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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007886
|DRA_sample_Accession=CAGE@SAMD00005431
|accession_numbers=CAGE;DRX007992;DRR008864;DRZ000289;DRZ001674
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005431
|accession_numbers=CAGE;DRX007992;DRR008864;DRZ000289;DRZ001674;DRZ011639;DRZ013024
|accession_numbers_RNASeq=RNA-Seq;DRX057126;DRR062885;DRZ007961
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005388,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005388,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr14:57272369..57272391,-!p2@OTX2!2.91!819.46!OTX2;;chr2:16080659..16080685,+!p1@MYCN!2.84!690.84!MYCN;;chr19:48325184..48325211,+!p1@CRX!2.74!546.10!CRX;;chr2:182545234..182545252,-!p1@NEUROD1!2.50!317.29!NEUROD1;;chr14:57277178..57277203,-!p1@OTX2!2.36!228.17!OTX2;;chr2:16081912..16081931,+!p2@MYCN!2.24!173.18!MYCN;;chr14:24553835..24553850,-!p1@NRL!2.12!131.15!NRL;;chr13:72441315..72441454,-!p1@DACH1!2.07!225.17!DACH1;;chr19:3772220..3772236,-!p1@RAX2!1.99!95.91!RAX2;;chr12:66218255..66218304,+!p3@HMGA2!1.88!193.88!HMGA2;;chr5:134871645..134871660,-!p1@NEUROG1!1.83!66.52!NEUROG1;;chr12:66218598..66218645,+!p2@HMGA2!1.81!278.58!HMGA2;;chr15:76629123..76629151,+!p1@ISL2!1.81!70.32!ISL2;;chr10:69991865..69991870,-!p1@ATOH7!1.79!61.15!ATOH7;;chr2:16080635..16080650,+!p4@MYCN!1.79!60.05!MYCN;;chr14:57277098..57277116,-!p3@OTX2!1.78!59.73!OTX2;;chr18:56940611..56940660,-!p1@RAX!1.74!53.41!RAX;;chr12:66218183..66218209,+!p4@HMGA2!1.73!98.44!HMGA2;;chr16:51185172..51185197,-!p1@SALL1!1.73!52.46!SALL1;;chr12:66218212..66218244,+!p5@HMGA2!1.71!72.05!HMGA2;;chr1:216896752..216896778,-!p1@ESRRG!1.71!50.56!ESRRG;;chr2:16080823..16080836,+!p5@MYCN!1.64!42.19!MYCN;;chr13:72441074..72441172,-!p2@DACH1!1.61!39.98!DACH1;;chr9:77112244..77112262,+!p1@RORB!1.57!39.98!RORB;;chr2:16082155..16082169,+!p3@MYCN!1.57!36.50!MYCN;;chr12:54779511..54779577,-!p5@ZNF385A!1.51!31.44!ZNF385A;;chr11:63684602..63684664,-!p1@RCOR2!1.50!59.89!RCOR2;;chr12:66218573..66218596,+!p7@HMGA2!1.48!42.98!HMGA2;;chr19:3772263..3772274,-!p2@RAX2!1.48!29.07!RAX2;;chr3:52002194..52002250,-!p5@PCBP4!1.47!28.28!PCBP4;;chr3:52001448..52001478,-!p2@PCBP4!1.46!373.54!PCBP4;;chr18:74207147..74207183,-!p1@ZNF516!1.41!72.37!ZNF516;;chr9:139094988..139095012,-!p1@LHX3!1.41!24.49!LHX3;;chr18:56940663..56940691,-!p2@RAX!1.40!24.02!RAX;;chr9:139096968..139096979,-!p2@LHX3!1.37!22.44!LHX3;;chr2:239148671..239148686,-!p1@HES6!1.36!78.22!HES6;;chr15:61521495..61521506,-!p5@RORA!1.36!21.96!RORA;;chr2:45168875..45168916,+!p1@SIX3!1.33!20.23!SIX3;;chr7:1272522..1272537,+!p2@UNCX!1.32!20.07!UNCX;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.76!TCF12;;chr18:55102598..55102623,+!p1@ONECUT2!1.30!18.80!ONECUT2;;chr7:73038839..73038862,-!p1@MLXIPL!1.29!18.33!MLXIPL;;chr12:66218152..66218174,+!p10@HMGA2!1.28!19.59!