0169511200174798!GO:0008144;drug binding;0.0169511200174798!GO:0031577;spindle checkpoint;0.0170690541103667!GO:0005663;DNA replication factor C complex;0.017181498648376!GO:0030218;erythrocyte differentiation;0.017181498648376!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0172984643308104!GO:0007004;telomere maintenance via telomerase;0.0172984643308104!GO:0006220;pyrimidine nucleotide metabolic process;0.0173415834823074!GO:0008173;RNA methyltransferase activity;0.0173563181165239!GO:0000323;lytic vacuole;0.017362661271098!GO:0005764;lysosome;0.017362661271098!GO:0016279;protein-lysine N-methyltransferase activity;0.0175275094008529!GO:0018024;histone-lysine N-methyltransferase activity;0.0175275094008529!GO:0016278;lysine N-methyltransferase activity;0.0175275094008529!GO:0000910;cytokinesis;0.0176645328443775!GO:0030134;ER to Golgi transport vesicle;0.017672400316241!GO:0003756;protein disulfide isomerase activity;0.017672400316241!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.017672400316241!GO:0000118;histone deacetylase complex;0.0176957820264799!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0177483405626436!GO:0008097;5S rRNA binding;0.0177685829142367!GO:0022406;membrane docking;0.0179439283721203!GO:0048278;vesicle docking;0.0179439283721203!GO:0030131;clathrin adaptor complex;0.0180472591984702!GO:0003702;RNA polymerase II transcription factor activity;0.0181033002542531!GO:0040029;regulation of gene expression, epigenetic;0.0185511471610145!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0187334452543964!GO:0006695;cholesterol biosynthetic process;0.0189367575816334!GO:0001522;pseudouridine synthesis;0.0189953469894569!GO:0016835;carbon-oxygen lyase activity;0.019121217816347!GO:0043631;RNA polyadenylation;0.0194957842939128!GO:0004722;protein serine/threonine phosphatase activity;0.0197715911901787!GO:0046365;monosaccharide catabolic process;0.0197755654307585!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0197755654307585!GO:0008536;Ran GTPase binding;0.0199583659753936!GO:0005666;DNA-directed RNA polymerase III complex;0.0201891724331691!GO:0016018;cyclosporin A binding;0.0203642568784396!GO:0046519;sphingoid metabolic process;0.0206138469252307!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0211296064301474!GO:0010257;NADH dehydrogenase complex assembly;0.0211296064301474!GO:0033108;mitochondrial respiratory chain complex assembly;0.0211296064301474!GO:0046164;alcohol catabolic process;0.0216961498885974!GO:0000123;histone acetyltransferase complex;0.0217623752022691!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0220388794137941!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0220388794137941!GO:0030508;thiol-disulfide exchange intermediate activity;0.0220388794137941!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0221791541424331!GO:0006415;translational termination;0.0221921314189679!GO:0042026;protein refolding;0.0222328049936508!GO:0006278;RNA-dependent DNA replication;0.0223185743876334!GO:0030515;snoRNA binding;0.0226549478413119!GO:0017056;structural constituent of nuclear pore;0.0229376002405365!GO:0051318;G1 phase;0.0229812782864378!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0229812782864378!GO:0016408;C-acyltransferase activity;0.0230762426728429!GO:0005658;alpha DNA polymerase:primase complex;0.0232510650030733!GO:0006301;postreplication repair;0.0232517617748734!GO:0000086;G2/M transition of mitotic cell cycle;0.0233343939248883!GO:0046112;nucleobase biosynthetic process;0.0235196885991167!GO:0051297;centrosome organization and biogenesis;0.0236823464991148!GO:0031023;microtubule organizing center organization and biogenesis;0.0236823464991148!GO:0012506;vesicle membrane;0.0242766941527571!GO:0030496;midbody;0.0246452524624892!GO:0003923;GPI-anchor transamidase activity;0.0246802896475189!GO:0016255;attachment of GPI anchor to protein;0.0246802896475189!GO:0042765;GPI-anchor transamidase complex;0.0246802896475189!GO:0030659;cytoplasmic vesicle membrane;0.0247421139184331!GO:0005652;nuclear lamina;0.0252663825708632!GO:0006904;vesicle docking during exocytosis;0.0253291471774729!GO:0030137;COPI-coated vesicle;0.0259738366761425!