FF:10496-107C1: Difference between revisions

Latest revision as of 14:27, 3 June 2020

Name:	bile duct carcinoma cell line:TFK-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11265
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bile duct
dev stage	NA
sex	male
age	63
cell type	duct cell, bile duct
cell line	TFK-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005693

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11265		CAGE		DRX007834		DRR008706

Accession ID Hg19

Library id		BAM		CTSS
CNhs11265		DRZ000131		DRZ001516

Accession ID Hg38

Library id		BAM		CTSS
CNhs11265		DRZ011481		DRZ012866

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0175
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0807
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0715
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0765
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.108
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.122
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0715
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.278
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.35
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.187
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00533
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0715
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.104
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.173
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11265

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.106
MA0003.1	MA0003.1	0.5
MA0004.1	MA0004.1	0.543
MA0006.1	MA0006.1	0.873
MA0007.1	MA0007.1	0.635
MA0009.1	MA0009.1	0.174
MA0014.1	MA0014.1	0.0779
MA0017.1	MA0017.1	0.00424
MA0018.2	MA0018.2	0.929
MA0019.1	MA0019.1	0.0534
MA0024.1	MA0024.1	0.389
MA0025.1	MA0025.1	0.00833
MA0027.1	MA0027.1	0.758
MA0028.1	MA0028.1	1.25514e-5
MA0029.1	MA0029.1	0.671
MA0030.1	MA0030.1	0.593
MA0031.1	MA0031.1	0.588
MA0035.2	MA0035.2	0.56
MA0038.1	MA0038.1	0.152
MA0039.2	MA0039.2	0.878
MA0040.1	MA0040.1	0.659
MA0041.1	MA0041.1	0.387
MA0042.1	MA0042.1	0.404
MA0043.1	MA0043.1	0.00322
MA0046.1	MA0046.1	9.36925e-15
MA0047.2	MA0047.2	7.95649e-4
MA0048.1	MA0048.1	0.297
MA0050.1	MA0050.1	0.128
MA0051.1	MA0051.1	0.191
MA0052.1	MA0052.1	0.0116
MA0055.1	MA0055.1	0.00511
MA0057.1	MA0057.1	0.543
MA0058.1	MA0058.1	0.466
MA0059.1	MA0059.1	0.0196
MA0060.1	MA0060.1	0.00188
MA0061.1	MA0061.1	0.678
MA0062.2	MA0062.2	7.04602e-5
MA0065.2	MA0065.2	8.35396e-4
MA0066.1	MA0066.1	0.707
MA0067.1	MA0067.1	0.572
MA0068.1	MA0068.1	0.681
MA0069.1	MA0069.1	0.57
MA0070.1	MA0070.1	0.0885
MA0071.1	MA0071.1	0.206
MA0072.1	MA0072.1	0.924
MA0073.1	MA0073.1	0.87
MA0074.1	MA0074.1	0.694
MA0076.1	MA0076.1	4.59287e-5
MA0077.1	MA0077.1	0.629
MA0078.1	MA0078.1	0.645
MA0079.2	MA0079.2	0.041
MA0080.2	MA0080.2	0.0154
MA0081.1	MA0081.1	0.0608
MA0083.1	MA0083.1	0.00748
MA0084.1	MA0084.1	0.564
MA0087.1	MA0087.1	0.856
MA0088.1	MA0088.1	0.388
MA0090.1	MA0090.1	0.0489
MA0091.1	MA0091.1	0.0224
MA0092.1	MA0092.1	0.627
MA0093.1	MA0093.1	0.46
MA0099.2	MA0099.2	0.00167
MA0100.1	MA0100.1	0.666
MA0101.1	MA0101.1	0.514
MA0102.2	MA0102.2	0.0218
MA0103.1	MA0103.1	9.39981e-9
MA0104.2	MA0104.2	0.0219
MA0105.1	MA0105.1	0.887
MA0106.1	MA0106.1	0.432
MA0107.1	MA0107.1	0.287
MA0108.2	MA0108.2	1.69855e-5
MA0111.1	MA0111.1	0.3
MA0112.2	MA0112.2	6.2226e-4
MA0113.1	MA0113.1	0.506
MA0114.1	MA0114.1	1.28402e-5
MA0115.1	MA0115.1	0.052
MA0116.1	MA0116.1	0.2
MA0117.1	MA0117.1	0.804
MA0119.1	MA0119.1	0.00162
MA0122.1	MA0122.1	0.686
MA0124.1	MA0124.1	0.0675
MA0125.1	MA0125.1	0.742
MA0131.1	MA0131.1	0.634
MA0135.1	MA0135.1	0.00298
MA0136.1	MA0136.1	0.987
MA0137.2	MA0137.2	0.789
MA0138.2	MA0138.2	0.922
MA0139.1	MA0139.1	5.61954e-5
MA0140.1	MA0140.1	0.674
MA0141.1	MA0141.1	0.0154
MA0142.1	MA0142.1	0.501
MA0143.1	MA0143.1	0.845
MA0144.1	MA0144.1	0.172
MA0145.1	MA0145.1	0.126
MA0146.1	MA0146.1	0.897
MA0147.1	MA0147.1	0.00885
MA0148.1	MA0148.1	3.44069e-4
MA0149.1	MA0149.1	0.117
MA0150.1	MA0150.1	1.85729e-5
MA0152.1	MA0152.1	0.259
MA0153.1	MA0153.1	5.31698e-14
MA0154.1	MA0154.1	0.827
MA0155.1	MA0155.1	0.186
MA0156.1	MA0156.1	0.275
MA0157.1	MA0157.1	0.927
MA0159.1	MA0159.1	0.00154
MA0160.1	MA0160.1	0.0634
MA0162.1	MA0162.1	0.233
MA0163.1	MA0163.1	0.336
MA0164.1	MA0164.1	0.277
MA0258.1	MA0258.1	0.0188
MA0259.1	MA0259.1	0.408

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11265

Novel motif	Logo	P-value
1	1	0.0566
10	10	0.0354
100	100	0.0938
101	101	0.759
102	102	0.466
103	103	0.623
104	104	0.992
105	105	0.516
106	106	0.305
107	107	0.34
108	108	0.299
109	109	0.154
11	11	0.787
110	110	0.336
111	111	0.224
112	112	0.483
113	113	0.385
114	114	0.0496
115	115	0.709
116	116	0.418
117	117	0.116
118	118	0.463
119	119	0.0942
12	12	0.641
120	120	0.803
121	121	0.0228
122	122	0.423
123	123	0.00433
124	124	0.834
125	125	0.668
126	126	0.995
127	127	0.136
128	128	0.649
129	129	0.72
13	13	0.0166
130	130	0.513
131	131	0.337
132	132	0.715
133	133	0.136
134	134	0.771
135	135	0.528
136	136	0.216
137	137	0.134
138	138	0.748
139	139	0.117
14	14	0.736
140	140	0.515
141	141	0.27
142	142	0.842
143	143	0.048
144	144	0.318
145	145	0.785
146	146	0.435
147	147	0.73
148	148	0.128
149	149	0.986
15	15	0.0845
150	150	0.521
151	151	0.179
152	152	0.604
153	153	0.894
154	154	0.753
155	155	0.675
156	156	0.31
157	157	0.429
158	158	0.419
159	159	0.431
16	16	0.379
160	160	0.922
161	161	0.869
162	162	0.705
163	163	0.868
164	164	0.0289
165	165	0.0473
166	166	0.308
167	167	0.412
168	168	0.754
169	169	0.0113
17	17	0.287
18	18	0.509
19	19	0.533
2	2	0.864
20	20	0.163
21	21	0.255
22	22	0.913
23	23	0.96
24	24	0.466
25	25	0.603
26	26	0.144
27	27	0.989
28	28	0.606
29	29	0.193
3	3	0.113
30	30	0.859
31	31	0.599
32	32	0.175
33	33	0.109
34	34	0.326
35	35	0.621
36	36	0.12
37	37	0.487
38	38	0.471
39	39	0.41
4	4	0.505
40	40	0.371
41	41	0.0772
42	42	0.156
43	43	0.603
44	44	0.89
45	45	0.697
46	46	0.304
47	47	0.614
48	48	0.536
49	49	0.496
5	5	0.546
50	50	0.482
51	51	0.887
52	52	0.55
53	53	0.428
54	54	0.652
55	55	0.865
56	56	0.666
57	57	0.232
58	58	0.453
59	59	0.813
6	6	0.895
60	60	0.324
61	61	0.102
62	62	0.537
63	63	0.0649
64	64	0.393
65	65	0.593
66	66	0.786
67	67	0.745
68	68	0.051
69	69	0.463
7	7	0.193
70	70	0.0881
71	71	0.0851
72	72	0.631
73	73	0.951
74	74	0.967
75	75	0.011
76	76	0.255
77	77	0.189
78	78	0.00119
79	79	0.133
8	8	0.759
80	80	0.31
81	81	0.532
82	82	0.408
83	83	0.581
84	84	0.202
85	85	0.962
86	86	0.375
87	87	0.793
88	88	0.801
89	89	0.34
9	9	0.488
90	90	0.168
91	91	0.189
92	92	0.624
93	93	0.535
94	94	0.74
95	95	0.926
96	96	0.97
97	97	0.616
98	98	0.428
99	99	0.809

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11265

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0103910 bile duct cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002394 (bile duct)
0000058 (duct)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0002294 (biliary system)
0001173 (biliary tree)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103910 (bile duct cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000025,UBERON:0000058,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000119,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001173,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002294,UBERON:0002394,UBERON:0002423,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0003914,UBERON:0003928,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004912,UBERON:0004921,UBERON:0005256,UBERON:0005423,UBERON:0005911,UBERON:0006235,UBERON:0007026,UBERON:0008835,UBERON:0009142
+|DRA_sample_Accession=CAGE@SAMD00005693
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
+|accession_numbers=CAGE;DRX007834;DRR008706;DRZ000131;DRZ001516;DRZ011481;DRZ012866
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003928,UBERON:0010317,UBERON:0002294,UBERON:0001173,UBERON:0002423
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0103910