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!1.27!76.00!PCBP3;;chr18:74207186..74207204,-!p3@ZNF516!1.27!25.44!ZNF516;;chr7:156803329..156803362,-!p1@MNX1!1.26!17.22!MNX1;;chr1:3569072..3569093,+!p1@TP73!1.25!16.91!TP73;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.75!HIF3A;;chr7:1272500..1272513,+!p1@UNCX!1.25!16.59!UNCX;;chr2:60780753..60780800,-!p1@BCL11A!1.24!79.95!BCL11A;;chr6:20402102..20402152,+!p1@E2F3!1.21!61.63!E2F3;;chr12:66218003..66218018,+!p9@HMGA2!1.21!18.33!HMGA2;;chr1:164528687..164528711,+!p6@PBX1!1.21!17.54!PBX1;;chr9:14314131..14314147,-!p2@NFIB!1.20!82.64!NFIB;;chr20:20348740..20348757,+!p1@INSM1!1.20!15.01!INSM1;;chr1:244214577..244214593,+!p1@ZNF238!1.20!14.85!ZNF238;;chr8:40755333..40755352,-!p1@ZMAT4!1.19!14.38!ZMAT4;;chr19:20188776..20188826,+!p1@ZNF90!1.18!37.61!ZNF90;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.65!PITX1;;chr1:216896780..216896800,-!p2@ESRRG!1.18!14.06!ESRRG;;chr9:77112225..77112238,+!p2@RORB!1.15!13.12!RORB;;chr2:60780607..60780624,-!p2@BCL11A!1.14!39.50!BCL11A;;chr1:75602043..75602093,+!p1@LHX8!1.13!12.48!LHX8;;chr17:42295777..42295816,-!p7@UBTF!1.12!14.85!UBTF;;chr19:53496768..53496799,-!p1@ZNF702P!1.11!18.33!ZNF702P;;chr15:72102881..72102925,+!p1@NR2E3!1.11!12.01!NR2E3;;chr13:100623375..100623425,-!p1@ZIC5!1.11!12.01!ZIC5;;chr18:55102628..55102646,+!p2@ONECUT2!1.11!11.85!ONECUT2;;chr18:74207227..74207238,-!p5@ZNF516!1.09!11.22!ZNF516;;chr1:221052733..221052749,+!p2@HLX!1.08!14.54!HLX;;chr1:10856694..10856715,-!p3@CASZ1!1.08!10.90!CASZ1;;chr7:96634850..96634874,+!p3@DLX6!1.08!10.90!DLX6;;chr12:54393880..54393962,+!p1@HOXC9!1.08!10.90!HOXC9;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.43!ZNF385A;;chr12:66218378..66218401,+!p6@HMGA2!1.06!16.43!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!1.06!12.96!HOXC4;;chr2:60778035..60778060,-!p4@BCL11A!1.06!12.48!BCL11A;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.43!HMGA2;;chr19:23433144..23433204,-!p1@ZNF724P!1.05!46.77!ZNF724P;;chr1:10856665..10856683,-!p4@CASZ1!1.05!10.27!CASZ1;;chr2:5832508..5832524,+!p1@SOX11!1.05!10.27!SOX11;;chr1:153940354..153940395,+!p1@CREB3L4!1.04!41.24!CREB3L4;;chr12:66218443..66218461,+!p8@HMGA2!1.04!12.80!HMGA2;;chr10:48355030..48355090,+!p1@ZNF488!1.03!12.48!ZNF488;;chr14:21562671..21562702,-!p8@ZNF219!1.03!9.64!ZNF219;;chr8:11561684..11561751,+!p1@GATA4!1.03!9.64!GATA4;;chr1:247171347..247171366,-!p2@ZNF695!1.01!16.91!ZNF695;;chr9:139095030..139095040,-!p4@LHX3!1.01!9.32!LHX3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.01!9.16!ZBED1;;chr19:3772249..3772252,-!p3@RAX2!1.01!9.16!RAX2;;chr2:166326200..166326216,+!p1@CSRNP3!1.00!13.43!CSRNP3;;chr19:11750566..11750627,+!p1@ZNF833P!1.00!12.33!ZNF833P;;chr13:100634031..100634045,+!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|expression_enrichment_score=chr14:57272369..57272391,-!p2@OTX2!2.91!819.46!OTX2;;chr2:16080659..16080685,+!p1@MYCN!2.84!690.84!MYCN;;chr19:48325184..48325211,+!p1@CRX!2.74!546.10!CRX;;chr2:182545234..182545252,-!p1@NEUROD1!2.50!317.29!NEUROD1;;chr14:57277178..57277203,-!p1@OTX2!2.36!228.17!OTX2;;chr2:16081912..16081931,+!p2@MYCN!2.24!173.18!MYCN;;chr14:24553835..24553850,-!p1@NRL!2.12!131.15!NRL;;chr13:72441315..72441454,-!p1@DACH1!2.07!225.17!DACH1;;chr19:3772220..3772236,-!p1@RAX2!1.99!95.91!RAX2;;chr12:66218255..66218304,+!p3@HMGA2!1.88!193.88!HMGA2;;chr5:134871645..134871660,-!p1@NEUROG1!1.83!66.52!NEUROG1;;chr12:66218598..66218645,+!p2@HMGA2!1.81!278.58!HMGA2;;chr15:76629123..76629151,+!p1@ISL2!1.81!70.32!ISL2;;chr10:69991865..69991870,-!p1@