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0263347615570642!GO:0030262;apoptotic nuclear changes;0.0263347615570642!GO:0000930;gamma-tubulin complex;0.0267264539584339!GO:0006607;NLS-bearing substrate import into nucleus;0.0269422789573083!GO:0051656;establishment of organelle localization;0.0269724789003774!GO:0009113;purine base biosynthetic process;0.0275010523430997!GO:0048523;negative regulation of cellular process;0.0279777573007491!GO:0006541;glutamine metabolic process;0.0280276321994356!GO:0030521;androgen receptor signaling pathway;0.0281266880330778!GO:0031902;late endosome membrane;0.0281291076943313!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0286219603327997!GO:0031625;ubiquitin protein ligase binding;0.029012793513664!GO:0006644;phospholipid metabolic process;0.0293757242488851!GO:0031371;ubiquitin conjugating enzyme complex;0.0294406509359848!GO:0005784;translocon complex;0.0298300595233678!GO:0030518;steroid hormone receptor signaling pathway;0.0305857808650205!GO:0006355;regulation of transcription, DNA-dependent;0.0307137102413966!GO:0019320;hexose catabolic process;0.0316622942472508!GO:0003893;epsilon DNA polymerase activity;0.031712602531647!GO:0004659;prenyltransferase activity;0.031712602531647!GO:0009396;folic acid and derivative biosynthetic process;0.0320844529405487!GO:0008213;protein amino acid alkylation;0.0321975697600312!GO:0006479;protein amino acid methylation;0.0321975697600312!GO:0031901;early endosome membrane;0.032298252545042!GO:0004526;ribonuclease P activity;0.0323721396342011!GO:0044433;cytoplasmic vesicle part;0.0329907716249823!GO:0008320;protein transmembrane transporter activity;0.0332334137580391!GO:0004674;protein serine/threonine kinase activity;0.0332723594067374!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0334892963154688!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0334892963154688!GO:0009126;purine nucleoside monophosphate metabolic process;0.0334892963154688!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0334892963154688!GO:0006379;mRNA cleavage;0.0335345061795833!GO:0006303;double-strand break repair via nonhomologous end joining;0.0336333825385085!GO:0006096;glycolysis;0.034300098350914!GO:0006767;water-soluble vitamin metabolic process;0.0343568167522881!GO:0016585;chromatin remodeling complex;0.0345102198961024!GO:0065009;regulation of a molecular function;0.0345102198961024!GO:0006308;DNA catabolic process;0.0346699563306411!GO:0006610;ribosomal protein import into nucleus;0.0349984550464987!GO:0050000;chromosome localization;0.0351523499907807!GO:0051303;establishment of chromosome localization;0.0351523499907807!GO:0006555;methionine metabolic process;0.0356575331616607!GO:0004549;tRNA-specific ribonuclease activity;0.0362058966464396!GO:0009081;branched chain family amino acid metabolic process;0.0363362543987107!GO:0046914;transition metal ion binding;0.0366806546196668!GO:0016180;snRNA processing;0.0367627406015273!GO:0016073;snRNA metabolic process;0.0367627406015273!GO:0009119;ribonucleoside metabolic process;0.0380742109516888!GO:0019206;nucleoside kinase activity;0.0388282372781628!GO:0022884;macromolecule transmembrane transporter activity;0.0390921838158076!