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.66!455.43!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!2.04!171.32!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!1.74!53.35!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.71!49.95!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.70!48.87!GRHL2;;chr14:38064429..38064486,-!p1@FOXA1!1.49!29.72!FOXA1;;chr5:134369879..134369898,-!p2@PITX1!1.46!27.93!PITX1;;chr2:46524897..46524911,+!p2@EPAS1!1.41!67.67!EPAS1;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.98!PITX1;;chr13:73633131..73633149,+!p1@KLF5!1.38!236.49!KLF5;;chr10:8095593..8095625,+!p3@GATA3!1.37!26.50!GATA3;;chr6:28321909..28321965,-!p3@ZNF323!1.37!22.20!ZNF323;;chr7:28448965..28448994,+!p2@CREB5!1.36!76.08!CREB5;;chr8:76319876..76319926,+!p1@HNF4G!1.34!20.95!HNF4G;;chr13:41593425..41593480,-!p1@ELF1!1.30!118.51!ELF1;;chr3:141087339..141087387,+!p2@ZBTB38!1.24!163.45!ZBTB38;;chr3:141087393..141087426,+!p3@ZBTB38!1.23!62.84!ZBTB38;;chr6:28321971..28321995,-!p1@ZNF323!1.23!16.11!ZNF323;;chr18:55102598..55102623,+!p1@ONECUT2!1.23!15.93!ONECUT2;;chrY:21906594..21906622,-!p1@KDM5D!1.20!14.86!KDM5D;;chr6:126240380..126240430,+!p2@NCOA7!1.19!37.42!NCOA7;;chr11:61520075..61520136,+!p1@C11orf9!1.19!30.61!C11orf9;;chr17:46682321..46682362,-!p1@HOXB6!1.19!14.32!HOXB6;;chr19:48774586..48774670,+!p1@ZNF114!1.18!17.90!ZNF114;;chr1:151804244..151804310,-!p1@RORC!1.18!14.14!RORC;;chr1:164600184..164600191,+!p38@PBX1!1.18!14.14!PBX1;;chr7:97840743..97840786,+!p1@BHLHA15!1.18!14.14!BHLHA15;;chr1:42801540..42801562,-!p4@FOXJ3!1.18!13.96!FOXJ3;;chr12:52445218..52445237,+!p1@NR4A1!1.15!165.95!NR4A1;;chr17:46688334..46688385,-!p1@HOXB7!1.14!18.62!HOXB7;;chr6:85473156..85473210,-!p2@TBX18!1.12!15.04!TBX18;;chr6:10415276..10415341,-!p2@TFAP2A!1.12!14.86!TFAP2A;;chr7:1577111..1577132,+!p4@MAFK!1.12!13.78!MAFK;;chr8:102504690..102504704,+!p3@GRHL2!1.12!12.17!GRHL2;;chr12:80084737..80084763,-!p3@PAWR!1.11!44.76!PAWR;;chrX:30327504..30327509,-!p1@NR0B1!1.11!11.82!NR0B1;;chr6:126240442..126240459,+!p4@NCOA7!1.10!14.68!NCOA7;;chrY:2803415..2803468,+!p1@ZFY!1.10!11.64!ZFY;;chr10:97889464..97889494,+!p3@ZNF518A!1.09!21.12!ZNF518A;;chr1:164528687..164528711,+!p6@PBX1!1.09!13.25!PBX1;;chr14:105935396..105935413,+!p4@MTA1!1.09!11.28!MTA1;;chr15:96869511..96869525,+!p16@NR2F2!1.05!11.46!NR2F2;;chr18:55102628..55102646,+!p2@ONECUT2!1.05!10.20!ONECUT2;;chr1:91487553..91487612,-!p1@ZNF644!1.04!169.53!ZNF644;;chr1:935398..935465,-!p2@HES4!1.04!20.95!HES4;;chr6:34524093..34524135,-!p1@SPDEF!1.04!10.03!SPDEF;;chr3:141121847..141121868,+!p5@ZBTB38!1.02!14.50!ZBTB38;;chr14:37131058..37131139,+!p1@PAX9!1.02!9.49!PAX9;;chr9:4300050..4300118,-!p1@GLIS3!1.01!60.87!GLIS3;;chr3:12330560..12330579,+!p1@PPARG!1.01!10.74!PPARG;;chr8:10588010..10588030,-!p1@SOX7!1.01!9.31!SOX7;;chr17:36105042..36105060,-!p1@HNF1B!0.99!8.77!HNF1B;;chr3:25469724..25469773,+!p1@RARB!0.98!12.53!RARB;;chr11:34642656..34642667,+!p2@EHF!0.98!8.59!EHF;;chr1:209979467..209979494,-!p1@IRF6!0.97!9.31!IRF6;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.38!TFAP2C;;chr20:22566120..22566136,-!p4@FOXA2!0.94!7.70!FOXA2;;chr3:193853927..193853944,+!p1@HES1!0.93!252.78!HES1;;chr3:168864315..168864339,-!p2@MECOM!0.93!12.53!MECOM;;chr7:73038839..73038862,-!p1@MLXIPL!0.93!7.52!MLXIPL;;chr2:157189180..157189290,-!p1@NR4A2!0.92!40.10!NR4A2;;chr1:935467..935484,-!p1@HES4!0.91!32.94!HES4;;chr3:25470156..25470227,+!p2@RARB!0.89!6.80!RARB;;chr4:57547454..57547469,-!p1@HOPX!0.89!6.80!HOPX;;chr17:41623259..41623278,-!p7@ETV4!0.88!7.88!ETV4;;chr19:33865009..33865090,+!p3@CEBPG!0.87!8.77!CEBPG;;chr7:156803329..156803362,-!p1@MNX1!0.87!6.44!MNX1;;chr7:28448995..28449011,+!p4@CREB5!0.86!8.95!CREB5;;chr20:18038521..18038571,-!p1@OVOL2!0.86!6.27!OVOL2;;chr17:36105074..36105086,-!p2@HNF1B!0.86!6.27!HNF1B;;chr19:33864600..33864732,+!p1@CEBPG!0.85!180.27!CEBPG;;chr2:101436564..101436647,+!p1@NPAS2!0.85!133.37!NPAS2;;chr19:36706024..36706049,+!p1@ZNF146!0.85!116.01!ZNF146;;chr7:113726357..113726443,+!p1@FOXP2!0.85!10.92!FOXP2;;chr6:10419768..10419819,-!p6@TFAP2A!0.85!6.09!TFAP2A;;chr6:21597765..21597779,+!p2@SOX4!0.84!51.38!SOX4;;chr10:51572408..51572454,+!p3@NCOA4!0.84!37.24!NCOA4;;chrX:131623044..131623089,-!p1@MBNL3!0.84!26.32!MBNL3;;chr6:126240356..126240379,+!p7@NCOA7!0.84!7.34!NCOA7;;chr16:30537839..30537929,-!p1@ZNF768!0.83!38.67!ZNF768;;chr14:62162285..62162296,+!p3@HIF1A!0.83!32.04!HIF1A;;chr16:54320101..54320125,-!p4@IRX3!0.82!8.23!IRX3;;chr6:126240463..126240489,+!p6@NCOA7!0.82!6.44!NCOA7;;chr17:46703942..46703964,-!p4@HOXB9!0.82!5.55!HOXB9;;chr14:64970670..64970712,-!p3@ZBTB25!0.80!12.17!ZBTB25;;chr1:91487516..91487528,-!p4@ZNF644!0.80!11.99!ZNF644;;chr1:203764633..203764674,+!p2@ZC3H11A!0.80!8.95!ZC3H11A;;chr6:126102292..126102329,+!p3@NCOA7!0.79!18.26!NCOA7;;chr6:28048343..28048354,+!p1@ZNF165!0.79!5.19!ZNF165;;chr19:36705998..36706021,+!p2@ZNF146!0.77!77.87!ZNF146;;chr19:59084872..59084920,-!p2@MZF1!0.77!13.96!MZF1;;chr6:10415484..10415508,-!p3@TFAP2A!0.77!4.83!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.77!4.83!GRHL2;;chr3:169381420..169381535,-!p1@MECOM!0.76!5.73!MECOM;;chr5:43120995..43121052,+!p1@ZNF131!0.75!25.78!ZNF131;;chr2:122042770..122042785,-!p1@TFCP2L1!0.75!4.65!TFCP2L1;;chr3:25470062..25470084,+!p4@RARB!0.75!4.65!RARB;;chr14:38064590..38064606,-!p2@FOXA1!0.75!4.65!FOXA1;;chr1:246729544..246729572,-!p1@TFB2M!0.74!49.05!TFB2M;;chr1:164528410..164528428,+!p1@PBX1!0.74!37.06!PBX1;;chr3:71632864..71632885,-!p4@FOXP1!0.74!16.83!FOXP1;;chr17:79881332..79881348,-!p3@MAFG!0.74!6.80!MAFG;;chr3:69915385..69915438,+!p3@MITF!0.74!4.48!MITF;;chr14:105935576..105935594,+!p11@MTA1!0.74!4.48!MTA1;;chr16:1429627..1429662,-!p2@UNKL!0.73!13.96!UNKL;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.06!EPAS1;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.62!IRX3;;chr5:137804405..137804444,+!p3@EGR1!0.72!5.19!EGR1;;chr14:38064307..38064323,-!p3@FOXA1!0.72!4.30!FOXA1;;chr3:141087562..141087594,+!p12@ZBTB38!0.72!4.30!ZBTB38;;chr3:69915369..69915381,+!p4@MITF!0.72!4.30!MITF;;chr1:10856639..10856662,-!p2@CASZ1!0.72!4.30!CASZ1;;chr1:164600166..164600175,+!p47@PBX1!0.72!4.30!PBX1;;chr4:87857474..87857489,+!p7@AFF1!0.71!7.70!AFF1;;chr13:41593493..41593506,-!p8@ELF1!0.71!4.12!ELF1;;chr21:38071430..38071456,+!p1@SIM2!0.71!4.12!SIM2;;chr19:57791328..57791377,+!p2@ZNF460!0.70!54.78!ZNF460;;chr2:238600933..238600985,+!p3@LRRFIP1!0.70!24.70!LRRFIP1;;chr19:53360870..53360873,-!p1@ZNF468!0.70!16.47!ZNF468;;chr3:141121164..141121249,+!p1@ZBTB38!0.69!76.98!ZBTB38;;chr5:76383133..76383186,-!p2@ZBED3!0.69!8.59!ZBED3;;chr15:96875657..96875760,+!p14@NR2F2!0.69!6.80!NR2F2;;chr18:45457909..45457939,-!p8@SMAD2!0.69!5.01!SMAD2;;chr6:126102254..126102289,+!p5@NCOA7!0.68!11.82!NCOA7;;chr5:76383070..76383117,-!p3@ZBED3!0.68!8.41!ZBED3;;chr13:73636252..73636307,+!p2@KLF5!0.68!4.48!KLF5;;chr11:64073022..64073056,+!p1@ESRRA!0.67!50.30!ESRRA;;chr12:27485762..27485776,+!p3@ARNTL2!0.67!10.92!ARNTL2;;chr14:24630902..24630948,+!p2@IRF9!0.67!4.65!IRF9;;chr1:61548225..61548299,+!p1@NFIA!0.66!54.96!NFIA;;chr5:137804484..137804498,+!p2@EGR1!0.66!16.29!EGR1;;chr5:174151553..174151610,+!p1@MSX2!0.66!6.44!MSX2;;chr13:73636516..73636532,+!p3@KLF5!0.66!4.12!KLF5;;chr8:76319850..76319870,+!p4@HNF4G!0.66!3.58!HNF4G;;chr8:81787006..81787031,-!p2@ZNF704!0.66!3.58!ZNF704;;chr3:23986762..23986821,+!p1@NR1D2!0.65!62.48!NR1D2;;chr1:153939955..153940009,+!p2@CREB3L4!0.65!8.95!CREB3L4;;chr9:4300016..4300039,-!p2@GLIS3!0.65!6.44!GLIS3;;chr17:41622925..41622976,-!p3@ETV4!0.65!5.55!ETV4;;chr15:43663214..43663261,-!p@chr15:43663214..43663261,-!0.64!22.38!ZSCAN29;;chr9:4299979..4299996,-!p3@GLIS3!0.64!5.91!GLIS3;;chr17:41622765..41622821,-!p2@ETV4!0.64!5.55!ETV4;;chr12:6798731..6798751,-!p4@ZNF384!0.64!5.55!ZNF384;;chr13:100634130..100634143,+!p3@ZIC2!0.64!3.40!ZIC2;;chr14:105935426..105935440,+!p9@MTA1!0.64!3.40!MTA1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.64!3.40!ZBTB7C;;chr6:10419824..10419840,-!p9@TFAP2A!0.64!3.40!TFAP2A;;chr7:27190547..27190591,-!p1@HOXA6!0.64!3.40!HOXA6;;chr20:18038486..18038520,-!p2@OVOL2!0.64!3.40!OVOL2;;chr4:149363475..149363492,-!p2@NR3C2!0.64!3.40!NR3C2;;chr5:16465902..16465917,-!p1@ZNF622!0.63!92.20!ZNF622;;chr3:44754126..44754171,+!p1@ZNF502!0.63!9.13!ZNF502;;chr3:24536253..24536328,-!p1@THRB!0.63!6.80!THRB;;chr8:128750175..128750201,+!p8@MYC!0.63!6.27!MYC;;chr2:28618532..28618610,+!p4@FOSL2!0.63!6.09!FOSL2;;chr8:71316428..71316459,-!p2@NCOA2!0.63!5.91!NCOA2;;chr16:30407021..30407061,+!p3@ZNF48!0.63!3.76!ZNF48;;chr6:1312155..1312187,+!p2@FOXQ1!0.63!3.22!FOXQ1;;chr11:34645791..34645836,+!p3@EHF!0.63!3.22!EHF;;chr3:128207349..128207386,-!p3@GATA2!0.63!3.22!GATA2;;chr12:80084768..80084821,-!p2@PAWR!0.62!25.96!PAWR;;chr8:123793860..123793921,+!p2@ZHX2!0.62!10.03!ZHX2;;chr5:138647473..138647476,+!p6@MATR3!0.62!9.13!MATR3;;chr8:123793959..123793977,+!p4@ZHX2!0.62!6.80!ZHX2;;chr5:72744445..72744466,-!p2@FOXD1!0.62!5.73!FOXD1;;chr1:158985493..158985535,+!p4@IFI16!0.62!5.19!IFI16;;chr20:50159198..50159299,-!p1@NFATC2!0.62!5.01!NFATC2;;chr15:35280439..35280503,-!p1@ZNF770!0.61!127.82!ZNF770;;chr19:58694421..58694485,+!p1@ZNF274!0.61!18.98!ZNF274;;chr1:91487836..91487854,-!p3@ZNF644!0.61!7.88!ZNF644;;chr6:21597600..21597664,+!p3@SOX4!0.61!5.55!SOX4;;chr1:158985469..158985489,+!p7@IFI16!0.61!3.76!IFI16;;chr17:48045917..48045977,+!p1@DLX4!0.61!3.04!DLX4;;chr6:10413188..10413249,-!p7@TFAP2A!0.61!3.04!TFAP2A;;chr1:212782094..212782109,+!p1@ATF3!0.60!99.00!ATF3;;chr17:17740287..17740307,-!p1@SREBF1!0.60!95.06!SREBF1;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.37!HIF1A;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.60!9.85!ZNF525;;chr10:35484053..35484076,+!p1@CREM!0.60!8.59!CREM;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.38!MATR3;;chr19:36706055..36706074,+!p3@ZNF146!0.59!15.93!ZNF146;;chr17:41623692..41623715,-!p1@ETV4!0.59!14.68!ETV4;;chr3:12329397..12329433,+!p2@PPARG!0.59!7.52!PPARG;;chr3:114343826..114343869,-!p4@ZBTB20!0.59!6.44!ZBTB20;;chr9:4299959..4299974,-!p4@GLIS3!0.59!5.01!GLIS3;;chr22:29196492..29196503,-!p3@XBP1!0.59!4.83!XBP1;;chr1:935496..93550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+|ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0009497,UBERON:0010316
 |fonse_cell_line=FF:0101120,FF:0103910
 |fonse_cell_line_closure=FF:0101120,FF:0103910
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10496-107C1
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100297;;FF:0103910
+|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0103910
+|is_obsolete=
+|library_id=CNhs11265
+|library_id_phase_based=2:CNhs11265
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10496
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10496
 |name=bile duct carcinoma cell line:TFK-1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11265,LSID758,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=107
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=69.762
 |sample_age=63
+|sample_category=cell lines
 |sample_cell_catalog=RCB2537
 |sample_cell_line=TFK-1
@@ Line 69: / Line 91: @@
 |sample_ethnicity=unknown
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.15445813747761e-248!GO:0043231;intracellular membrane-bound organelle;9.58495921813565e-198!GO:0043227;membrane-bound organelle;1.04423930241632e-197!GO:0043226;organelle;6.77461075311293e-197!GO:0043229;intracellular organelle;2.30298329873407e-196!GO:0005737;cytoplasm;7.06244900746521e-181!GO:0044422;organelle part;2.81248318446485e-139!GO:0044446;intracellular organelle part;1.3183343145798e-137!GO:0044444;cytoplasmic part;2.55427032256514e-126!GO:0044237;cellular metabolic process;2.99408418431433e-100!GO:0032991;macromolecular complex;3.00718740680717e-98!GO:0030529;ribonucleoprotein complex;1.09548022318406e-97!GO:0044238;primary metabolic process;1.62113097096011e-94!GO:0003723;RNA binding;1.12586806225463e-88!GO:0043170;macromolecule metabolic process;1.27511236589813e-86!GO:0005634;nucleus;5.34296347962206e-84!GO:0043233;organelle lumen;1.18901433055776e-78!GO:0031974;membrane-enclosed lumen;1.18901433055776e-78!GO:0044428;nuclear part;2.25048389318226e-78!GO:0005739;mitochondrion;8.63381997824965e-76!GO:0006396;RNA processing;6.45898713284277e-63!GO:0005515;protein binding;7.35561207383927e-63!GO:0006412;translation;8.80961422134004e-60!GO:0005840;ribosome;1.26022039244327e-59!GO:0031090;organelle membrane;1.33562772809793e-51!GO:0043283;biopolymer metabolic process;2.31895369204955e-51!GO:0010467;gene expression;8.95889075935051e-51!GO:0003735;structural constituent of ribosome;1.10248475279581e-50!GO:0009058;biosynthetic process;5.33584986675815e-50!GO:0031981;nuclear lumen;2.3334065855889e-49!GO:0019538;protein metabolic process;5.83136054894678e-49!GO:0044249;cellular biosynthetic process;1.27779151171887e-48!GO:0009059;macromolecule biosynthetic process;4.92432880075941e-47!GO:0044429;mitochondrial part;9.33627393998365e-47!GO:0016071;mRNA metabolic process;7.44105609103977e-46!GO:0043234;protein complex;1.291513737414e-45!GO:0033036;macromolecule localization;1.291513737414e-45!GO:0044267;cellular protein metabolic process;2.34880275036535e-45!GO:0015031;protein transport;2.93187057570425e-45!GO:0044260;cellular macromolecule metabolic process;2.32882852015081e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.87529874356597e-44!GO:0008104;protein localization;7.29816382579608e-42!GO:0016043;cellular component organization and biogenesis;9.84224551264559e-42!GO:0033279;ribosomal subunit;1.08129411655548e-41!GO:0045184;establishment of protein localization;2.01274174005953e-41!GO:0008380;RNA splicing;4.82600953127181e-41!GO:0006397;mRNA processing;4.84554805642925e-41!GO:0031967;organelle envelope;2.86487743566973e-40!GO:0031975;envelope;4.90362832302619e-40!GO:0005829;cytosol;1.8887202368173e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.18088585069476e-36!GO:0003676;nucleic acid binding;5.8920276762095e-31!GO:0043228;non-membrane-bound organelle;1.04326320355921e-30!GO:0043232;intracellular non-membrane-bound organelle;1.04326320355921e-30!GO:0065003;macromolecular complex assembly;2.0817508956994e-30!GO:0046907;intracellular transport;5.47464672971231e-30!GO:0006886;intracellular protein transport;1.66827506410486e-29!GO:0005681;spliceosome;2.87427456020255e-29!GO:0005654;nucleoplasm;8.62170294180312e-29!GO:0005740;mitochondrial envelope;2.91581689535327e-28!GO:0019866;organelle inner membrane;9.09724435864619e-28!GO:0006996;organelle organization and biogenesis;1.52178628985656e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.77525008522933e-27!GO:0031966;mitochondrial membrane;4.32263222221043e-27!GO:0000166;nucleotide binding;1.54567014516971e-26!GO:0005743;mitochondrial inner membrane;2.57229260208429e-26!GO:0022607;cellular component assembly;7.26228428203154e-26!GO:0006259;DNA metabolic process;1.26112291018835e-25!GO:0044451;nucleoplasm part;5.97241856340748e-24!GO:0016070;RNA metabolic process;1.92726338967694e-23!GO:0006119;oxidative phosphorylation;3.97123963095179e-23!GO:0005730;nucleolus;9.90199221109972e-23!GO:0031980;mitochondrial lumen;1.82995907436234e-22!GO:0005759;mitochondrial matrix;1.82995907436234e-22!GO:0015935;small ribosomal subunit;2.64016781907237e-22!GO:0012505;endomembrane system;2.64016781907237e-22!GO:0016874;ligase activity;4.89006572207326e-22!GO:0044455;mitochondrial membrane part;5.45067230809185e-22!GO:0016462;pyrophosphatase activity;5.45067230809185e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.57172106182692e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;7.56645009379411e-22!GO:0044445;cytosolic part;8.30363019053834e-22!GO:0017111;nucleoside-triphosphatase activity;1.47309946718994e-20!GO:0015934;large ribosomal subunit;1.85458628899243e-20!GO:0006457;protein folding;2.94708371591795e-20!GO:0022618;protein-RNA complex assembly;1.76322610944585e-19!GO:0044265;cellular macromolecule catabolic process;1.9775481525237e-19!GO:0051649;establishment of cellular localization;2.40230155962136e-19!GO:0051641;cellular localization;1.00879346812328e-18!GO:0006512;ubiquitin cycle;1.73574936752919e-18!GO:0005761;mitochondrial ribosome;5.6109934435132e-18!GO:0000313;organellar ribosome;5.6109934435132e-18!GO:0019941;modification-dependent protein catabolic process;5.86004498815168e-18!GO:0043632;modification-dependent macromolecule catabolic process;5.86004498815168e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;5.90221623970469e-18!GO:0005746;mitochondrial respiratory chain;1.01683329594476e-17!GO:0044257;cellular protein catabolic process;1.06401355821803e-17!GO:0051186;cofactor metabolic process;1.40405909727049e-17!GO:0008135;translation factor activity, nucleic acid binding;1.4515706884729e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.47043142818276e-17!GO:0032553;ribonucleotide