ATOH7!1.79!61.15!ATOH7;;chr2:16080635..16080650,+!p4@MYCN!1.79!60.05!MYCN;;chr14:57277098..57277116,-!p3@OTX2!1.78!59.73!OTX2;;chr18:56940611..56940660,-!p1@RAX!1.74!53.41!RAX;;chr12:66218183..66218209,+!p4@HMGA2!1.73!98.44!HMGA2;;chr16:51185172..51185197,-!p1@SALL1!1.73!52.46!SALL1;;chr12:66218212..66218244,+!p5@HMGA2!1.71!72.05!HMGA2;;chr1:216896752..216896778,-!p1@ESRRG!1.71!50.56!ESRRG;;chr2:16080823..16080836,+!p5@MYCN!1.64!42.19!MYCN;;chr13:72441074..72441172,-!p2@DACH1!1.61!39.98!DACH1;;chr9:77112244..77112262,+!p1@RORB!1.57!39.98!RORB;;chr2:16082155..16082169,+!p3@MYCN!1.57!36.50!MYCN;;chr12:54779511..54779577,-!p5@ZNF385A!1.51!31.44!ZNF385A;;chr11:63684602..63684664,-!p1@RCOR2!1.50!59.89!RCOR2;;chr12:66218573..66218596,+!p7@HMGA2!1.48!42.98!HMGA2;;chr19:3772263..3772274,-!p2@RAX2!1.48!29.07!RAX2;;chr3:52002194..52002250,-!p5@PCBP4!1.47!28.28!PCBP4;;chr3:52001448..52001478,-!p2@PCBP4!1.46!373.54!PCBP4;;chr18:74207147..74207183,-!p1@ZNF516!1.41!72.37!ZNF516;;chr9:139094988..139095012,-!p1@LHX3!1.41!24.49!LHX3;;chr18:56940663..56940691,-!p2@RAX!1.40!24.02!RAX;;chr9:139096968..139096979,-!p2@LHX3!1.37!22.44!LHX3;;chr2:239148671..239148686,-!p1@HES6!1.36!78.22!HES6;;chr15:61521495..61521506,-!p5@RORA!1.36!21.96!RORA;;chr2:45168875..45168916,+!p1@SIX3!1.33!20.23!SIX3;;chr7:1272522..1272537,+!p2@UNCX!1.32!20.07!UNCX;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.76!TCF12;;chr18:55102598..55102623,+!p1@ONECUT2!1.30!18.80!ONECUT2;;chr7:73038839..73038862,-!p1@MLXIPL!1.29!18.33!MLXIPL;;chr12:66218152..66218174,+!p10@HMGA2!1.28!19.59!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!1.27!76.00!PCBP3;;chr18:74207186..74207204,-!p3@ZNF516!1.27!25.44!ZNF516;;chr7:156803329..156803362,-!p1@MNX1!1.26!17.22!MNX1;;chr1:3569072..3569093,+!p1@TP73!1.25!16.91!TP73;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.75!HIF3A;;chr7:1272500..1272513,+!p1@UNCX!1.25!16.59!UNCX;;chr2:60780753..60780800,-!p1@BCL11A!1.24!79.95!BCL11A;;chr6:20402102..20402152,+!p1@E2F3!1.21!61.63!E2F3;;chr12:66218003..66218018,+!p9@HMGA2!1.21!18.33!HMGA2;;chr1:164528687..164528711,+!p6@PBX1!1.21!17.54!PBX1;;chr9:14314131..14314147,-!p2@NFIB!1.20!82.64!NFIB;;chr20:20348740..20348757,+!p1@INSM1!1.20!15.01!INSM1;;chr1:244214577..244214593,+!p1@ZNF238!1.20!14.85!ZNF238;;chr8:40755333..40755352,-!p1@ZMAT4!1.19!14.38!ZMAT4;;chr19:20188776..20188826,+!p1@ZNF90!1.18!37.61!ZNF90;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.65!PITX1;;chr1:216896780..216896800,-!p2@ESRRG!1.18!14.06!ESRRG;;chr9:77112225..77112238,+!p2@RORB!1.15!13.12!RORB;;chr2:60780607..60780624,-!p2@BCL11A!1.14!39.50!BCL11A;;chr1:75602043..75602093,+!p1@LHX8!1.13!12.48!LHX8;;chr17:42295777..42295816,-!p7@UBTF!1.12!14.85!UBTF;;chr19:53496768..53496799,-!p1@ZNF702P!1.11!18.33!ZNF702P;;chr15:72102881..72102925,+!p1@NR2E3!1.11!12.01!NR2E3;;chr13:100623375..100623425,-!p1@ZIC5!1.11!12.01!ZIC5;;chr18:55102628..55102646,+!p2@ONECUT2!1.11!11.85!ONECUT2;;chr18:74207227..74207238,-!p5@ZNF516!1.09!11.22!ZNF516;;chr1:221052733..221052749,+!p2@HLX!1.08!14.54!HLX;;chr1:10856694..10856715,-!p3@CASZ1!1.08!10.90!CASZ1;;chr7:96634850..96634874,+!p3@DLX6!1.08!10.90!DLX6;;chr12:54393880..54393962,+!p1@HOXC9!1.08!10.90!HOXC9;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.43!ZNF385A;;chr12:66218378..66218401,+!p6@HMGA2!1.06!16.43!