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0390921838158076!GO:0030127;COPII vesicle coat;0.0392630088167106!GO:0012507;ER to Golgi transport vesicle membrane;0.0392630088167106!GO:0016481;negative regulation of transcription;0.0392630088167106!GO:0004239;methionyl aminopeptidase activity;0.0393532270282062!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0400694695394762!GO:0004300;enoyl-CoA hydratase activity;0.0401248619921543!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.0402688321406409!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.0402688321406409!GO:0045267;proton-transporting ATP synthase, catalytic core;0.0402688321406409!GO:0016836;hydro-lyase activity;0.0403969630679885!GO:0044448;cell cortex part;0.0405262831196318!GO:0032040;small subunit processome;0.0413061848829059!GO:0030677;ribonuclease P complex;0.0416205098264823!GO:0042809;vitamin D receptor binding;0.0416783122501867!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0419459163374016!GO:0031647;regulation of protein stability;0.0421137824728274!GO:0044438;microbody part;0.0421516816969098!GO:0044439;peroxisomal part;0.0421516816969098!GO:0042769;DNA damage response, detection of DNA damage;0.0424493009166916!GO:0030433;ER-associated protein catabolic process;0.042586992501475!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.042586992501475!GO:0030911;TPR domain binding;0.0430269493169227!GO:0016453;C-acetyltransferase activity;0.0439499879079466!GO:0042770;DNA damage response, signal transduction;0.0440241020094228!GO:0051320;S phase;0.044139391324607!GO:0001832;blastocyst growth;0.0445274311891239!GO:0000305;response to oxygen radical;0.0452539585681528!GO:0008632;apoptotic program;0.04531854149942!GO:0005938;cell cortex;0.0458598069010554!GO:0009889;regulation of biosynthetic process;0.0458598069010554!GO:0009086;methionine biosynthetic process;0.0463822175954265!GO:0004519;endonuclease activity;0.0465090149767821!GO:0030140;trans-Golgi network transport vesicle;0.0471406094321957!GO:0006740;NADPH regeneration;0.0471667242388066!GO:0006098;pentose-phosphate shunt;0.0471667242388066!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0475033382146444!GO:0005869;dynactin complex;0.047601567680558!GO:0033170;DNA-protein loading ATPase activity;0.0479739129041954!GO:0003689;DNA clamp loader activity;0.0479739129041954!GO:0030261;chromosome condensation;0.0480500050074042!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0484968226580378!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0484968226580378!GO:0016569;covalent chromatin modification;0.0484968226580378!GO:0045815;positive regulation of gene expression, epigenetic;0.0485996227711774!GO:0004815;aspartate-tRNA ligase activity;0.0494307334515991!GO:0006422;aspartyl-tRNA aminoacylation;0.0494307334515991
|sample_id=10454
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=GATA6:4.13578433939;POU2F1..3:2.86811599693;ZBTB16:1.98452330772;MYB:1.96490103867;PITX1..3:1.85149327002;POU3F1..4:1.80143736095;E2F1..5:1.70225764206;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.517146375;ELK1,4_GABP{A,B1}:1.4244950614;OCT4_SOX2{dimer}:1.40458503734;YY1:1.35590992116;CDX1,2,4:1.31379977343;POU1F1:1.28342982732;STAT5{A,B}:1.19007983168;HOX{A6,A7,B6,B7}:1.16545871229;NKX6-1,2:1.15918934169;PBX1:1.10430768053;ZNF143:1.09091861449;RORA:1.0762526408;HOXA9_MEIS1:1.06731147063;NR5A1,2:1.03293388257;ADNP_IRX_SIX_ZHX:1.01177256905;TEF:0.946090988139;NR6A1:0.915258547821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.868725906037;NKX2-1,4:0.865009263834;HOX{A5,B5}:0.863503369061;RBPJ:0.838812526801;IKZF2:0.826134377099;NRF1:0.810666730475;NR1H4:0.809240863266;NANOG:0.799174072414;FOXP1:0.79767165923;NFIX:0.795790217201;PAX8:0.785385346489;ALX1:0.737337885