binding;2.45228723720115e-17!GO:0032555;purine ribonucleotide binding;2.45228723720115e-17!GO:0017076;purine nucleotide binding;2.70799010682942e-17!GO:0042254;ribosome biogenesis and assembly;3.03837952302341e-17!GO:0008134;transcription factor binding;1.50579699052657e-16!GO:0007049;cell cycle;1.65417244862056e-16!GO:0044248;cellular catabolic process;2.53609924367628e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.18230738131994e-16!GO:0006974;response to DNA damage stimulus;6.01789207703558e-16!GO:0000502;proteasome complex (sensu Eukaryota);6.7619450497901e-16!GO:0043285;biopolymer catabolic process;8.94385863934351e-16!GO:0044432;endoplasmic reticulum part;1.46529783013234e-15!GO:0005783;endoplasmic reticulum;1.74947457402153e-15!GO:0005524;ATP binding;2.45655844818339e-15!GO:0006732;coenzyme metabolic process;2.46517852396215e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.50349466912112e-15!GO:0032559;adenyl ribonucleotide binding;3.50320026271293e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.72735078301823e-15!GO:0003954;NADH dehydrogenase activity;3.72735078301823e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.72735078301823e-15!GO:0030554;adenyl nucleotide binding;6.12442502080147e-15!GO:0006605;protein targeting;8.46260615971097e-15!GO:0048770;pigment granule;1.17334070127938e-14!GO:0042470;melanosome;1.17334070127938e-14!GO:0005794;Golgi apparatus;1.23207194071933e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.23207194071933e-14!GO:0000375;RNA splicing, via transesterification reactions;1.23207194071933e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.23207194071933e-14!GO:0009057;macromolecule catabolic process;1.29653137216999e-14!GO:0043412;biopolymer modification;1.4491116402906e-14!GO:0016887;ATPase activity;1.46720879161378e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.7868985918236e-14!GO:0042773;ATP synthesis coupled electron transport;4.7868985918236e-14!GO:0042623;ATPase activity, coupled;6.40243860849801e-14!GO:0051082;unfolded protein binding;1.47365265243658e-13!GO:0016604;nuclear body;1.51488191722996e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.57326290201504e-13!GO:0045271;respiratory chain complex I;1.57326290201504e-13!GO:0005747;mitochondrial respiratory chain complex I;1.57326290201504e-13!GO:0003743;translation initiation factor activity;1.63126569256295e-13!GO:0006399;tRNA metabolic process;1.7771111732817e-13!GO:0006366;transcription from RNA polymerase II promoter;1.87712080789746e-13!GO:0030163;protein catabolic process;3.4082505897531e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.9870310415464e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.61711535043385e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.62246338778103e-13!GO:0004386;helicase activity;6.0159604841739e-13!GO:0005789;endoplasmic reticulum membrane;9.71974325634346e-13!GO:0006281;DNA repair;1.12557518536243e-12!GO:0048193;Golgi vesicle transport;1.43999894080193e-12!GO:0006464;protein modification process;2.35590020153525e-12!GO:0012501;programmed cell death;2.42402172979191e-12!GO:0005635;nuclear envelope;3.30142460599497e-12!GO:0009055;electron carrier activity;3.8644067495061e-12!GO:0006413;translational initiation;3.91537847535244e-12!GO:0006915;apoptosis;4.06689648351473e-12!GO:0009719;response to endogenous stimulus;4.79492992324772e-12!GO:0031965;nuclear membrane;7.56407512672427e-12!GO:0051276;chromosome organization and biogenesis;8.41067415987629e-12!GO:0044453;nuclear membrane part;8.76094330758682e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.88037945555589e-12!GO:0016072;rRNA metabolic process;1.39436622436823e-11!GO:0005694;chromosome;1.48583965071612e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.63108389905749e-11!GO:0008026;ATP-dependent helicase activity;2.47132681888683e-11!GO:0022402;cell cycle process;2.6501299415233e-11!GO:0016607;nuclear speck;4.46398693423062e-11!GO:0006364;rRNA processing;6.33485894497795e-11!GO:0051188;cofactor biosynthetic process;6.41309228502466e-11!GO:0008219;cell death;7.9565102461204e-11!GO:0016265;death;7.9565102461204e-11!GO:0005643;nuclear pore;9.58756091269361e-11!GO:0006260;DNA replication;1.42914947057707e-10!GO:0065002;intracellular protein transport across a membrane;1.44569494760135e-10!GO:0050657;nucleic acid transport;1.55304829337752e-10!GO:0051236;establishment of RNA localization;1.55304829337752e-10!GO:0050658;RNA transport;1.55304829337752e-10!GO:0006403;RNA localization;1.9252626048445e-10!GO:0006913;nucleocytoplasmic transport;2.63122940185333e-10!GO:0006446;regulation of translational initiation;2.76643254095821e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.82165059944538e-10!GO:0003712;transcription cofactor activity;4.58117218386119e-10!GO:0051169;nuclear transport;5.1687794082557e-10!GO:0016192;vesicle-mediated transport;5.67823372007805e-10!GO:0043687;post-translational protein modification;6.55202320577374e-10!GO:0044427;chromosomal part;8.55425550438437e-10!GO:0008639;small protein conjugating enzyme activity;1.00323860865199e-09!GO:0009108;coenzyme biosynthetic process;1.00818370001795e-09!GO:0006323;DNA packaging;1.26288043842413e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.55188896248371e-09!GO:0019787;small conjugating protein ligase activity;1.57337704818745e-09!GO:0004842;ubiquitin-protein ligase activity;1.80327404892864e-09!GO:0008565;protein transporter activity;1.90505514543523e-09!GO:0045333;cellular respiration;4.15160581508313e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.9274860170316e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.9274860170316e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.9274860170316e-09!GO:0006461;protein complex assembly;5.28823058285016e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.80044794723345e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.00057446938449e-09!GO:0043038;amino acid activation;8.17024569133418e-09!GO:0006418;tRNA aminoacylation for protein translation;8.17024569133418e-09!GO:0043039;tRNA aminoacylation;8.17024569133418e-09!GO:0007005;mitochondrion organization and biogenesis;9.1456212270882e-09!GO:0009060;aerobic respiration;1.02676051644536e-08!GO:0046930;pore complex;1.16113070355502e-08!GO:0051028;mRNA transport;1.18831707339134e-08!GO:0016881;acid-amino acid ligase activity;1.20613707764101e-08!GO:0009056;catabolic process;1.22678676709952e-08!GO:0015986;ATP synthesis coupled proton transport;2.21344884006606e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.21344884006606e-08!GO:0000278;mitotic cell cycle;2.33277986837836e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.99344257976855e-08!GO:0051246;regulation of protein metabolic process;3.85663307578915e-08!GO:0019829;cation-transporting ATPase activity;3.92240289859199e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.26101180707753e-08!GO:0005793;ER-Golgi intermediate compartment;5.92384195345623e-08!GO:0016740;transferase activity;6.60463484134e-08!GO:0042981;regulation of apoptosis;1.05947393940516e-07!GO:0043566;structure-specific DNA binding;1.06996371429144e-07!GO:0043067;regulation of programmed cell death;1.10487363954353e-07!GO:0051726;regulation of cell cycle;1.23576981820719e-07!GO:0000074;regulation of progression through cell cycle;1.46069507443904e-07!GO:0006163;purine nucleotide metabolic process;1.80869872132833e-07!GO:0016568;chromatin modification;2.12432165419645e-07!GO:0032446;protein modification by small protein conjugation;2.30568767623286e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.61181888410218e-07!GO:0017038;protein import;2.65198661797068e-07!GO:0016567;protein ubiquitination;2.74724634316515e-07!GO:0009259;ribonucleotide metabolic process;2.85828910056824e-07!GO:0065004;protein-DNA complex assembly;2.99079840381468e-07!GO:0006754;ATP biosynthetic process;3.00888798030282e-07!GO:0006753;nucleoside phosphate metabolic process;3.00888798030282e-07!GO:0006164;purine nucleotide biosynthetic process;3.08667771378681e-07!GO:0050794;regulation of cellular process;3.15257575284911e-07!GO:0045259;proton-transporting ATP synthase complex;3.56736687283869e-07!GO:0016491;oxidoreductase