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!1.06!12.96!HOXC4;;chr2:60778035..60778060,-!p4@BCL11A!1.06!12.48!BCL11A;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.43!HMGA2;;chr19:23433144..23433204,-!p1@ZNF724P!1.05!46.77!ZNF724P;;chr1:10856665..10856683,-!p4@CASZ1!1.05!10.27!CASZ1;;chr2:5832508..5832524,+!p1@SOX11!1.05!10.27!SOX11;;chr1:153940354..153940395,+!p1@CREB3L4!1.04!41.24!CREB3L4;;chr12:66218443..66218461,+!p8@HMGA2!1.04!12.80!HMGA2;;chr10:48355030..48355090,+!p1@ZNF488!1.03!12.48!ZNF488;;chr14:21562671..21562702,-!p8@ZNF219!1.03!9.64!ZNF219;;chr8:11561684..11561751,+!p1@GATA4!1.03!9.64!GATA4;;chr1:247171347..247171366,-!p2@ZNF695!1.01!16.91!ZNF695;;chr9:139095030..139095040,-!p4@LHX3!1.01!9.32!LHX3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.01!9.16!ZBED1;;chr19:3772249..3772252,-!p3@RAX2!1.01!9.16!RAX2;;chr2:166326200..166326216,+!p1@CSRNP3!1.00!13.43!CSRNP3;;chr19:11750566..11750627,+!p1@ZNF833P!1.00!12.33!ZNF833P;;chr13:100634031..100634045,+!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Line 40: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg38.nobarcode.ctss.bed.gz
|id=FF:10475-106I7
|id=FF:10475-106I7
|is_a=EFO:0002091;;FF:0000210;;FF:0102920
|is_a=EFO:0002091;;FF:0000210;;FF:0102920
|is_obsolete=
|is_obsolete=
|library_id=CNhs11267
|library_id=CNhs11267
|library_id_phase_based=2:CNhs11267
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10475
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10475
|name=retinoblastoma cell line:Y79
|name=retinoblastoma cell line:Y79
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11267,LSID758,release008,COMPLETED
|profile_hcage=CNhs11267,LSID758,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=cell lines
Line 88: Line 103:
|top_motifs=CRX:5.34024838077;PITX1..3:3.11970963531;VSX1,2:3.07597013701;BREu{core}:2.92601712701;NFY{A,B,C}:2.80200629733;TFDP1:2.46842749033;NANOG:2.44989885002;E2F1..5:2.17523875651;FOXP1:2.16948487994;LHX3,4:2.1268292804;TOPORS:1.97967488896;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.94830684204;POU1F1:1.90580835263;HOX{A6,A7,B6,B7}:1.885980952;NRF1:1.76024326415;ZNF143:1.7451612306;NKX2-3_NKX2-5:1.63546892954;BPTF:1.61019443039;YY1:1.56240619418;AHR_ARNT_ARNT2:1.51212194801;RREB1:1.472179173;TEF:1.44237192396;NKX6-1,2:1.40636531325;NKX2-1,4:1.22740468028;POU6F1:1.2268356829;ADNP_IRX_SIX_ZHX:1.21921322652;GFI1:1.20744127399;PRRX1,2:1.20121391087;EVI1:1.19502653013;FOXM1:1.19016243262;CDX1,2,4:1.14117759928;LEF1_TCF7_TCF7L1,2:1.06475525624;PBX1:1.05014380055;TAL1_TCF{3,4,12}:1.05007074721;STAT5{A,B}:1.03068097029;ALX1:1.02795314112;OCT4_SOX2{dimer}:0.975671362925;FOXQ1:0.968567820658;PATZ1:0.941806232354;MYB:0.933687852475;ZBTB16:0.911936833792;ELK1,4_GABP{A,B1}:0.892043063693;ARID5B:0.876945096116;FOXA2:0.869282996796;IKZF2:0.85578456984;NR6A1:0.852559111571;PAX3,7:0.849716476383;MYOD1:0.813216701152;PAX8:0.807125830335;RBPJ:0.805267490794;RFX2..5_RFXANK_RFXAP:0.803767701465;RORA:0.799681728499;ZNF384:0.798660549584;RFX1:0.780635106355;PAX1,9:0.753510844279;HOX{A4,D4}:0.745280190967;ONECUT1,2:0.725531331671;HOX{A5,B5}:0.701537436002;