862;PRRX1,2:0.734347111946;NFY{A,B,C}:0.667482515434;EVI1:0.660366440898;HES1:0.640511739069;CRX:0.612074236299;CUX2:0.572648386608;FOXD3:0.517369254544;HOX{A4,D4}:0.492022318551;AHR_ARNT_ARNT2:0.469382436283;bHLH_family:0.453114131597;T:0.394372744681;ARID5B:0.380935809076;BREu{core}:0.374853177515;FOXQ1:0.323166654071;NFE2:0.314617402783;TOPORS:0.248231838334;FOXA2:0.242958524744;AIRE:0.240267174182;PAX4:0.232573608216;ZNF384:0.221817971827;FOX{I1,J2}:0.210261748504;VSX1,2:0.178646389194;PDX1:0.156053449384;ESRRA:0.152642996149;PAX3,7:0.120666756104;PAX6:0.11714561212;LEF1_TCF7_TCF7L1,2:0.0893170737461;NKX3-1:0.0803809909613;SOX{8,9,10}:0.068925259062;SNAI1..3:0.0634495154455;HBP1_HMGB_SSRP1_UBTF:0.0595928962816;NKX3-2:0.0580988459766;NANOG{mouse}:0.0415932287155;NKX2-3_NKX2-5:0.0145112482041;FOX{F1,F2,J1}:-0.00139392708075;AR:-0.0102363804609;SPZ1:-0.0303863455446;ZNF148:-0.0363034043188;ELF1,2,4:-0.061741096431;POU6F1:-0.062226132507;TFDP1:-0.0697347829317;NFE2L2:-0.085790621621;POU5F1:-0.095596915209;SMAD1..7,9:-0.139075476249;ZEB1:-0.151245550087;HNF4A_NR2F1,2:-0.169798011844;ONECUT1,2:-0.181402049279;GFI1:-0.185550599727;MEF2{A,B,C,D}:-0.199167019615;CDC5L:-0.207792202501;IKZF1:-0.245155345237;MYBL2:-0.248510394195;STAT1,3:-0.255833093892;HNF1A:-0.264442096108;EN1,2:-0.284620031765;TLX2:-0.304265359335;ATF5_CREB3:-0.316285163579;DBP:-0.325908863193;SPIB:-0.346209691425;RUNX1..3:-0.351118359261;LHX3,4:-0.362156845992;LMO2:-0.372861780598;HAND1,2:-0.37411538648;CREB1:-0.382532944102;BACH2:-0.38729220069;RXRA_VDR{dimer}:-0.394566906183;FOXP3:-0.405614393365;HLF:-0.409422658132;PAX2:-0.425312421348;SOX5:-0.428504636966;GATA4:-0.438900021105;TGIF1:-0.442100507975;RFX1:-0.44779843233;MYOD1:-0.448580683879;FOSL2:-0.457617663395;NFKB1_REL_RELA:-0.480100577424;NKX2-2,8:-0.480287340372;ATF4:-0.49153817824;UFEwm:-0.496103818043;FOS_FOS{B,L1}_JUN{B,D}:-0.507056277535;FOXN1:-0.512019248007;PPARG:-0.513018451753;CEBPA,B_DDIT3:-0.519635304704;STAT2,4,6:-0.528538981991;SPI1:-0.557461804359;SOX2:-0.577293056758;XBP1:-0.577664908273;RFX2..5_RFXANK_RFXAP:-0.580786453468;HSF1,2:-0.608495773365;MAFB:-0.616781607228;NFE2L1:-0.633144578948;REST:-0.641619097076;KLF4:-0.650062758326;SOX17:-0.651994131529;ATF2:-0.664171713367;NFIL3:-0.674165745799;PAX1,9:-0.676133091525;BPTF:-0.677120174913;ZNF238:-0.708421772207;ETS1,2:-0.717396043888;TBP:-0.739571920657;DMAP1_NCOR{1,2}_SMARC:-0.757774390413;FOX{D1,D2}:-0.774161378695;TP53:-0.784627587236;NHLH1,2:-0.801301368729;ZFP161:-0.820021282512;ZBTB6:-0.878703141028;NFATC1..3:-0.878895693034;TEAD1:-0.931962421633;RXR{A,B,G}:-0.966087101245;ZIC1..3:-0.985578435193;SRF:-1.01639515517;GTF2A1,2:-1.04856091136;IRF7:-1.0495050002;GTF2I:-1.05721828069;MED-1{core}:-1.06463649;ZNF423:-1.07733456439;RREB1:-1.15095810994;JUN:-1.16329834785;IRF1,2:-1.16377220814;FOXL1:-1.17157307274;MYFfamily:-1.1925347013;ALX4:-1.20423368473;TAL1_TCF{3,4,12}:-1.22283875272;SREBF1,2:-1.22849518445;GCM1,2:-1.2316077313;HMX1:-1.2496928181;FOXM1:-1.26581724126;EGR1..3:-1.26779556341;MZF1:-1.27325150132;GFI1B:-1.27353385051;EP300:-1.28646657906;HMGA1,2:-1.31394841899;HIC1:-1.33353413386;NR3C1:-1.34997598281;TFAP4:-1.35676257749;HIF1A:-1.36916744698;GZF1:-1.37448433429;SP1:-1.3992137535;ATF6:-1.4289685405;PRDM1:-1.4302425512;FOXO1,3,4:-1.44339597679;PATZ1:-1.46680389057;ESR1:-1.49243139976;TBX4,5:-1.51070638635;TLX1..3_NFIC{dimer}:-1.56362223761;GLI1..3:-1.61199138628;EBF1:-1.64597189243;MAZ:-1.64915378836;MTE{core}:-1.68071203442;XCPE1{core}:-1.7324836724;TFAP2{A,C}:-1.73671070969;MTF1:-1.74626530715;PAX5:-1.79010600677;TFAP2B:-1.91486743546;TFCP2:-2.39796210592
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10454-106G4;search_select_hide=table117:FF:10454-106G4
}}
}}