activity;3.5873199831433e-07!GO:0016779;nucleotidyltransferase activity;4.35585404260262e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.40392302963329e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.7983767280379e-07!GO:0016787;hydrolase activity;5.32115057091667e-07!GO:0044431;Golgi apparatus part;6.77420843651525e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.42513890706358e-07!GO:0005768;endosome;8.94982546097503e-07!GO:0046034;ATP metabolic process;9.20433746253359e-07!GO:0043069;negative regulation of programmed cell death;9.20582534671303e-07!GO:0000785;chromatin;1.02261789992334e-06!GO:0009150;purine ribonucleotide metabolic process;1.02398263054738e-06!GO:0006333;chromatin assembly or disassembly;1.04711300314755e-06!GO:0006091;generation of precursor metabolites and energy;1.09308569032145e-06!GO:0000245;spliceosome assembly;1.13343597072099e-06!GO:0006099;tricarboxylic acid cycle;1.21016806752125e-06!GO:0046356;acetyl-CoA catabolic process;1.21016806752125e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.2646094030794e-06!GO:0043623;cellular protein complex assembly;1.33046843397896e-06!GO:0009260;ribonucleotide biosynthetic process;1.34501051596398e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.44144840354981e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.53849139973334e-06!GO:0005762;mitochondrial large ribosomal subunit;1.73592068609151e-06!GO:0000315;organellar large ribosomal subunit;1.73592068609151e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.73981503868454e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.73981503868454e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.74717335584553e-06!GO:0009141;nucleoside triphosphate metabolic process;1.98822403750538e-06!GO:0043066;negative regulation of apoptosis;1.98822403750538e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.42759830933352e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.42759830933352e-06!GO:0003724;RNA helicase activity;2.43166159639463e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.63414425463271e-06!GO:0022403;cell cycle phase;2.79626644362535e-06!GO:0006752;group transfer coenzyme metabolic process;2.8213359460212e-06!GO:0006084;acetyl-CoA metabolic process;2.91842610612436e-06!GO:0006613;cotranslational protein targeting to membrane;3.04759239600141e-06!GO:0005667;transcription factor complex;3.61883326589811e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.64620172410912e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.64620172410912e-06!GO:0048475;coated membrane;3.89587471308817e-06!GO:0030117;membrane coat;3.89587471308817e-06!GO:0004298;threonine endopeptidase activity;4.27006150763107e-06!GO:0016563;transcription activator activity;4.77816537523332e-06!GO:0003697;single-stranded DNA binding;5.01559825457608e-06!GO:0051427;hormone receptor binding;5.23475208111913e-06!GO:0003713;transcription coactivator activity;5.49414496401993e-06!GO:0008033;tRNA processing;6.14120434078477e-06!GO:0030120;vesicle coat;6.50794834150501e-06!GO:0030662;coated vesicle membrane;6.50794834150501e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.97314730109633e-06!GO:0009117;nucleotide metabolic process;7.58770463858363e-06!GO:0051301;cell division;7.67884905432393e-06!GO:0048523;negative regulation of cellular process;8.16508102901459e-06!GO:0000314;organellar small ribosomal subunit;8.39457355694284e-06!GO:0005763;mitochondrial small ribosomal subunit;8.39457355694284e-06!GO:0031324;negative regulation of cellular metabolic process;8.63857484686461e-06!GO:0051168;nuclear export;9.78819520395018e-06!GO:0000151;ubiquitin ligase complex;1.02379824295399e-05!GO:0035257;nuclear hormone receptor binding;1.06267678397453e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.12918947604507e-05!GO:0051187;cofactor catabolic process;1.15183516518725e-05!GO:0019752;carboxylic acid metabolic process;1.23392514980128e-05!GO:0006082;organic acid metabolic process;1.25196443796941e-05!GO:0006916;anti-apoptosis;1.2575150648938e-05!GO:0000139;Golgi membrane;1.29086314153905e-05!GO:0019222;regulation of metabolic process;1.46255951117202e-05!GO:0009892;negative regulation of metabolic process;1.4785590828367e-05!GO:0009109;coenzyme catabolic process;1.621928336401e-05!GO:0003899;DNA-directed RNA polymerase activity;2.08779450248395e-05!GO:0000087;M phase of mitotic cell cycle;2.13386740655504e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.51991079902243e-05!GO:0043021;ribonucleoprotein binding;2.71924930697178e-05!GO:0007067;mitosis;3.02399918179707e-05!GO:0006414;translational elongation;3.74126192707213e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.8753464078912e-05!GO:0003690;double-stranded DNA binding;3.96295063980052e-05!GO:0006793;phosphorus metabolic process;4.58529772982428e-05!GO:0006796;phosphate metabolic process;4.58529772982428e-05!GO:0019843;rRNA binding;5.06158183450831e-05!GO:0044440;endosomal part;5.61195134897098e-05!GO:0010008;endosome membrane;5.61195134897098e-05!GO:0005770;late endosome;6.32589907309714e-05!GO:0006261;DNA-dependent DNA replication;6.58295278431e-05!GO:0051170;nuclear import;7.09700376641843e-05!GO:0006612;protein targeting to membrane;7.20089779675853e-05!GO:0016853;isomerase activity;7.78824452197232e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.34878845634566e-05!GO:0016564;transcription repressor activity;0.000101433887820617!GO:0008654;phospholipid biosynthetic process;0.000107525979887219!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00011002738859919!GO:0006626;protein targeting to mitochondrion;0.000113137171330158!GO:0000279;M phase;0.00014404597972683!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000155021992321301!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00016119557616646!GO:0015399;primary active transmembrane transporter activity;0.00016119557616646!GO:0008186;RNA-dependent ATPase activity;0.00016751221883128!GO:0006606;protein import into nucleus;0.000184060413135878!GO:0033116;ER-Golgi intermediate compartment membrane;0.000184060413135878!GO:0005813;centrosome;0.000197592153307441!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00019786811690774!GO:0006402;mRNA catabolic process;0.00021252789239709!GO:0045454;cell redox homeostasis;0.000225693720644609!GO:0048519;negative regulation of biological process;0.000228482411709447!GO:0044452;nucleolar part;0.000244683382600589!GO:0030880;RNA polymerase complex;0.00024976388749701!GO:0003924;GTPase activity;0.000251103444828208!GO:0005525;GTP binding;0.000257634980943541!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000257634980943541!GO:0005798;Golgi-associated vesicle;0.000257634980943541!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000257634980943541!GO:0043681;protein import into mitochondrion;0.000285354188794146!GO:0006401;RNA catabolic process;0.000291862907785301!GO:0048522;positive regulation of cellular process;0.000294433918532899!GO:0048471;perinuclear region of cytoplasm;0.000333864517699586!GO:0008250;oligosaccharyl transferase complex;0.000336215687305664!GO:0004576;oligosaccharyl transferase activity;0.000360649568989646!GO:0016741;transferase activity, transferring one-carbon groups;0.000370575944413446!GO:0007243;protein kinase cascade;0.000375291239790106!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000377026449717215!GO:0003714;transcription corepressor activity;0.000385445669796519!GO:0016310;phosphorylation;0.000397019536835738!GO:0008168;methyltransferase activity;0.000441046041313203!GO:0005815;microtubule organizing center;0.000448783353322237!GO:0003702;RNA polymerase II transcription factor activity;0.000450093936838145!GO:0048500;signal recognition particle;0.00048076238070776!GO:0006334;nucleosome assembly;0.000482768271946461!GO:0050662;coenzyme binding;0.000487806924814683!GO:0004004;ATP-dependent RNA helicase activity;0.00050904249128867!