SOX{8,9,10}:0.689225345022;POU3F1..4:0.68641062557;ESRRA:0.680575130592;TP53:0.639334007059;ZFP161:0.577597490154;FOX{F1,F2,J1}:0.521427986574;HSF1,2:0.484062424744;SOX17:0.460682227518;PAX5:0.406051661801;KLF4:0.359916974036;FOXD3:0.354550010316;NR1H4:0.347418515392;FOX{I1,J2}:0.305146068818;LMO2:0.262424389223;HOXA9_MEIS1:0.251479193066;XCPE1{core}:0.224033957705;HIC1:0.215246646319;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.212164840026;SOX2:0.205539098943;AIRE:0.20176025964;ATF4:0.194456778531;FOXP3:0.184753739363;REST:0.172374427194;POU2F1..3:0.14714766253;CDC5L:0.141418358475;ZNF423:0.128111953269;CUX2:0.120586523876;bHLH_family:0.0953173325019;TFAP2B:0.0813398347562;SP1:0.0699212106632;NR5A1,2:0.0597599306493;EN1,2:0.0507530244051;MZF1:0.0484205718729;PAX6:0.0482378168191;GATA6:0.0267511875535;HNF1A:0.0214390768141;MED-1{core}:0.0208379063128;ZIC1..3:0.0159465914778;TGIF1:0.0143331832831;GATA4:-0.0239962186832;CREB1:-0.0291727532811;ZEB1:-0.0371340002023;SNAI1..3:-0.0418225594973;GTF2A1,2:-0.0656620627627;MYBL2:-0.104753456939;MEF2{A,B,C,D}:-0.124258145255;SOX5:-0.146417781802;EGR1..3:-0.175010737679;PDX1:-0.199076555212;UFEwm:-0.2131005781;STAT1,3:-0.216940052687;NKX2-2,8:-0.234994540143;HMGA1,2:-0.24240140256;MTE{core}:-0.274005471382;PAX4:-0.282786196449;TLX2:-0.299444056938;JUN:-0.31201709525;FOXL1:-0.314493347063;ATF5_CREB3:-0.320413969584;NFIL3:-0.353486701769;GTF2I:-0.382845556282;HNF4A_NR2F1,2:-0.40845441648;RXR{A,B,G}:-0.480820350879;POU5F1:-0.491319648815;FOX{D1,D2}:-0.50736367506;ALX4:-0.508451794728;ATF2:-0.517674632757;IKZF1:-0.52654182857;NHLH1,2:-0.546284148111;MTF1:-0.554257821358;NKX3-1:-0.555751861373;TLX1..3_NFIC{dimer}:-0.570332651332;ZBTB6:-0.588840935602;NFKB1_REL_RELA:-0.650308898878;GCM1,2:-0.650863942323;SPIB:-0.65728733217;AR:-0.693969446767;PPARG:-0.696047175066;PAX2:-0.719214227374;FOXN1:-0.736124188446;FOXO1,3,4:-0.749329894045;FOSL2:-0.75869315166;FOS_FOS{B,L1}_JUN{B,D}:-0.779940020311;GFI1B:-0.781198397988;NFE2:-0.784062286739;MAZ:-0.794400283739;SREBF1,2:-0.800819297478;PRDM1:-0.857640114888;DBP:-0.879507265805;CEBPA,B_DDIT3:-0.883567848357;RUNX1..3:-0.890457787028;HAND1,2:-0.893492268347;HMX1:-0.904300443139;BACH2:-0.96424223132;ELF1,2,4:-0.964662168834;SMAD1..7,9:-0.978302142782;NKX3-2:-0.982269858324;ZNF148:-0.993053923735;ZNF238:-0.995027904636;SPI1:-1.00382350966;EBF1:-1.00608257151;GZF1:-1.02287591165;XBP1:-1.02409357182;HLF:-1.05622997071;RXRA_VDR{dimer}:-1.06314822246;DMAP1_NCOR{1,2}_SMARC:-1.08672896933;MYFfamily:-1.0946128009;TFAP2{A,C}:-1.13657214454;NFE2L2:-1.16182643476;NR3C1:-1.22471107028;T:-1.251359968;NFE2L1:-1.26563377852;TEAD1:-1.28021126653;ETS1,2:-1.34283030823;EP300:-1.41436651574;IRF1,2:-1.47298560479;HIF1A:-1.48842936132;TFAP4:-1.51167942976;ESR1:-1.52965865774;SRF:-1.57921549831;TBP:-1.5847689947;IRF7:-1.60258591785;NFIX:-1.60849869889;HBP1_HMGB_SSRP1_UBTF:-1.73570202515;NANOG{mouse}:-1.75577250744;GLI1..3:-1.76810128719;SPZ1:-1.90462969238;STAT2,4,6:-2.07556691226;HES1:-2.20507817287;TBX4,5:-2.25464069598;ATF6:-2.26922788876;NFATC1..3:-2.2803425329;MAFB:-2.54785247448;TFCP2:-2.92927958971