Latest revision as of 14:03, 3 June 2020

Name:chronic myelogenous leukemia cell line:K562
Species:Human (Homo sapiens)
Library ID:CNhs11250
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
age53
cell typegranulocyte
cell lineK562
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004875
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11250 CAGE DRX007858 DRR008730
Accession ID Hg19

Library idBAMCTSS
CNhs11250 DRZ000155 DRZ001540
Accession ID Hg38

Library idBAMCTSS
CNhs11250 DRZ011505 DRZ012890
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10060downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0646
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.684
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0.943
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.00612
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.211
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0629
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.157
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.578
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00205
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.567
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0031
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0.714
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11250

Jaspar motifP-value
MA0002.20.852
MA0003.10.476
MA0004.10.164
MA0006.10.254
MA0007.10.393
MA0009.10.327
MA0014.10.426
MA0017.10.395
MA0018.20.295
MA0019.10.352
MA0024.14.81614e-6
MA0025.10.117
MA0027.10.678
MA0028.11.55444e-4
MA0029.10.0292
MA0030.10.315
MA0031.10.628
MA0035.22.48374e-21
MA0038.10.639
MA0039.20.686
MA0040.10.147
MA0041.10.152
MA0042.10.324
MA0043.10.0934
MA0046.10.142
MA0047.20.863
MA0048.10.209
MA0050.11.85214e-6
MA0051.16.41325e-6
MA0052.10.011
MA0055.10.00407
MA0057.10.752
MA0058.10.0708
MA0059.15.89754e-4
MA0060.11.15019e-4
MA0061.10.642
MA0062.21.67594e-4
MA0065.20.0405
MA0066.10.367
MA0067.10.776
MA0068.10.0812
MA0069.10.508
MA0070.10.981
MA0071.10.149
MA0072.10.0393
MA0073.10.938
MA0074.10.254
MA0076.11.39276e-5
MA0077.10.283
MA0078.10.486
MA0079.20.128
MA0080.25.01724e-4
MA0081.10.863
MA0083.10.149
MA0084.10.37
MA0087.10.0656
MA0088.11.7917e-4
MA0090.10.0155
MA0091.10.812
MA0092.10.728
MA0093.10.141
MA0099.20.464
MA0100.10.0723
MA0101.10.244
MA0102.20.0129
MA0103.10.38
MA0104.21.52177e-4
MA0105.10.0266
MA0106.10.449
MA0107.10.0164
MA0108.26.57215e-5
MA0111.10.106
MA0112.20.0542
MA0113.10.72
MA0114.10.0382
MA0115.10.0676
MA0116.10.00124
MA0117.10.746
MA0119.10.65
MA0122.10.765
MA0124.10.907
MA0125.10.609
MA0131.10.663
MA0135.10.0026
MA0136.10.243
MA0137.20.893
MA0138.20.889
MA0139.10.138
MA0140.12.04296e-31
MA0141.10.0152
MA0142.10.00754
MA0143.10.541
MA0144.10.79
MA0145.10.694
MA0146.10.217
MA0147.11.12605e-5
MA0148.10.643
MA0149.10.00469
MA0150.10.178
MA0152.10.711
MA0153.10.0118
MA0154.10.258
MA0155.10.494
MA0156.10.71
MA0157.10.211
MA0159.10.251
MA0160.10.0715
MA0162.10.921
MA0163.16.73292e-10
MA0164.10.915
MA0258.10.137
MA0259.10.0375



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11250

Novel motifP-value
10.00927
100.0163
1000.126
1010.273
1020.686
1030.575
1040.856
1050.958
1060.484
1070.411
1080.904
1090.0364
110.0975
1100.131
1110.135
1120.627
1130.546
1140.0173
1150.219
1160.242
1170.0195
1180.3
1190.28
120.888
1200.76
1210.658
1220.335
1230.0677
1240.171
1250.285
1260.327
1270.971
1280.424
1290.761
130.0077
1300.183
1310.485
1320.331
1330.152
1340.811
1350.281
1360.341
1370.683
1380.648
1390.152
140.76
1400.0338
1410.0157
1420.64
1430.901
1440.574
1450.475
1460.821
1470.36
1480.175
1490.244
150.235
1500.626
1510.782
1520.157
1530.577
1540.956
1550.331
1560.608
1570.393
1580.751
1590.123
160.648
1600.492
1610.174
1620.771
1630.374
1640.494
1650.662
1660.143
1670.0933
1680.619
1690.527
170.536
180.425
190.805
20.207
200.137
210.241
220.812
230.111
240.279
250.34
260.0326
270.481
280.526
290.0275
30.187
300.0726
310.74
320.197
330.0785
340.424
350.166
360.0165
370.218
380.389
390.642
40.166
400.194
410.778
420.201
430.214
440.543
450.601
460.13
470.0201
480.104
490.0176
50.264
500.953
510.861
520.266
530.483
540.91
550.455
560.868
570.0606
580.379
590.796
60.324
600.963
610.143
620.192
630.901
640.228
650.721
661.45779e-4
670.851
680.233
690.71
70.0749
700.51
710.0135
720.478
730.958
740.832
750.00456
760.317
770.681
780.0045
790.0811
80.128
800.147
810.705
820.4
830.653
840.721
850.641
860.682
870.373
880.842
890.816
90.616
900.0199
910.27
920.737
930.645
940.359
950.173
960.213
970.783
980.178
990.583



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11250


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100664 (K-562 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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