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000528360249967683!GO:0000428;DNA-directed RNA polymerase complex;0.000528360249967683!GO:0031072;heat shock protein binding;0.000530883321522915!GO:0006352;transcription initiation;0.000582848715864447!GO:0051789;response to protein stimulus;0.0005971382997573!GO:0006986;response to unfolded protein;0.0005971382997573!GO:0016251;general RNA polymerase II transcription factor activity;0.000632718734419167!GO:0048037;cofactor binding;0.00066106073971568!GO:0000049;tRNA binding;0.000675954130193477!GO:0016859;cis-trans isomerase activity;0.000695171208827538!GO:0045893;positive regulation of transcription, DNA-dependent;0.000711907871866467!GO:0016363;nuclear matrix;0.00072122042472375!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000726675065384242!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000726675065384242!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000726675065384242!GO:0050789;regulation of biological process;0.000733224144511156!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000733224144511156!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000788823303283252!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000788823303283252!GO:0022890;inorganic cation transmembrane transporter activity;0.000804559792996348!GO:0006611;protein export from nucleus;0.000813429222860603!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000819782614494611!GO:0006302;double-strand break repair;0.000835507343253815!GO:0006520;amino acid metabolic process;0.000863565583185004!GO:0045786;negative regulation of progression through cell cycle;0.000878498337397328!GO:0051329;interphase of mitotic cell cycle;0.000880161926029833!GO:0006118;electron transport;0.000883279460625893!GO:0031323;regulation of cellular metabolic process;0.000926647293475193!GO:0065009;regulation of a molecular function;0.000952761391293274!GO:0005885;Arp2/3 protein complex;0.000954949832903412!GO:0031497;chromatin assembly;0.0009677460355931!GO:0006891;intra-Golgi vesicle-mediated transport;0.000976271391969803!GO:0003729;mRNA binding;0.00100851049941046!GO:0046489;phosphoinositide biosynthetic process;0.00103021692747279!GO:0005788;endoplasmic reticulum lumen;0.00103772686276788!GO:0006417;regulation of translation;0.00105406424574683!GO:0007264;small GTPase mediated signal transduction;0.00109173386143332!GO:0042802;identical protein binding;0.00109173386143332!GO:0051540;metal cluster binding;0.00112046395278706!GO:0051536;iron-sulfur cluster binding;0.00112046395278706!GO:0031968;organelle outer membrane;0.00113328040082347!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00114083565635059!GO:0005769;early endosome;0.00115547150069912!GO:0005684;U2-dependent spliceosome;0.00120268926221682!GO:0008312;7S RNA binding;0.00122847012793915!GO:0019867;outer membrane;0.00126368247638945!GO:0051252;regulation of RNA metabolic process;0.00126368247638945!GO:0051287;NAD binding;0.00126368247638945!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00130529454487474!GO:0006839;mitochondrial transport;0.00133978052732978!GO:0051325;interphase;0.00133978052732978!GO:0006818;hydrogen transport;0.00135661670308166!GO:0032561;guanyl ribonucleotide binding;0.00137089753614553!GO:0019001;guanyl nucleotide binding;0.00137089753614553!GO:0006383;transcription from RNA polymerase III promoter;0.00137774242303144!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00141430658637014!GO:0045047;protein targeting to ER;0.00141430658637014!GO:0006950;response to stress;0.00141669654478644!GO:0016481;negative regulation of transcription;0.00147963427185816!GO:0005657;replication fork;0.00149135504368438!GO:0045941;positive regulation of transcription;0.00152517721556123!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00153686564414299!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00153686564414299!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00156210079440464!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00156406577037442!GO:0031988;membrane-bound vesicle;0.00157700054949792!GO:0015992;proton transport;0.0016006810605779!GO:0035258;steroid hormone receptor binding;0.00160362967776335!GO:0018196;peptidyl-asparagine modification;0.00162318906767833!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00162318906767833!GO:0015630;microtubule cytoskeleton;0.00167172793956315!GO:0031326;regulation of cellular biosynthetic process;0.00170765434015412!GO:0051052;regulation of DNA metabolic process;0.00174256132674314!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00177879279496095!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.001840157882332!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00184670596003058!GO:0015002;heme-copper terminal oxidase activity;0.00184670596003058!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00184670596003058!GO:0004129;cytochrome-c oxidase activity;0.00184670596003058!GO:0043492;ATPase activity, coupled to movement of substances;0.00187548439833535!GO:0000096;sulfur amino acid metabolic process;0.0019539609440355!GO:0009889;regulation of biosynthetic process;0.00199063118004974!GO:0005741;mitochondrial outer membrane;0.00207945375226661!GO:0016023;cytoplasmic membrane-bound vesicle;0.00222282310637333!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00222282310637333!GO:0005819;spindle;0.00222282310637333!GO:0009165;nucleotide biosynthetic process;0.00238067261081895!GO:0009451;RNA modification;0.00238865038863654!GO:0031252;leading edge;0.00247937268586918!GO:0051087;chaperone binding;0.00248371906580648!GO:0004518;nuclease activity;0.0026625600659974!GO:0003746;translation elongation factor activity;0.00273431839584478!GO:0046467;membrane lipid biosynthetic process;0.00275665275255715!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00277531163381045!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0027924488058001!GO:0005048;signal sequence binding;0.00281546585793673!GO:0019899;enzyme binding;0.00287751026969559!GO:0046483;heterocycle metabolic process;0.00291461819910614!GO:0006405;RNA export from nucleus;0.00312831129255147!GO:0004527;exonuclease activity;0.00325434661710611!GO:0043488;regulation of mRNA stability;0.00334449850235895!GO:0043487;regulation of RNA stability;0.00334449850235895!GO:0030867;rough endoplasmic reticulum membrane;0.00334449850235895!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00353359373717342!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00356546226272831!GO:0007051;spindle organization and biogenesis;0.00356675280250576!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00414444258147316!GO:0000059;protein import into nucleus, docking;0.00417609634178304!GO:0006749;glutathione metabolic process;0.00430893537700412!GO:0006506;GPI anchor biosynthetic process;0.00445112438707065!GO:0008094;DNA-dependent ATPase activity;0.0045821959963075!GO:0046983;protein dimerization activity;0.00463133459649544!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00471430342796024!GO:0008610;lipid biosynthetic process;0.00512781404808217!GO:0030384;phosphoinositide metabolic process;0.00515907810067929!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00521053008420664!GO:0007006;mitochondrial membrane organization and biogenesis;0.00529776125898686!GO:0006350;transcription;0.00533704492602247!GO:0030658;transport vesicle membrane;0.0058903748460121!GO:0031982;vesicle;0.005922977081677!GO:0003678;DNA helicase activity;0.00649118504239457!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00649118504239457!GO:0032508;DNA duplex unwinding;0.00657024399531695!GO:0032392;DNA geometric change;0.00657024399531695!GO:0030134;ER to Golgi transport vesicle;0.00671476478636034!GO:0008234;cysteine-type peptidase activity;0.00697247143101122!GO:0003682;chromatin binding;0.00719692989877305!GO:0006505;GPI anchor metabolic process;0.00719692989877305!GO:0030176;integral to endoplasmic reticulum membrane;0.00724465873814144!GO:0046474;glycerophospholipid biosynthetic process;0.00729298621699312!GO:0030127;COPII vesicle coat;0.00754926005927114!GO:0012507;ER to Golgi transport vesicle membrane;0.00754926005927114!GO:0006497;protein amino acid lipidation;0.00772359424090199!GO:0006519;amino acid and derivative metabolic process;0.00799690642311964!GO:0043022;ribosome binding;0.00804524720045013!GO:0031410;cytoplasmic vesicle;0.00849517096181636!GO:0045045;secretory pathway;0.00875229046788891!GO:0003711;transcription elongation regulator activity;0.00901245674426756!GO:0006595;polyamine metabolic process;0.00918339060154271!GO:0016197;endosome transport;0.00924372749555811!GO:0016272;prefoldin complex;0.00925729088495907!GO:0006400;tRNA modification;0.00952761648888596!GO:0000776;kinetochore;0.00972274098716545!GO:0000339;RNA cap binding;0.00989062192623132!GO:0047006;20-alpha-hydroxysteroid dehydrogenase activity;0.0100521123007636!GO:0051128;regulation of cellular component organization and biogenesis;0.0100833080052437!GO:0009112;nucleobase metabolic process;0.0101765812583919!GO:0048487;beta-tubulin binding;0.0103069939276119!GO:0008022;protein C-terminus binding;0.0104058572017193!GO:0048518;positive regulation of biological process;0.0104102350365353!GO:0030521;androgen receptor signaling pathway;0.0109505110726187!GO:0046519;sphingoid metabolic process;0.0109919665556481!GO:0005758;mitochondrial intermembrane space;0.0110344738388474!