|top_motifs=CRX:5.34024838077;PITX1..3:3.11970963531;VSX1,2:3.07597013701;BREu{core}:2.92601712701;NFY{A,B,C}:2.80200629733;TFDP1:2.46842749033;NANOG:2.44989885002;E2F1..5:2.17523875651;FOXP1:2.16948487994;LHX3,4:2.1268292804;TOPORS:1.97967488896;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.94830684204;POU1F1:1.90580835263;HOX{A6,A7,B6,B7}:1.885980952;NRF1:1.76024326415;ZNF143:1.7451612306;NKX2-3_NKX2-5:1.63546892954;BPTF:1.61019443039;YY1:1.56240619418;AHR_ARNT_ARNT2:1.51212194801;RREB1:1.472179173;TEF:1.44237192396;NKX6-1,2:1.40636531325;NKX2-1,4:1.22740468028;POU6F1:1.2268356829;ADNP_IRX_SIX_ZHX:1.21921322652;GFI1:1.20744127399;PRRX1,2:1.20121391087;EVI1:1.19502653013;FOXM1:1.19016243262;CDX1,2,4:1.14117759928;LEF1_TCF7_TCF7L1,2:1.06475525624;PBX1:1.05014380055;TAL1_TCF{3,4,12}:1.05007074721;STAT5{A,B}:1.03068097029;ALX1:1.02795314112;OCT4_SOX2{dimer}:0.975671362925;FOXQ1:0.968567820658;PATZ1:0.941806232354;MYB:0.933687852475;ZBTB16:0.911936833792;ELK1,4_GABP{A,B1}:0.892043063693;ARID5B:0.876945096116;FOXA2:0.869282996796;IKZF2:0.85578456984;NR6A1:0.852559111571;PAX3,7:0.849716476383;MYOD1:0.813216701152;PAX8:0.807125830335;RBPJ:0.805267490794;RFX2..5_RFXANK_RFXAP:0.803767701465;RORA:0.799681728499;ZNF384:0.798660549584;RFX1:0.780635106355;PAX1,9:0.753510844279;HOX{A4,D4}:0.745280190967;ONECUT1,2:0.725531331671;HOX{A5,B5}:0.701537436002;SOX{8,9,10}:0.689225345022;POU3F1..4:0.68641062557;ESRRA:0.680575130592;TP53:0.639334007059;ZFP161:0.577597490154;FOX{F1,F2,J1}:0.521427986574;HSF1,2:0.484062424744;SOX17:0.460682227518;PAX5:0.406051661801;KLF4:0.359916974036;FOXD3:0.354550010316;NR1H4:0.347418515392;FOX{I1,J2}:0.305146068818;LMO2:0.262424389223;HOXA9_MEIS1:0.251479193066;XCPE1{core}:0.224033957705;HIC1:0.215246646319;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.212164840026;SOX2:0.205539098943;AIRE:0.20176025964;ATF4:0.194456778531;FOXP3:0.184753739363;REST:0.172374427194;POU2F1..3:0.14714766253;CDC5L:0.141418358475;ZNF423:0.128111953269;CUX2:0.120586523876;bHLH_family:0.0953173325019;TFAP2B:0.0813398347562;SP1:0.0699212106632;NR5A1,2:0.0597599306493;EN1,2:0.0507530244051;MZF1:0.0484205718729;PAX6:0.0482378168191;GATA6:0.0267511875535;HNF1A:0.0214390768141;MED-1{core}:0.0208379063128;ZIC1..3:0.0159465914778;TGIF1:0.0143331832831;GATA4:-0.0239962186832;CREB1:-0.0291727532811;ZEB1:-0.0371340002023;SNAI1..3:-0.0418225594973;GTF2A1,2:-0.0656620627627;MYBL2:-0.104753456939;MEF2{A,B,C,D}:-0.124258145255;SOX5:-0.146417781802;EGR1..3:-0.175010737679;PDX1:-0.199076555212;UFEwm:-0.2131005781;STAT1,3:-0.216940052687;NKX2-2,8:-0.234994540143;HMGA1,2:-0.24240140256;MTE{core}:-0.274005471382;PAX4:-0.282786196449;TLX2:-0.299444056938;JUN:-0.31201709525;FOXL1:-0.314493347063;ATF5_CREB3:-0.320413969584;NFIL3:-0.353486701769;GTF2I:-0.382845556282;HNF4A_NR2F1,2:-0.40845441648;RXR{A,B,G}:-0.480820350879;POU5F1:-0.491319648815;FOX{D1,D2}:-0.50736367506;ALX4:-0.508451794728;ATF2:-0.517674632757;IKZF1:-0.52654182857;NHLH1,2:-0.546284148111;MTF1:-0.554257821358;NKX3-1:-0.555751861373;TLX1..3_NFIC{dimer}:-0.570332651332;ZBTB6:-0.588840935602;NFKB1_REL_RELA:-0.650308898878;GCM1,2:-0.650863942323;SPIB:-0.65728733217;AR:-0.693969446767;PPARG:-0.696047175066;PAX2:-0.719214227374;FOXN1:-0.736124188446;FOXO1,3,4:-0.749329894045;FOSL2:-0.75869315166;FOS_FOS{B,L1}_JUN{B,D}:-0.779940