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0111613000816317!GO:0051338;regulation of transferase activity;0.0115118143523803!GO:0003684;damaged DNA binding;0.0115352137469209!GO:0030118;clathrin coat;0.0116033108231233!GO:0032984;macromolecular complex disassembly;0.0116297178671451!GO:0010468;regulation of gene expression;0.0117022152903464!GO:0043624;cellular protein complex disassembly;0.0118636977374319!GO:0008408;3'-5' exonuclease activity;0.0119131648837206!GO:0046966;thyroid hormone receptor binding;0.0119702260363161!GO:0030663;COPI coated vesicle membrane;0.0120641349111976!GO:0030126;COPI vesicle coat;0.0120641349111976!GO:0004532;exoribonuclease activity;0.0121891098007626!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0121891098007626!GO:0051101;regulation of DNA binding;0.0123189508582679!GO:0008139;nuclear localization sequence binding;0.0124624687637781!GO:0005791;rough endoplasmic reticulum;0.0125158463380677!GO:0043284;biopolymer biosynthetic process;0.0128067524211008!GO:0005832;chaperonin-containing T-complex;0.0128339394129132!GO:0016407;acetyltransferase activity;0.0128440048198166!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0136071735343652!GO:0051098;regulation of binding;0.0136185367613685!GO:0006672;ceramide metabolic process;0.0137855088789494!GO:0031902;late endosome membrane;0.0137935328195564!GO:0030660;Golgi-associated vesicle membrane;0.0146325211489974!GO:0007030;Golgi organization and biogenesis;0.0148445692591693!GO:0031647;regulation of protein stability;0.0155082305101808!GO:0008287;protein serine/threonine phosphatase complex;0.015684686478298!GO:0004540;ribonuclease activity;0.0163222178938469!GO:0009116;nucleoside metabolic process;0.0163235106042211!GO:0006268;DNA unwinding during replication;0.0165430134708661!GO:0030036;actin cytoskeleton organization and biogenesis;0.0169340825744!GO:0015036;disulfide oxidoreductase activity;0.0170463557592046!GO:0005669;transcription factor TFIID complex;0.0171184723889557!GO:0042158;lipoprotein biosynthetic process;0.0177515137357746!GO:0008637;apoptotic mitochondrial changes;0.0182313593274577!GO:0003725;double-stranded RNA binding;0.0184542666811562!GO:0043549;regulation of kinase activity;0.0184642292452038!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0186342128385356!GO:0006984;ER-nuclear signaling pathway;0.0190229823301781!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0190408956980396!GO:0005905;coated pit;0.0191308055117826!GO:0050681;androgen receptor binding;0.019601803276788!GO:0006650;glycerophospholipid metabolic process;0.0200053572345936!GO:0030833;regulation of actin filament polymerization;0.0200984338201651!GO:0000123;histone acetyltransferase complex;0.0200984338201651!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0201633199119373!GO:0004680;casein kinase activity;0.0204278536618421!GO:0051539;4 iron, 4 sulfur cluster binding;0.0205992037896564!GO:0007052;mitotic spindle organization and biogenesis;0.0207020900430623!GO:0045892;negative regulation of transcription, DNA-dependent;0.0208107364300276!GO:0043241;protein complex disassembly;0.0208604186208528!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0212199474938731!GO:0030503;regulation of cell redox homeostasis;0.0212442878097394!GO:0005773;vacuole;0.0213678231089279!GO:0031124;mRNA 3'-end processing;0.0216074793370619!GO:0008652;amino acid biosynthetic process;0.0218076485741391!GO:0009303;rRNA transcription;0.021910219607623!GO:0004674;protein serine/threonine kinase activity;0.0219753234722695!GO:0006733;oxidoreduction coenzyme metabolic process;0.0220445866127901!GO:0001889;liver development;0.0231619408399813!GO:0000775;chromosome, pericentric region;0.0232450122509309!GO:0006767;water-soluble vitamin metabolic process;0.0234390161358174!GO:0030137;COPI-coated vesicle;0.0235432269616607!GO:0001726;ruffle;0.0237024886903607!GO:0030968;unfolded protein response;0.023827587956188!GO:0005637;nuclear inner membrane;0.0239745060650704!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0241811693778336!GO:0008538;proteasome activator activity;0.0242008971046688!GO:0006807;nitrogen compound metabolic process;0.0243734508846408!GO:0015631;tubulin binding;0.0250335738097806!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0256129753959352!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0257625983378717!GO:0007004;telomere maintenance via telomerase;0.0257947627137604!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.025855256262294!GO:0030131;clathrin adaptor complex;0.0265915735246238!GO:0006979;response to oxidative stress;0.0266247405541914!GO:0006310;DNA recombination;0.0266872210118469!GO:0009119;ribonucleoside metabolic process;0.0266872210118469!GO:0000097;sulfur amino acid biosynthetic process;0.0270750160523053!GO:0008180;signalosome;0.0276010658401241!GO:0008632;apoptotic program;0.0277808621313395!GO:0031625;ubiquitin protein ligase binding;0.0282858040348007!GO:0030132;clathrin coat of coated pit;0.0284193254087958!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0284708316993696!GO:0030133;transport vesicle;0.0287314802100063!GO:0031970;organelle envelope lumen;0.0288759525673623!GO:0030119;AP-type membrane coat adaptor complex;0.0295074235754286!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0295074235754286!GO:0008629;induction of apoptosis by intracellular signals;0.0296852389019257!GO:0050790;regulation of catalytic activity;0.0298128219309129!GO:0030433;ER-associated protein catabolic process;0.0299708973219032!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0299708973219032!GO:0043433;negative regulation of transcription factor activity;0.0304515040173015!GO:0044262;cellular carbohydrate metabolic process;0.0305942708900591!GO:0000786;nucleosome;0.0307900704434101!GO:0016126;sterol biosynthetic process;0.0308746050257045!GO:0006376;mRNA splice site selection;0.0313828476398651!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0313828476398651!GO:0032200;telomere organization and biogenesis;0.0319248153134772!GO:0000723;telomere maintenance;0.0319248153134772!GO:0030508;thiol-disulfide exchange intermediate activity;0.0321747516605055!GO:0042393;histone binding;0.0321883655068201!GO:0009070;serine family amino acid biosynthetic process;0.0323695527797883!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0324005211628396!GO:0030659;cytoplasmic vesicle membrane;0.0324073931483839!GO:0008320;protein transmembrane transporter activity;0.0333542889528193!GO:0006458;'de novo' protein folding;0.0346560421862496!GO:0051084;'de novo' posttranslational protein folding;0.0346560421862496!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0350982443243241!GO:0006516;glycoprotein catabolic process;0.0365744553211229!GO:0045859;regulation of protein kinase activity;0.0369501854511681!GO:0008426;protein kinase C inhibitor activity;0.0370107391894513!GO:0030518;steroid hormone receptor signaling pathway;0.037645463371283!