020311;GFI1B:-0.781198397988;NFE2:-0.784062286739;MAZ:-0.794400283739;SREBF1,2:-0.800819297478;PRDM1:-0.857640114888;DBP:-0.879507265805;CEBPA,B_DDIT3:-0.883567848357;RUNX1..3:-0.890457787028;HAND1,2:-0.893492268347;HMX1:-0.904300443139;BACH2:-0.96424223132;ELF1,2,4:-0.964662168834;SMAD1..7,9:-0.978302142782;NKX3-2:-0.982269858324;ZNF148:-0.993053923735;ZNF238:-0.995027904636;SPI1:-1.00382350966;EBF1:-1.00608257151;GZF1:-1.02287591165;XBP1:-1.02409357182;HLF:-1.05622997071;RXRA_VDR{dimer}:-1.06314822246;DMAP1_NCOR{1,2}_SMARC:-1.08672896933;MYFfamily:-1.0946128009;TFAP2{A,C}:-1.13657214454;NFE2L2:-1.16182643476;NR3C1:-1.22471107028;T:-1.251359968;NFE2L1:-1.26563377852;TEAD1:-1.28021126653;ETS1,2:-1.34283030823;EP300:-1.41436651574;IRF1,2:-1.47298560479;HIF1A:-1.48842936132;TFAP4:-1.51167942976;ESR1:-1.52965865774;SRF:-1.57921549831;TBP:-1.5847689947;IRF7:-1.60258591785;NFIX:-1.60849869889;HBP1_HMGB_SSRP1_UBTF:-1.73570202515;NANOG{mouse}:-1.75577250744;GLI1..3:-1.76810128719;SPZ1:-1.90462969238;STAT2,4,6:-2.07556691226;HES1:-2.20507817287;TBX4,5:-2.25464069598;ATF6:-2.26922788876;NFATC1..3:-2.2803425329;MAFB:-2.54785247448;TFCP2:-2.92927958971
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10475-106I7;search_select_hide=table117:FF:10475-106I7
}}
}}

Latest revision as of 14:26, 3 June 2020

Name:retinoblastoma cell line:Y79
Species:Human (Homo sapiens)
Library ID:CNhs11267
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexfemale
age2.5
cell typeunclassifiable
cell lineY79
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005431
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11267 CAGE DRX007992 DRR008864
Accession ID Hg19

Library idBAMCTSS
CNhs11267 DRZ000289 DRZ001674
Accession ID Hg38

Library idBAMCTSS
CNhs11267 DRZ011639 DRZ013024
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005431
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10069 RNA-Seq DRX057126 DRR062885
Accession ID Hg19

Library idBAMCTSS
RDhi10069 DRZ007961


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.183
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.692
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0637
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0649
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.154
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.186
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.19
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0.0637
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.676
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0142
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0637
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.673
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.264
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0.949
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11267

Jaspar motifP-value
MA0002.29.99127e-4
MA0003.10.225
MA0004.10.159
MA0006.10.106
MA0007.10.279
MA0009.10.571
MA0014.10.775
MA0017.10.0196
MA0018.20.129
MA0019.10.242
MA0024.18.50216e-10
MA0025.10.515
MA0027.10.569
MA0028.10.162
MA0029.10.28
MA0030.10.801
MA0031.10.989
MA0035.20.951
MA0038.10.00309
MA0039.20.991
MA0040.10.0899
MA0041.10.234
MA0042.10.4