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0380723666885442!GO:0006378;mRNA polyadenylation;0.0380723666885442!GO:0043065;positive regulation of apoptosis;0.0381265412440237!GO:0005996;monosaccharide metabolic process;0.0381442807243376!GO:0009893;positive regulation of metabolic process;0.0381623389089023!GO:0051053;negative regulation of DNA metabolic process;0.0383795855202011!GO:0008097;5S rRNA binding;0.0389207243136866!GO:0031123;RNA 3'-end processing;0.0389465910937961!GO:0000075;cell cycle checkpoint;0.0391954007474392!GO:0016791;phosphoric monoester hydrolase activity;0.0393050620968827!GO:0043189;H4/H2A histone acetyltransferase complex;0.0393799053923452!GO:0043154;negative regulation of caspase activity;0.0393799053923452!GO:0051716;cellular response to stimulus;0.0394587913539989!GO:0005784;translocon complex;0.0397314511118367!GO:0042770;DNA damage response, signal transduction;0.040080997862287!GO:0044255;cellular lipid metabolic process;0.040080997862287!GO:0006007;glucose catabolic process;0.040080997862287!GO:0006695;cholesterol biosynthetic process;0.040080997862287!GO:0006740;NADPH regeneration;0.0407440807445137!GO:0006098;pentose-phosphate shunt;0.0407440807445137!GO:0031901;early endosome membrane;0.0412903005138831!GO:0006354;RNA elongation;0.041636898020286!GO:0006144;purine base metabolic process;0.0417243930379473!GO:0000178;exosome (RNase complex);0.0417243930379473!GO:0001666;response to hypoxia;0.0418001055040929!GO:0022884;macromolecule transmembrane transporter activity;0.042157022373121!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.042157022373121!GO:0009308;amine metabolic process;0.0427997892464664!GO:0016044;membrane organization and biogenesis;0.0430956605700908!GO:0000323;lytic vacuole;0.0432141147695451!GO:0005764;lysosome;0.0432141147695451!GO:0000159;protein phosphatase type 2A complex;0.0435819445692389!GO:0019318;hexose metabolic process;0.043741007895294!GO:0022406;membrane docking;0.0441476144399763!GO:0048278;vesicle docking;0.0441476144399763!GO:0006284;base-excision repair;0.0445762389521619!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0445762389521619!GO:0032507;maintenance of cellular protein localization;0.0450966904508269!GO:0016584;nucleosome positioning;0.0451110495640206!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0451897349353825!GO:0033673;negative regulation of kinase activity;0.0451897349353825!GO:0006469;negative regulation of protein kinase activity;0.0451897349353825!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0457053711829594!GO:0046128;purine ribonucleoside metabolic process;0.0458927196342152!GO:0042278;purine nucleoside metabolic process;0.0458927196342152!GO:0051348;negative regulation of transferase activity;0.0460051832164089!GO:0006518;peptide metabolic process;0.0460051832164089!GO:0032774;RNA biosynthetic process;0.0460051832164089!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0460837454757446!GO:0006360;transcription from RNA polymerase I promoter;0.0473041086343903!GO:0000175;3'-5'-exoribonuclease activity;0.0475421989445694!GO:0006275;regulation of DNA replication;0.0480561929704165!GO:0047017;prostaglandin-F synthase activity;0.0480561929704165!GO:0051920;peroxiredoxin activity;0.0484960486430162!GO:0007265;Ras protein signal transduction;0.0486513068004697!GO:0035035;histone acetyltransferase binding;0.0489307492161712!GO:0043068;positive regulation of programmed cell death;0.049381389664224!GO:0051881;regulation of mitochondrial membrane potential;0.0495504528698368!GO:0006643;membrane lipid metabolic process;0.0498436703557107
 |sample_id=10496
 |sample_note=
@@ Line 76: / Line 99: @@
 |sample_tissue=bile duct
 |top_motifs=SNAI1..3:2.29317703424;ZEB1:2.18394540214;ELK1,4_GABP{A,B1}:1.83402341227;PITX1..3:1.77600031893;VSX1,2:1.70590496559;NR6A1:1.63658508663;MYOD1:1.56731643121;NFE2L2:1.42365070059;NKX6-1,2:1.40551915048;HNF1A:1.40339137088;FOXP1:1.35077099019;ADNP_IRX_SIX_ZHX:1.32521292082;LMO2:1.28615482236;FOXD3:1.28449804244;FOXQ1:1.23519043593;bHLH_family:1.22386139207;TOPORS:1.16150417834;NKX2-3_NKX2-5:1.086276858;DBP:1.077620865;FOX{I1,J2}:1.05660862875;RORA:1.04326512439;ESRRA:1.02243901516;HNF4A_NR2F1,2:0.992426401185;TBX4,5:0.939549836906;AIRE:0.937000454679;ONECUT1,2:0.907256317365;CEBPA,B_DDIT3:0.797155865938;STAT2,4,6:0.793359054394;NR1H4:0.785564711325;YY1:0.758154530866;FOXL1:0.757994234242;NKX3-2:0.729827847848;IRF7:0.717048400212;ZBTB16:0.700679341384;HOX{A6,A7,B6,B7}:0.698466919506;CDC5L:0.688178142792;ATF4:0.685406465561;PDX1:0.678105942803;NKX2-1,4:0.661879707602;ATF5_CREB3:0.657296742356;IKZF1:0.653300183755;TEAD1:0.643510964458;NFE2:0.600367262712;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.597088622332;NKX3-1:0.579560251113;CRX:0.569736689415;PAX4:0.550329469876;FOXA2:0.54538033544;TLX1..3_NFIC{dimer}:0.539557506702;HMGA1,2:0.525871800782;NR5A1,2:0.525162581545;ATF6:0.517953172859;NFIL3:0.466477428082;FOX{F1,F2,J1}:0.449101392069;FOXN1:0.445144390247;E2F1..5:0.444545970457;POU5F1:0.440177950662;HIF1A:0.400491633595;FOXP3:0.352302546848;CREB1:0.341725541629;CUX2:0.334399944453;PRRX1,2:0.298832204255;NKX2-2,8:0.29522774658;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.288292832808;HAND1,2:0.280730459894;SOX2:0.263527294682;HOX{A5,B5}:0.251779433565;BACH2:0.250327659037;HLF:0.246363574725;FOS_FOS{B,L1}_JUN{B,D}:0.240636349928;CDX1,2,4:0.233814586261;OCT4_SOX2{dimer}:0.233166693886;RBPJ:0.230781917007;T:0.230521244759;BREu{core}:0.228118611059;ESR1:0.2132546734;STAT5{A,B}:0.206580669738;ZNF384:0.189661636696;ELF1,2,4:0.154340131537;JUN:0.138037437127;POU2F1..3:0.103010929608;LEF1_TCF7_TCF7L1,2:0.0919751284217;PAX2:0.0890217325854;SOX5:0.0884490131732;EVI1:0.0601816284198;TFAP2{A,C}:0.054875704414;POU1F1:0.0531654290796;EBF1:0.052339221548;IRF1,2:0.0135326206836;FOSL2:-0.00966849738292;PBX1:-0.029706447419;TP53:-0.0363723897668;TEF:-0.044732037606;ATF2:-0.0462185036019;MYB:-0.0506445085734;EP300:-0.0584361916318;TFDP1:-0.0769340969864;MED-1{core}:-0.0879985065114;ZNF143:-0.126602577106;ARID5B:-0.151892759655;PAX8:-0.153486474173;LHX3,4:-0.165478241755;ALX1:-0.165894918951;GFI1B:-0.19534873612;IKZF2:-0.209243584696;NFY{A,B,C}:-0.218850503925;NFKB1_REL_RELA:-0.220038751678;AHR_ARNT_ARNT2:-0.229155224106;FOXO1,3,4:-0.230504276722;ZFP161:-0.230662169973;FOX{D1,D2}:-0.232817721831;RXRA_VDR{dimer}:-0.242272136303;TAL1_TCF{3,4,12}:-0.245568817415;MEF2{A,B,C,D}:-0.248544980689;HOXA9_MEIS1:-0.26688541974;RFX2..5_RFXANK_RFXAP:-0.280594962855;ALX4:-0.306872992498;MYBL2:-0.324707836348;DMAP1_NCOR{1,2}_SMARC:-0.332311712463;TFAP2B:-0.333414875306;BPTF:-0.339181928281;MTE{core}:-0.341402036941;UFEwm:-0.343477718263;PAX1,9:-0.344899089708;MAFB:-0.360421172229;NRF1:-0.375791798538;POU6F1:-0.414322147784;SOX{8,9,10}:-0.431243783894;ZIC1..3:-0.433922585509;TBP:-0.444152666349;PPARG:-0.458286401836;SPI1:-0.476662048458;HIC1:-0.491921193162;ETS1,2:-0.498832067373;KLF4:-0.500736085038;ZBTB6:-0.518383903048;SPIB:-0.533018556533;HOX{A4,D4}:-0.546004948351;GATA6:-0.560341037103;HSF1,2:-0.569142071581;GFI1:-0.579879661737;FOXM1:-0.581552136413;MZF1:-0.586032485665;MTF1:-0.614888814814;RREB1:-0.636530466055;REST:-0.636860275761;PRDM1:-0.671587616343;TFCP2:-0.691831970329;AR:-0.693785649115;GTF2I:-0.713495403371;NANOG:-0.718650781328;PAX3,7:-0.723017091361;PAX5:-0.738683976096;NR3C1:-0.753958843546;SREBF1,2:-0.773291932965;ZNF423:-0.79170724279;PATZ1:-0.81866235261;MAZ:-0.843364516731;GZF1:-0.862730882049;GLI1..3:-0.863197488852;GTF2A1,2:-0.886313643298;GATA4:-0.890523516164;RUNX1..3:-0.927458262231;SPZ1:-0.931127916248;ZNF148:-0.947849418047;NFATC1..3:-0.950036570261;NHLH1,2:-0.960488861078;EN1,2:-0.967378423821;TFAP4:-0.976405851936;TLX2:-0.977237166537;POU3F1..4:-1.01745441366;XBP1:-1.03023618857;NFE2L1:-1.03789982769;RFX1:-1.03957702299;MYFfamily:-1.04576889074;TGIF1:-1.05086926451;SOX17:-1.07856093184;HMX1:-1.10655053092;SRF:-1.13354712882;HBP1_HMGB_SSRP1_UBTF:-1.1348823708;NFIX:-1.16280645327;GCM1,2:-1.20219810409;ZNF238:-1.24714759602;SP1:-1.26984614729;STAT1,3:-1.27579180494;EGR1..3:-1.27763627983;XCPE1{core}:-1.33783272485;NANOG{mouse}:-1.4316040034;RXR{A,B,G}:-1.51211948214;HES1:-1.52760506476;PAX6:-1.64974383921;SMAD1..7,9:-2.37732127928
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10496-107C1;search_select_hide=table117:FF:10496-107C1
 }}

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FF:10496-107C1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:27, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0