MA0043.10.244
MA0046.10.0844
MA0047.20.17
MA0048.10.235
MA0050.11.23767e-12
MA0051.18.71117e-7
MA0052.10.0802
MA0055.10.02
MA0057.10.125
MA0058.10.116
MA0059.10.095
MA0060.15.88556e-20
MA0061.10.00821
MA0062.20.595
MA0065.20.0583
MA0066.10.154
MA0067.10.786
MA0068.10.583
MA0069.10.744
MA0070.10.609
MA0071.10.913
MA0072.10.303
MA0073.10.616
MA0074.10.193
MA0076.10.0335
MA0077.10.267
MA0078.10.954
MA0079.20.188
MA0080.27.71717e-12
MA0081.10.0539
MA0083.19.32455e-4
MA0084.10.31
MA0087.10.36
MA0088.10.319
MA0090.10.0124
MA0091.10.42
MA0092.10.266
MA0093.10.115
MA0099.29.1745e-18
MA0100.10.125
MA0101.10.0328
MA0102.20.0297
MA0103.10.737
MA0104.20.0141
MA0105.10.0543
MA0106.10.25
MA0107.10.00549
MA0108.23.33224e-5
MA0111.10.771
MA0112.20.00267
MA0113.10.0835
MA0114.10.157
MA0115.10.534
MA0116.10.131
MA0117.10.624
MA0119.10.47
MA0122.10.526
MA0124.10.566
MA0125.10.062
MA0131.10.153
MA0135.10.114
MA0136.12.36182e-9
MA0137.20.00184
MA0138.20.44
MA0139.10.408
MA0140.10.893
MA0141.10.243
MA0142.10.873
MA0143.10.795
MA0144.18.16775e-5
MA0145.10.0162
MA0146.10.289
MA0147.10.0184
MA0148.10.173
MA0149.10.834
MA0150.11.36416e-4
MA0152.10.999
MA0153.10.172
MA0154.10.0825
MA0155.10.374
MA0156.19.00392e-7
MA0157.10.456
MA0159.10.0563
MA0160.10.26
MA0162.10.243
MA0163.10.00951
MA0164.10.828
MA0258.10.14
MA0259.10.0528



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11267

Novel motifP-value
10.995
100.424
1000.331
1010.7
1020.419
1030.0382
1040.531
1050.841
1060.0011
1070.0105
1080.781
1090.48
110.482
1100.866
1110.818
1120.149
1130.916
1140.108
1150.654
1160.465
1170.678
1180.772
1190.467
120.862
1200.147
1210.952
1220.917
1230.204
1240.683
1250.264
1260.616
1270.534
1280.106
1290.433
130.792
1300.758
1310.414
1320.877
1330.642
1340.703
1350.0622
1360.971
1370.164
1380.102
1390.0279
140.892
1400.674
1410.992
1420.485
1430.39
1440.424
1450.406
1460.305
1470.357
1480.118
1490.133
150.268
1500.372
1510.302
1520.0158
1530.653
1540.921
1550.43
1560.98
1570.415
1580.0846
1590.00587
160.166
1600.548
1610.662
1620.841
1630.185
1640.453
1650.219
1660.697
1670.491
1680.0943
1690.0166
170.313
180.22
190.121
20.148
200.42
210.961
220.0989
238.4699e-4
240.496
250.399
260.899
270.112
280.914
290.566
30.243
300.194
310.397
320.0498
330.379
340.394
350.91
360.963
370.16
380.43
390.325
40.228
400.687
410.129
420.611
430.156
440.431
450.238
460.438
470.727
480.908
490.691
50.233
500.364
510.45
520.126
530.899
540.279
550.0492
560.353
570.741
580.244
590.0355
60.775
600.00755
610.953
620.121
630.124
640.925
650.097
660.0451
670.993
680.588
690.494
70.319
700.0186
710.359
720.0371
730.0124
740.271
750.431
760.701
770.0396
780.971
790.183
80.406
800.042
810.372
820.163
830.447
840.463
850.0333
860.56
870.319
880.694
890.0312
90.151
900.588
910.362
920.0263
930.91
940.304
950.367
960.281
970.495
980.304
990.433



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11267


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005388 (photoreceptor array)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0102919 (retinoblastoma cell line sample)
0102920 (Y-79 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0010316 (germ layer / neural crest)

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